BAC Information

Click to search

BAC

Clone NameB6Ng01-036L02
Chromosome9 (Build37)
Map Location 47,163,082 - 47,281,531
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667890, 2900052N01Rik, D930036J05
Downstream geneCadm1, LOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036L02.bB6Ng01-036L02.g
ACCDH864782DH864783
length845243
definitionDH864782|Mus musculus domesticus DNA, BAC clone: B6Ng01-036L02, 5' end.DH864783|Mus musculus domesticus DNA, BAC clone: B6Ng01-036L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,163,082 - 47,163,908)(47,281,289 - 47,281,531)
sequence
gaattccaagggctccgagaagagagtgaggcgcttgccccagatttgtc
tgacacatcgtggtcacgtggactccattagtggatgactgaggcgttga
gcagacagcctagaggaatgttgtagaaaggctgaagaggagccctgagt
gatgtcaggaggaggctgatgcctctgggtgtctcagggcactcacccca
cacatccccacagggaggggagctctaattggcaatatcacccgcctagt
cgccgccctacctcttaaacatcgtgccagtgtaagggggacacagagct
acagtcccatgtgacacaaggagaggcatacctcagctgatcctgcctct
gtcgagcaagtaaagcatgcaaatggagccccagcctgtcactaggacta
gccatttttcccaaagatgccccagcaaggttagcattaggaaaagcgtg
ggttgtgcagaaagagcaggaatgaggacaatatgatatgattccctacg
ctgggtcatccttgatgacaggtgggtcccctgggtgcagatgccttaga
tgcctggtaagcacctcacttctgagccttcagcactgttctgaaaagtc
tttctgggactgtttgggggaaacactctctctgggtagaggaagggttt
gggaacatttccagaatacgtttgaggtgggactgataagttagattgaa
gagggaggacagacctgagtgctccattgactttcattttgtttgaagaa
ttggattatcacctcgttagcccaggctactggtttcaggttcctgcctc
catctccaaaatgaagaaattggccatggtgggccaccacttctg
taacctgatgctcatcgctgtgtgttatacacagagacctaacattattg
agttacttgaaagtgtgagtatgcttatgggaagacaggcaaggaggtcc
ttgggaagggtaccaactccaaatgccacctagccaggtgtcaggcggtg
gcacccaaagaggagggcagatttgtcattggctcgccattgtgttaaat
gaagtctcatactttgaaatcattcttgggggggtgggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_47163082_47163908
seq2: B6Ng01-036L02.b_43_887

seq1  GAATTCCAAGGGCTCCGAGAAGAGAGTGAGGCGCTTGCCCCAGATTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGGCTCCGAGAAGAGAGTGAGGCGCTTGCCCCAGATTTGTC  50

seq1  TGACACATCGTGGTCACGTGGACTCCATTAGTGGATGACTGAGGCGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATCGTGGTCACGTGGACTCCATTAGTGGATGACTGAGGCGTTGA  100

seq1  GCAGACAGCCTAGAGGAATGTTGTAGAAAGGCTGAAGAGGAGCCCTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGCCTAGAGGAATGTTGTAGAAAGGCTGAAGAGGAGCCCTGAGT  150

seq1  GATGTCAGGAGGAGGCTGATGCCTCTGGGTGTCTCAGGGCACTCACCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAGGAGGAGGCTGATGCCTCTGGGTGTCTCAGGGCACTCACCCCA  200

seq1  CACATCCCCACAGGGAGGGGAGCTCTAATTGGCAATATCACCCGCCTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCCCACAGGGAGGGGAGCTCTAATTGGCAATATCACCCGCCTAGT  250

seq1  CGCCGCCCTACCTCTTAAACATCGTGCCAGTGTAAGGGGGACACAGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCCCTACCTCTTAAACATCGTGCCAGTGTAAGGGGGACACAGAGCT  300

seq1  ACAGTCCCATGTGACACAAGGAGAGGCATACCTCAGCTGATCCTGCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCCATGTGACACAAGGAGAGGCATACCTCAGCTGATCCTGCCTCT  350

seq1  GTCGAGCAAGTAAAGCATGCAAATGGAGCCCCAGCCTGTCACTAGGACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAGCAAGTAAAGCATGCAAATGGAGCCCCAGCCTGTCACTAGGACTA  400

seq1  GCCATTTTTCCCAAAGATGCCCCAGCAAGGTTAGCATTAGGAAAAGCGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTTCCCAAAGATGCCCCAGCAAGGTTAGCATTAGGAAAAGCGTG  450

seq1  GGTTGTGCAGAAAGAGCAGGAATGAGGACAATATGATATGATTCCCTACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGCAGAAAGAGCAGGAATGAGGACAATATGATATGATTCCCTACG  500

seq1  CTGGGTCATCCTTGATGACAGGTGGGTCCCCTGGGTGCAGATGCCTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCATCCTTGATGACAGGTGGGTCCCCTGGGTGCAGATGCCTTAGA  550

seq1  TGCCTGGTAAGCACCTCACTTCTGAGCC-TCAGCACTG-TCTGAAAAGTC  598
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  TGCCTGGTAAGCACCTCACTTCTGAGCCTTCAGCACTGTTCTGAAAAGTC  600

seq1  TTTCT-GGACTGTT--GGGGAAACACTCTC-CTGGGTAGAGGAAGGGTTT  644
      ||||| ||||||||  |||||||||||||| |||||||||||||||||||
seq2  TTTCTGGGACTGTTTGGGGGAAACACTCTCTCTGGGTAGAGGAAGGGTTT  650

seq1  GGGAACA-TTCCAGAATACG-TTGAGGTGGGACTGAT-AGGTAGA-TGAA  690
      ||||||| |||||||||||| |||||||||||||||| || |||| ||||
seq2  GGGAACATTTCCAGAATACGTTTGAGGTGGGACTGATAAGTTAGATTGAA  700

seq1  GAGGGAGGACAGACCTGAGTGCTACATTGAC-TTCA-TTTGTTTGA--GA  736
      ||||||||||||||||||||||| ||||||| |||| |||||||||   |
seq2  GAGGGAGGACAGACCTGAGTGCTCCATTGACTTTCATTTTGTTTGAAGAA  750

seq1  TTGGA-TATCACCACG-TAGCCCAGGCTACTGG-TTCAGGTTCCTGCCTC  783
      ||||| ||||||| || |||||||||||||||| ||||||||||||||||
seq2  TTGGATTATCACCTCGTTAGCCCAGGCTACTGGTTTCAGGTTCCTGCCTC  800

seq1  CATCTCCAAAATGAAGAAATTGCACAT-GTGTGCCACCACATCTG  827
      ||||||||||||||||||||||  ||| ||| |||||||| ||||
seq2  CATCTCCAAAATGAAGAAATTGGCCATGGTGGGCCACCACTTCTG  845

seq1: chr9_47281289_47281531
seq2: B6Ng01-036L02.g_72_314 (reverse)

seq1  CCACCCCCACCCCCCCAAGAATGATTTCAAAGTATGAGACTTCATTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCACCCCCCCAAGAATGATTTCAAAGTATGAGACTTCATTTAAC  50

seq1  ACAATGGCGAGCCAATGACAAATCTGCCCTCCTCTTTGGGTGCCACCGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGCGAGCCAATGACAAATCTGCCCTCCTCTTTGGGTGCCACCGCC  100

seq1  TGACACCTGGCTAGGTGGCATTTGGAGTTGGTACCCTTCCCAAGGACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCTGGCTAGGTGGCATTTGGAGTTGGTACCCTTCCCAAGGACCTC  150

seq1  CTTGCCTGTCTTCCCATAAGCATACTCACACTTTCAAGTAACTCAATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTGTCTTCCCATAAGCATACTCACACTTTCAAGTAACTCAATAAT  200

seq1  GTTAGGTCTCTGTGTATAACACACAGCGATGAGCATCAGGTTA  243
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTCTCTGTGTATAACACACAGCGATGAGCATCAGGTTA  243