BAC Information

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BAC

Clone NameB6Ng01-033D13
Chromosome14 (Build37)9 (Build37)
Map Location 44,332,967 - 44,333,13988,345,326 - 88,346,092
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717
Downstream geneLOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033D13.bB6Ng01-033D13.g
ACCDH862336DH862337
length918767
definitionDH862336|Mus musculus domesticus DNA, BAC clone: B6Ng01-033D13, 5' end.DH862337|Mus musculus domesticus DNA, BAC clone: B6Ng01-033D13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,332,967 - 44,333,139)(88,345,326 - 88,346,092)
sequence
gaattcattttgcaatgaagttcttaggcaattgggtggaactagaaaat
attatcctgagtaaggtaacccgttcacaaaagaacacacatggtataca
ctcactgataagtgggtattagcccagaaccttggaatacccaagatact
attcacagagcacatgaaggtcaagaagaaggaagaccaaagtgtggatg
cttcagtccttcttagaaggggggacaaaatacccacaggaggagatacg
gaaacaaaatgtgaatcaaaaactgaaggaaaggccatccagagtctgcc
ccacctggggatccaccctatatacagtcaccaaacccagatattattgt
ggatgccatccattgcttgctgacaggagcctaataaaactgtatactga
gaatctctgccagagcctgacaaatacagaggtggatactctcatccaac
cattggattgagaacagggtccccaatggaggaggtagagaaaggaccaa
aggacctgaaggggtttgcagccccaccggaagaacaacaatatgaacca
accagtaccccccccccgagctcccagggactaaaccaacaaccaaagag
tacacatggaggaacccatggctccagctgcatatgcagcatataatgga
cttggcggacatcaattggagaaaaggcccttggtcctcttaaggctcaa
tgccccactgtagaggaatgccacagcaggaaatacagttgggtgggtgg
gaccagaagtacttattttctactgtgttgccaaggacagtcattggctg
taagattttgctataaaataacagcaaagagggctgttatcacaattctt
gtttttggattttggtttgagcttgattacttttgttcttggtttctttt
gtttcataataagttttt
gaattcctgtttattgtatttatatgtggggagaaaacagctcacggagg
gtattattggaagttttaggaacctgagcagccatttactctaggactac
cttttgctggtgcatgaagcccttctatattttaatttctccccctcaaa
taatgacatcaaaacagtctgtttttggtgtttctgaccaaaaatttcta
aaaagtgtactaaaaataattttcccatgtagtttgttgttcattctaat
actaaatacaacttttcaaaaatcttatagactattatatagaacaggtg
gccccgtcaagccatttgtggtattcctaatctatcatgagaaaatgtat
atactttgtcagatatgcatcaatcagtaaaagtttaacaaaaggtgggt
aaaaagtttctcatggtgttaaatgccgttgtgaggatgtgattcctctt
gtgcccttcatttctccatttttgacatgtgattcaatttcaatgactac
ctatttttcgggaaaaaccctgctgaacaagaatatcattaacacaattt
tctcaaagaattttcctgagaactgataaactaaatttatgaacactttt
gattgccaagtagtctgcttaaacaaaaccttgcgtcagttttggctaag
tcacttttttagtgtcaaattcatttgatattttgtaaccacaaggaagg
gacttgactattaaaaatccttcccttgacaatatatacagaatttaact
tctcagctgtgcattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44332967_44333139
seq2: B6Ng01-033D13.b_791_957

seq1  ACCAGAAGTAACTTATTTTCTACTGTGTTGCCAAGGACAGTCATTGGCTG  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGT-ACTTATTTTCTACTGTGTTGCCAAGGACAGTCATTGGCTG  49

seq1  TAAGATTTTGCTATAAAATAACAGCAAAAGAAGGCTGTTTATCACAATTC  100
      ||||||||||||||||||||||||| ||||| ||||| ||||||||||||
seq2  TAAGATTTTGCTATAAAATAACAGC-AAAGAGGGCTG-TTATCACAATTC  97

seq1  TTGTTTTTGGATTTTGGTTTGAGCTTTGATTACTTTTGTTCTTTGGTTTT  150
      |||||||||||||||||||||||| ||||||||||||||||||  | |||
seq2  TTGTTTTTGGATTTTGGTTTGAGC-TTGATTACTTTTGTTCTT--GGTTT  144

seq1  CTTTTGTTTCATTAGAAGTTTTT  173
      |||||||||||| | ||||||||
seq2  CTTTTGTTTCATAATAAGTTTTT  167

seq1: chr9_88345326_88346092
seq2: B6Ng01-033D13.g_69_835

seq1  GAATTCCTGTTTATTGTATTTATATGTGGGGAGAAAACAG-TCACGGAGG  49
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAATTCCTGTTTATTGTATTTATATGTGGGGAGAAAACAGCTCACGGAGG  50

seq1  GTATTATTGGAATTTTTAGGAACCTGAGCAACCATTTACTCTAGGACTAC  99
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  GTATTATTGGAAGTTTTAGGAACCTGAGCAGCCATTTACTCTAGGACTAC  100

seq1  CTTTTCCTAATGCATGAAGCCCTTCTATATTTTAATTTCTCCCCATCAAA  149
      ||||| ||  |||||||||||||||||||||||||||||||||| |||||
seq2  CTTTTGCTGGTGCATGAAGCCCTTCTATATTTTAATTTCTCCCCCTCAAA  150

seq1  TAATGACATCAAAACAGTATGTTTTTGGTGTTTCTGACCAAAAATTTCAA  199
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  TAATGACATCAAAACAGTCTGTTTTTGGTGTTTCTGACCAAAAATTTCTA  200

seq1  AAAAGTGTACTAAAGATAATTTTCCCATGTAGTTTGTTGTTCATTCTAAT  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTACTAAAAATAATTTTCCCATGTAGTTTGTTGTTCATTCTAAT  250

seq1  ACTAAATACATCTTTTCAAATATCTTATATACAATTATATAGCACATATC  299
      |||||||||| ||||||||| |||||||| || ||||||||| |||  | 
seq2  ACTAAATACAACTTTTCAAAAATCTTATAGACTATTATATAGAACAGGTG  300

seq1  GCCCCATCAATCCATTTGTGGTATTCCTAATCTATCATGAGAAAATGTAT  349
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGTCAAGCCATTTGTGGTATTCCTAATCTATCATGAGAAAATGTAT  350

seq1  ATACTTTGTCAGATATGCATCAATCAGTAAAAGTTTAACAATA-ATCAGT  398
      ||||||||||||||||||||||||||||||||||||||||| |  |  ||
seq2  ATACTTTGTCAGATATGCATCAATCAGTAAAAGTTTAACAAAAGGTGGGT  400

seq1  AAAAAGTTTCTCATGGTGTTAAATGCCATTGTGAGTATGTGATTCCTTTT  448
      ||||||||||||||||||||||||||| ||||||| ||||||||||| ||
seq2  AAAAAGTTTCTCATGGTGTTAAATGCCGTTGTGAGGATGTGATTCCTCTT  450

seq1  GTGCAATTCAGTTCTCCATTTTTAACATGTGATTCAATTTCAGTGACTAA  498
      ||||  |||| |||||||||||| |||||||||||||||||| |||||| 
seq2  GTGCCCTTCATTTCTCCATTTTTGACATGTGATTCAATTTCAATGACTAC  500

seq1  GTATCTTTCAAAAATAAACATGCTGAGCAAGAATATAATTAACACAATTT  548
       ||| ||||   || || | |||||| ||||||||| |||||||||||||
seq2  CTATTTTTCGGGAAAAACCCTGCTGAACAAGAATATCATTAACACAATTT  550

seq1  TCTCATAATAATTTTCCTGAGAACTGATAAACTAAATTTATGAACACTTT  598
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  TCTCA-AAGAATTTTCCTGAGAACTGATAAACTAAATTTATGAACACTTT  599

seq1  TGATTGCCAAGTAGTCTGCAGAAACAAAACCTTGCGTCTGTTTTGGTTAG  648
      |||||||||||||||||||  ||||||||||||||||| ||||||| || 
seq2  TGATTGCCAAGTAGTCTGCTTAAACAAAACCTTGCGTCAGTTTTGGCTAA  649

seq1  GTAACTTTTTTAACAATCAGAATTCA-TTAATATTTTTTAACCACAAGGA  697
      || |||||||| |   ||| |||||| || ||||||| ||||||||||||
seq2  GTCACTTTTTT-AGTGTCA-AATTCATTTGATATTTTGTAACCACAAGGA  697

seq1  AGGGACTTGACTATTAAAGATCCTTTCCTTGACAATATATACAAAATTTA  747
      |||||||||||||||||| |||||| ||||||||||||||||| ||||||
seq2  AGGGACTTGACTATTAAAAATCCTTCCCTTGACAATATATACAGAATTTA  747

seq1  ACTTCTCATCTGTCCATTAT  767
      |||||||| |||| ||||||
seq2  ACTTCTCAGCTGTGCATTAT  767