BAC Information

Click to search

BAC

Clone NameB6Ng01-033G14
Chromosome9 (Build37)
Map Location 32,145,629 - 32,333,562
singlet/doubletdoublet
Overlap geneKcnj5, Kcnj1, Fli1
Upstream genePrdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit
Downstream geneLOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033G14.bB6Ng01-033G14.g
ACCDH862466DH862467
length467617
definitionDH862466|Mus musculus domesticus DNA, BAC clone: B6Ng01-033G14, 5' end.DH862467|Mus musculus domesticus DNA, BAC clone: B6Ng01-033G14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,145,629 - 32,146,095)(32,332,946 - 32,333,562)
sequence
gaattctgcattaaataataaagaggactaataattaagtcaaagtgaaa
aaccccttatttcctttctaaggcctggggggacagatttccttgtctgg
tgccaattcgtgaagtatgactagacaggatcacacagactgcaaagagg
aaacagcaagaaagcagaagaggagaatatacacatgtttatgtaaaggt
ggaaagcttgggtgtgagagggcaaaaactgggccaggcacgtggaagaa
ccagggagccagagtacagtaggtatggcccccagaatcacagctgaaac
ctaccggatgcaggtgagttctgtacactaattattagcgtttcttctag
actccaccccacagttaccgggcaacagccaggtatgtctgacttactat
aaaaggggctgcttaccccctcctcactttcttctcttgttctcttactc
tcttgccttcttccccc
gaattccaggcttgtgctgttgataaagagattcatgtcaaacaaacaag
agtaaagaccatcagagaaatattccgtccaacctgcaccacttagaccc
attgtgttcaggtttatgtcgcctttataaagtgtatccttgctataaaa
cccatgacctttccacagcattcccgtgtgaatagctttgaaattcccgt
gtgtctggccagatactttctaggtgccttatctcattcaccaggggcat
ctcttcggctgtttcttcagagtctccacaaccctaattccttttggtct
tttatcatgtcttaggcaagatgttggccaattcacagggaacctaacat
gacggcccatctgctccgggctttacctttctttctcttctggagagatg
agtgtctgcagcagagttgattctcttgttcccatgcaaggttgtcattg
tctgtcttcaactctggttctatcactaagcacagagaatgaaggaagta
cctatcgagcagaaggagcagtctgccttgaagatgggtgttggggatgg
ttaatgtcagaaaaacggtggccctcacctaatgagcccagggagagctt
tttttactctcactgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_32145629_32146095
seq2: B6Ng01-033G14.b_44_510

seq1  GAATTCTGCATTAAATAATAAAGAGGATTAATAATTAAGTCAAAGTGAAA  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCTGCATTAAATAATAAAGAGGACTAATAATTAAGTCAAAGTGAAA  50

seq1  AACCCCTTATTTCCTTTCTAAGGCCTGGGGGGACAGATTTCCTTGTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTTATTTCCTTTCTAAGGCCTGGGGGGACAGATTTCCTTGTCTGG  100

seq1  TGCCAATTCGTGAAGTATGACTAGACAGGATCACACAGACTGCAAAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATTCGTGAAGTATGACTAGACAGGATCACACAGACTGCAAAGAGG  150

seq1  AAACAGCAAGAAAGCAGAAGAGGAGAATATACACATGTTTATGTAAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAAGAAAGCAGAAGAGGAGAATATACACATGTTTATGTAAAGGT  200

seq1  GGAAAGCTTGGGTGTGAGAGGGCAAAAACTGGGCCAGGCACGTGGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCTTGGGTGTGAGAGGGCAAAAACTGGGCCAGGCACGTGGAAGAA  250

seq1  CCAGGGAGCCAGAGTACAGTAGGTATGGCCCCCAGAATCACAGCTGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGCCAGAGTACAGTAGGTATGGCCCCCAGAATCACAGCTGAAAC  300

seq1  CTACCGGATGCAGGTGAGTTCTGTACACTAATTATTAGCGTTTCTTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCGGATGCAGGTGAGTTCTGTACACTAATTATTAGCGTTTCTTCTAG  350

seq1  ACTCCACCCCACAGTTACCGGGCAACAGCCAGGTATGTCTGACTTACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACCCCACAGTTACCGGGCAACAGCCAGGTATGTCTGACTTACTAT  400

seq1  AAAAGGGGCTGCTTACCCCCTCCTCACTTTCTTCTCTTGTTCTCTTACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGGCTGCTTACCCCCTCCTCACTTTCTTCTCTTGTTCTCTTACTC  450

seq1  TCTTGCCTTCTTCCCCC  467
      |||||||||||||||||
seq2  TCTTGCCTTCTTCCCCC  467

seq1: chr9_32332946_32333562
seq2: B6Ng01-033G14.g_71_687 (reverse)

seq1  GGCAGTGAGAGTAAAAAAAGCTCTCCCTGGGCTCATTAGGTGAGGGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGAGAGTAAAAAAAGCTCTCCCTGGGCTCATTAGGTGAGGGCCAC  50

seq1  CGTTTTTCTGACATTAACCATCCCCAACACCCATCTTCAAGGCAGACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTTCTGACATTAACCATCCCCAACACCCATCTTCAAGGCAGACTGC  100

seq1  TCCTTCTGCTCGATAGGTACTTCCTTCATTCTCTGTGCTTAGTGATAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGCTCGATAGGTACTTCCTTCATTCTCTGTGCTTAGTGATAGAA  150

seq1  CCAGAGTTGAAGACAGACAATGACAACCTTGCATGGGAACAAGAGAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTTGAAGACAGACAATGACAACCTTGCATGGGAACAAGAGAATCA  200

seq1  ACTCTGCTGCAGACACTCATCTCTCCAGAAGAGAAAGAAAGGTAAAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCTGCAGACACTCATCTCTCCAGAAGAGAAAGAAAGGTAAAGCCC  250

seq1  GGAGCAGATGGGCCGTCATGTTAGGTTCCCTGTGAATTGGCCAACATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGATGGGCCGTCATGTTAGGTTCCCTGTGAATTGGCCAACATCTT  300

seq1  GCCTAAGACATGATAAAAGACCAAAAGGAATTAGGGTTGTGGAGACTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAGACATGATAAAAGACCAAAAGGAATTAGGGTTGTGGAGACTCTG  350

seq1  AAGAAACAGCCGAAGAGATGCCCCTGGTGAATGAGATAAGGCACCTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAGCCGAAGAGATGCCCCTGGTGAATGAGATAAGGCACCTAGAA  400

seq1  AGTATCTGGCCAGACACACGGGAATTTCAAAGCTATTCACACGGGAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTGGCCAGACACACGGGAATTTCAAAGCTATTCACACGGGAATGC  450

seq1  TGTGGAAAGGTCATGGGTTTTATAGCAAGGATACACTTTATAAAGGCGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAGGTCATGGGTTTTATAGCAAGGATACACTTTATAAAGGCGAC  500

seq1  ATAAACCTGAACACAATGGGTCTAAGTGGTGCAGGTTGGACGGAATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCTGAACACAATGGGTCTAAGTGGTGCAGGTTGGACGGAATATTT  550

seq1  CTCTGATGGTCTTTACTCTTGTTTGTTTGACATGAATCTCTTTATCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGGTCTTTACTCTTGTTTGTTTGACATGAATCTCTTTATCAACA  600

seq1  GCACAAGCCTGGAATTC  617
      |||||||||||||||||
seq2  GCACAAGCCTGGAATTC  617