BAC Information

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BAC

Clone NameB6Ng01-035D08
Chromosome9 (Build37)
Map Location 119,691,201 - 119,840,486
singlet/doubletdoublet
Overlap geneScn11a, LOC100039837, Wdr48, Gorasp1
Upstream geneItga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a
Downstream geneTtc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035D08.bB6Ng01-035D08.g
ACCDH863741DH863742
length1751,066
definitionDH863741|Mus musculus domesticus DNA, BAC clone: B6Ng01-035D08, 5' end.DH863742|Mus musculus domesticus DNA, BAC clone: B6Ng01-035D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,691,201 - 119,691,375)(119,839,406 - 119,840,486)
sequence
gaattctgtccctgaaaagcccaatgtggaaatatactgggaaaaatact
ggctagaacaggaagaggaatgcattgtcaagttccttaatcgcaacagt
atgattccggtgtaagactcagcctatccaattaactcaaagatgcaagt
gtgtgtgtgtgtgtgtgtgtgtgtg
gaattcagtccccaggaacccacactgtggaaggactgttgtcctctgac
ctccacgtatgccagggcacacgtgcacccacacaagtaagtgtggtggt
gtttgtaaacaaaagcaaagcactaattctgaggtgtggcttgtaaggag
gctgtgtggttctgtagcatgagcttcgagatggcagcatcctgcctgct
acaccatcacaccaagtaaagagaggcaggctcttggaacccacaagagc
atatgacccaaaacaagtagccaccccaagccagaagctggacagccctg
ccacgaccacactgctcttgagggctccggagtcggccttgtcagccctt
tgtgcacgggcacgcctttgcacgcagaccgcaaagattctgcagaggca
gctagaacccaaccagcaagccttcccagcaggggcaccttccctccata
gaacaggagactgaccattgcagggctctggtgtaccaccgatacacaca
gtgtcaggtgggcatatgagtctgagagctaaggctaacatgtggggcag
ctcagccactgagattcattccctgtacccgttatatagcaacaggccag
agaaactactatgccatctttatctatctttggctggaacagcactaaac
actgcagcaggcttctggtggttcatgctggcccacccttcaaataagga
acaaagccacggggctgcacaggcagctcacaaccatctgcaactccagt
cccaggggaccaaagtcctcttgtggtcctccaggagcactgcacacatg
tggtgcacagataaacattgcagataaaaatgcccatatatacaaagtaa
taaaattaaaaagaaactaaggtccaggagttaagattgcccaagagtgc
tgcatctgtcaccaggcagtaacttgggggaggggggaactgggcctggg
gagagtcttctgaggcctgctgggcatagaggcagtgtccctcctaggga
gcttctctcctggcttacggtgaatcttattatcatttctcacttcagga
atgggagcctctttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_119691201_119691375
seq2: B6Ng01-035D08.b_44_218

seq1  GAATTCTGTCCCTGAAAAGCCCAATGTGGAAATATACTGGGAAAAATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCCTGAAAAGCCCAATGTGGAAATATACTGGGAAAAATACT  50

seq1  GGCTAGAACAGGAAGAGGAATGCATTGTCAAGTTCCTTAATCGCAACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAACAGGAAGAGGAATGCATTGTCAAGTTCCTTAATCGCAACAGT  100

seq1  ATGATTCCGGTGTAAGACTCAGCCTATCCAATTAACTCAAAGATGCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCCGGTGTAAGACTCAGCCTATCCAATTAACTCAAAGATGCAAGT  150

seq1  GTGTGTGTGTGTGTGTGTGTGTGTG  175
      |||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTG  175

seq1: chr9_119839406_119840486
seq2: B6Ng01-035D08.g_67_1132 (reverse)

seq1  GTGAAGAGGGCTCCACATCCTGAAGTGAG-AATGATAAACTAAGATTCAA  49
      || |||| ||||||   |||||||||||| ||||||||  ||||||||| 
seq2  GTAAAGA-GGCTCCCATTCCTGAAGTGAGAAATGATAA--TAAGATTCAC  47

seq1  CGCTAAGC--AGAGAGAAGAGGCTTCTCTAGGGAGGGGACACTTGCCCTC  97
      || |||||   ||||||||     || |||||   ||||||||   ||||
seq2  CG-TAAGCCAGGAGAGAAG----CTCCCTAGG--AGGGACACT--GCCTC  88

seq1  TATTGCCCAGCAGGGCCTCAAGAAAGACTTCTCCACAGGGCCCAAGTTTC  147
      || ||||||||| |||||||   ||||| ||||| || ||||||   |||
seq2  TA-TGCCCAGCA-GGCCTCA--GAAGAC-TCTCCCCA-GGCCCA--GTTC  130

seq1  TCCCCTCCCCCAAGTTACTGCCTGGTGAACAGATGGCAGCACTCTTGGGC  197
       |||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  CCCCCTCCCCCAAGTTACTGCCTGGTG-ACAGAT-GCAGCACTCTTGGGC  178

seq1  ATTCTTAACT-CTGGACCTTAGTTTCTTTTAAATTTTATTACTTTGTATA  246
      | |||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  AATCTTAACTCCTGGACCTTAGTTTCTTTTTAATTTTATTACTTTGTATA  228

seq1  TATGGGCA-TTTTATCTGC-ATGTTTATCTGTGCACCACATGTGTGCAGT  294
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  TATGGGCATTTTTATCTGCAATGTTTATCTGTGCACCACATGTGTGCAGT  278

seq1  GCTCCTGGAGG-CCACAAGAGGACCTTGGGTCCCCTGGGACTGGAGTTGC  343
      ||||||||||| ||||||||||| ||| ||||||||||||||||||||||
seq2  GCTCCTGGAGGACCACAAGAGGA-CTTTGGTCCCCTGGGACTGGAGTTGC  327

seq1  AGATGGTTGTGAGCTGCCTGTGCAGCCCCCGTGGCTTTGTTCCTTATTTG  393
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGATGGTTGTGAGCTGCCTGTGCAG-CCCCGTGGCTTTGTTCCTTATTTG  376

seq1  AAGGGTGGGCCAGCATGAACCACCAGAAGCCTGCTGCAGTGTTTAGTGCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGGGCCAGCATGAACCACCAGAAGCCTGCTGCAGTGTTTAGTGCT  426

seq1  GTTCCAGCC-AAGATAGATAAAGATGGCATAGTAGTTTCTCTGGCCTGTT  492
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGCCAAAGATAGATAAAGATGGCATAGTAGTTTCTCTGGCCTGTT  476

seq1  GCTATATAACGGGTACA-GGAATGAATCTCAGTGGCTGAGCTGCCCCACA  541
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCTATATAACGGGTACAGGGAATGAATCTCAGTGGCTGAGCTGCCCCACA  526

seq1  TGTTAGCCTTAGCTCTCAGACTCATATGCCCACCTGACACTGTGTGTATC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCCTTAGCTCTCAGACTCATATGCCCACCTGACACTGTGTGTATC  576

seq1  GGTGGTACACCAGAGCCCTGCAATGGTCAGTCTCCTGTTCTATGGAGGGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTACACCAGAGCCCTGCAATGGTCAGTCTCCTGTTCTATGGAGGGA  626

seq1  AGGTGCCCCTGCTGGGAAGGCTTGCTGGTTGGGTTCTAGCTGCCTCTGCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCCCTGCTGGGAAGGCTTGCTGGTTGGGTTCTAGCTGCCTCTGCA  676

seq1  GAATCTTTGCGGTCTGCGTGCAAAGGCGTGCCCGTGCACAAAGGGCTGAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTGCGGTCTGCGTGCAAAGGCGTGCCCGTGCACAAAGGGCTGAC  726

seq1  AAGGCCGACTCCGGAGCCCTCAAGAGCAGTGTGGTCGTGGCAGGGCTGTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCGACTCCGGAGCCCTCAAGAGCAGTGTGGTCGTGGCAGGGCTGTC  776

seq1  CAGCTTCTGGCTTGGGGTGGCTACTTGTTTTGGGTCATATGCTCTTGTGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTGGCTTGGGGTGGCTACTTGTTTTGGGTCATATGCTCTTGTGG  826

seq1  GTTCCAAGAGCCTGCCTCTCTTTACTTGGTGTGATGGTGTAGCAGGCAGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAGAGCCTGCCTCTCTTTACTTGGTGTGATGGTGTAGCAGGCAGG  876

seq1  ATGCTGCCATCTCGAAGCTCATGCTACAGAACCACACAGCCTCCTTACAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCCATCTCGAAGCTCATGCTACAGAACCACACAGCCTCCTTACAA  926

seq1  GCCACACCTCAGAATTAGTGCTTTGCTTTTGTTTACAAACACCACCACAC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCTCAGAATTAGTGCTTTGCTTTTGTTTACAAACACCACCACAC  976

seq1  TTACTTGTGTGGGTGCACGTGTGCCCTGGCATACGTGGAGGTCAGAGGAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGTGTGGGTGCACGTGTGCCCTGGCATACGTGGAGGTCAGAGGAC  1026

seq1  AACAGTCCTTCCACAGTGTGGGTTCCTGGGGACTGAATTC  1081
      ||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCCTTCCACAGTGTGGGTTCCTGGGGACTGAATTC  1066