BAC Information

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BAC

Clone NameB6Ng01-033M05
Chromosome9 (Build37)
Map Location 66,537,798 - 66,713,253
singlet/doubletdoublet
Overlap geneCar12, Aph1b, LOC623488, Aph1c, Rab8b
Upstream geneOaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3
Downstream geneRps27l, Lactb, Tpm1, Tln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033M05.bB6Ng01-033M05.g
ACCDH862723DH862724
length970866
definitionDH862723|Mus musculus domesticus DNA, BAC clone: B6Ng01-033M05, 5' end.DH862724|Mus musculus domesticus DNA, BAC clone: B6Ng01-033M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,537,798 - 66,538,770)(66,712,386 - 66,713,253)
sequence
gaattccaagaagttttttctttatcagatgcagggatgggcaaggaatg
gctgttgaggggttcaagccaggctgagataagtaactagcttctggacc
tacaatgttccaccctcctcaaccactgcagttctagtcagccaggtggc
ctgtgaagacgcagctccctgcttactgacactgtgtgaaagcacctgac
ccagggttccctttgtgtattttctactgcaggaggctctgctttcttcc
cccttggtggatggactagtaagtcacctgtcttagtcagggtttctatt
cctgcacaaacatcatgaccaagaagcaagttggggaggaaagggtttat
tcagcttacattttccacattgttgttcatcaccaaaggatgtcaggact
ggaactcaagcaggtcagaaagcaggagctgaagcagaagccatggaggg
atgttctttactggcttgcttcccctggcttgctcagcctgctctcttat
agaatccaagactcccagcccagagatggtcccacccacaagggtccttt
accccttgatcactaattgaaaaaatgccttacagttggatctcatagag
gcatttccccaactgaagctcctttctctgtgataactccagctgtgtca
agttgacacaaaactagccagtacatcaccatcttggaatcacaccgctt
ggacttgtagactcaggaactgtaagaaaacaaatttttattcttttaca
gtgccctgggtgtggcgttctctcagtcacagtaccataaatggccatga
tggggactaaaagagacatttcttctaaaagtatgctttatttttcctta
gaggtgaagcttttctgcagactactttttctgtctgactttttattgat
ttttttgtgagctgcacatcatgctccccagtccactcatctccccgtcc
ctcctatctgctcttaactc
gaattctctcttccactgtgggatcccggattgaactcaggctgccaagt
actttttttttttttaaccaatttgagtcacattgcctggcaaaagagga
tctctatgggtcattgttatactggatttgggggtattttaaaaagtcaa
atgacaataaagactggtgtctacacctgaaacaagtgagggcagacaca
ggtgctatgggatgcttgcagcactagtcacactactaagttttgcttac
agttccaactgctcctgcaaagccaactaccagagaggaggaaacaggag
gcgtgtaacctgggaacactggtatcagattgtattgctcacagtccagg
gccattagtgagagaggagaatgattaagaggctagtttgttagatcggc
ttgggtgggatttttgtgtgtttccaaatgcagaaagctaagaaggctcc
cgcatggaaaagtaccacagagggaagagggtgaaatccagttggtttat
gcatatgcattactgaaagcaggagctgggaaacggtccttttgggtgct
ttccacctccctgtgaagaaatattatacatggctgcatgatacccctcc
acactccaaatgctgcagttactgttcaagaccatttataggacacagtt
tataaatgttcttgaaaagtattggaaactgagtttagtgtaaaagtaaa
agagtgggaaaaaaaactaaatacagctgagtggccagaggagggcgatt
tagtgcattgctgcccagtgtatttatctctgatccctacagaagcccta
ctcgtttctggggctggggctatagctcagttggtagagtgcctgcctgt
agaagtcctttgcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_66537798_66538770
seq2: B6Ng01-033M05.b_47_1016

seq1  GAATTCCAAGAAGTTTTTTCTTTATCAGATGCAGGGATGGGCAAGGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAAGTTTTTTCTTTATCAGATGCAGGGATGGGCAAGGAATG  50

seq1  GCTGTTGAGGGGTTCAAGCCAGGCTGAGATAAGTAACTAGCTTCTGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGAGGGGTTCAAGCCAGGCTGAGATAAGTAACTAGCTTCTGGACC  100

seq1  TACAATGTTCCACCCTCCTCAACCACTGCAGTTCTAGTCAGCCAGGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGTTCCACCCTCCTCAACCACTGCAGTTCTAGTCAGCCAGGTGGC  150

seq1  CTGTGAAGACGCAGCTCCCTGCTTACTGACACTGTGTGAAAGCACCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGACGCAGCTCCCTGCTTACTGACACTGTGTGAAAGCACCTGAC  200

seq1  CCAGGGTTCCCTTTGTGTATTTTCTACTGCAGGAGGCTCTGCTTTCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTTCCCTTTGTGTATTTTCTACTGCAGGAGGCTCTGCTTTCTTCC  250

seq1  CCCTTGGTGGATGGACTAGTAAGTCACCTGTCTTAGTCAGGGTTTCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGTGGATGGACTAGTAAGTCACCTGTCTTAGTCAGGGTTTCTATT  300

seq1  CCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTAT  350

seq1  TCAGCTTACATTTTCCACATTGTTGTTCATCACCAAAGGATGTCAGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTACATTTTCCACATTGTTGTTCATCACCAAAGGATGTCAGGACT  400

seq1  GGAACTCAAGCAGGTCAGAAAGCAGGAGCTGAAGCAGAAGCCATGGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCAAGCAGGTCAGAAAGCAGGAGCTGAAGCAGAAGCCATGGAGGG  450

seq1  ATGTTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTAT  500

seq1  AGAATCCAAGACTCCCAGCCCAGAGATGGTCCCACCCACAAGGGTCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCAAGACTCCCAGCCCAGAGATGGTCCCACCCACAAGGGTCCTTT  550

seq1  ACCCCTTGATCACTAATTGAAAAAATGCCTTACAGTTGGATCTCATAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTGATCACTAATTGAAAAAATGCCTTACAGTTGGATCTCATAGAG  600

seq1  GCATTTCCCCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCCCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCA  650

seq1  AGTTGACACAAAACTAGCCAGTACATCACCATCTTGGAATCACACCGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACACAAAACTAGCCAGTACATCACCATCTTGGAATCACACCGCTT  700

seq1  GGACTTGTAGACTCAGGAACTGTAAGAAAACAAATTTTTATTCTTTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGTAGACTCAGGAACTGTAAGAAAACAAATTTTTATTCTTTTACA  750

seq1  GTGCCCTGGGTGTGGCGTTCTCTCAGTCACAGTACCATAAATGGCCATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTGGGTGTGGCGTTCTCTCAGTCACAGTACCATAAATGGCCATGA  800

seq1  TGGGGACTAAAAGAGACATTTCTTCTAAAAGTATGC-TTATTTTTCCTTA  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGGGGACTAAAAGAGACATTTCTTCTAAAAGTATGCTTTATTTTTCCTTA  850

seq1  GAGGTGAAGCTTTTCTGCAGACTACTTTTTCTGTCTTGACTTTTTATTGA  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGGTGAAGCTTTTCTGCAGACTACTTTTTCTGTC-TGACTTTTTATTGA  899

seq1  TTTTTTTTGTGAGCTTCACATCATGCTCCCCAGTCCCACTCATCTCCCCG  949
       |||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  -TTTTTTTGTGAGCTGCACATCATGCTCCCCAGT-CCACTCATCTCCCCG  947

seq1  TCCCTCCTATCTGCTCTTCAACTC  973
      |||||||||||||||||| |||||
seq2  TCCCTCCTATCTGCTCTT-AACTC  970

seq1: chr9_66712386_66713253
seq2: B6Ng01-033M05.g_69_933 (reverse)

seq1  AAGC-AAGGACTTTCTACAGGCAAGCACTCTACCAACTGAGCTATAGCCC  49
      |||| |||||| ||||||||||| ||||||||||||||||||||||||||
seq2  AAGCAAAGGAC-TTCTACAGGCAGGCACTCTACCAACTGAGCTATAGCCC  49

seq1  CAGCCCCAGGAACGAGGAAGGGCTTCTGTAGGGATCAGAGATAAATACAA  99
      ||||||||| ||||| | |||||||||||||||||||||||||||||| |
seq2  CAGCCCCAGAAACGA-GTAGGGCTTCTGTAGGGATCAGAGATAAATAC-A  97

seq1  CTGGGCAGCAATGCACTAAATCGCCCTCCTCTGGCCACTCAGCTGTATTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGCAATGCACTAAATCGCCCTCCTCTGGCCACTCAGCTGTATTT  147

seq1  AGTTTTTTTTCCCACTCTTTTACCTTTTACACTAAACTCAGTTTCCAATA  199
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTTTTTTTTCCCACTCTTTTA-CTTTTACACTAAACTCAGTTTCCAATA  196

seq1  CTTTTCAAGAACATTTATAAACTGTGTCCTATAAATGGTCTTGAACAGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAGAACATTTATAAACTGTGTCCTATAAATGGTCTTGAACAGTA  246

seq1  ACTGCAGCATTTGGAGTGTGGAGGGGTATCATGCAGCCATGTATAATATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGCATTTGGAGTGTGGAGGGGTATCATGCAGCCATGTATAATATT  296

seq1  TCTTCACAGGGAGGTGGAAAGCACCCAAAAGGACCGTTTCCCAGCTCCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAGGGAGGTGGAAAGCACCCAAAAGGACCGTTTCCCAGCTCCTG  346

seq1  CTTTCAGTAATGCATATGCATAAACCAACTGGATTTCACCCTCTTCCCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTAATGCATATGCATAAACCAACTGGATTTCACCCTCTTCCCTC  396

seq1  TGTGGTACTTTTCCATGCGGGAGCCTTCTTAGCTTTCTGCATTTGGAAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTACTTTTCCATGCGGGAGCCTTCTTAGCTTTCTGCATTTGGAAAC  446

seq1  ACACAAAAATCCCACCCAAGCCGATCTAACAAACTAGCCTCTTAATCATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAATCCCACCCAAGCCGATCTAACAAACTAGCCTCTTAATCATT  496

seq1  CTCCTCTCTCACTAATGGCCCTGGACTGTGAGCAATACAATCTGATACCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCTCACTAATGGCCCTGGACTGTGAGCAATACAATCTGATACCA  546

seq1  GTGTTCCCAGGTTACACGCCTCCTGTTTCCTCCTCTCTGGTAGTTGGCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCCAGGTTACACGCCTCCTGTTTCCTCCTCTCTGGTAGTTGGCTT  596

seq1  TGCAGGAGCAGTTGGAACTGTAAGCAAAACTTAGTAGTGTGACTAGTGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAGCAGTTGGAACTGTAAGCAAAACTTAGTAGTGTGACTAGTGCT  646

seq1  GCAAGCATCCCATAGCACCTGTGTCTGCCCTCACTTGTTTCAGGTGTAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATCCCATAGCACCTGTGTCTGCCCTCACTTGTTTCAGGTGTAGA  696

seq1  CACCAGTCTTTATTGTCATTTGACTTTTTAAAATACCCCCAAATCCAGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTCTTTATTGTCATTTGACTTTTTAAAATACCCCCAAATCCAGTA  746

seq1  TAACAATGACCCATAGAGATCCTCTTTTGCCAGGCAATGTGACTCAAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATGACCCATAGAGATCCTCTTTTGCCAGGCAATGTGACTCAAATT  796

seq1  GGTTAAAAAAAAAAAAAGTACTTGGCAGCCTGAGTTCAATCCGGGATCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAAAAAAAAAAAGTACTTGGCAGCCTGAGTTCAATCCGGGATCCC  846

seq1  ACAGTGGAAGAGAGAATTC  868
      |||||||||||||||||||
seq2  ACAGTGGAAGAGAGAATTC  865