BAC Information

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BAC

Clone NameB6Ng01-037J17
Chromosome9 (Build37)
Map Location 110,452,463 - 110,492,986
singlet/doubletdoublet
Overlap geneSetd2
Upstream geneFbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9
Downstream geneNradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037J17.bB6Ng01-037J17.g
ACCDH865412DH865413
length1,181446
definitionDH865412|Mus musculus domesticus DNA, BAC clone: B6Ng01-037J17, 5' end.DH865413|Mus musculus domesticus DNA, BAC clone: B6Ng01-037J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,491,782 - 110,492,986)(110,452,463 - 110,452,914)
sequence
gaattcttaaaaagttaccaagctacgcaagcgtttttcaacctacctgt
gctctccttttcagtttgacttttctttggaatccgatacacctcctgca
aaacaacaaaaaacacacacaaaaaaatgagttagcagtgtagaggtgat
aagatcataggtctgaaactgataacataaagctacaggaaggccaggaa
aacacactacaaggaaaatagattgattggtaagtaagtattctctgaaa
cttaatacgtttggctttaaataaaataggatctggcccgatgaaaatga
atctattttctgagaattctaataattcttgaatgcattctgcatatata
tatatatatattcctgcaaaaatcaggtagaagtcatctgctgtttcttt
actgagtgtattcataaggacaattctaatatctcacctacaatccccac
actaagagcagtaaactcagttaaaaaagtataaagacaatacctgctat
tcagcaaattatttttgctggggatggaaaccagtttctcacatacccca
agcaagcattccaccactgagctatgttccatcccaccactgccacatcc
tttgccatgctagagaaaaaatttagtgtctttgcacacactaggcaatt
caatgtatttttctatggatgcaaaaccaaccctgctaatggcgaaatta
tctactttcataaggctatgaaggaggaagaagaaggggaagggggcaat
gatgaacactattaggtcatcaacactcccaaaatggcatctaataccgt
accaaattgatcatgaagaatataaactgtttttatgccttgaactatgt
ttacttacagggtaattcctaagaacatactttgctggtctgtcaattcc
acactattctagtagatgggcctaagttcttacccaactactgactcaag
tgagccataatgatgagctacacattctcaatggtttacattgatactct
ctctcctttataattgtgtatattaccattacccatttagctgatatcac
ctatggtgaccagtgatcatattgaaaagtattcagaaactcattccaac
tttatctagtattggggaattagaaatggtcccattatagacaatataac
gttcaaatgaatttaagagcatggtacaggc
catattgcatgagagaagaggaagaccagaaatccccttagatgaggaac
aaagaggccatacacatatttctgatgattcagaagtggtatttccttat
gatttgaacttgaccatggaagacagtgatggtataacctacaccttaaa
atgtgatagtagtggaaatgctccagagattgtatctactgtccatgaag
actattctggatcttctgcaagttcaagcgatgaaagtgattctgaagat
acagagtctgatgatagcagtattccaagaaaccgactccagtctgttgt
ggttgtgccaaagaattctactttgcccatggaagagacaagtccctgtt
cttctcggagcagtcagagctacaaacattattctgaccgctgggaagat
ggattagagaccaggagacatgcatatgaggaagagtatgagagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110491782_110492986
seq2: B6Ng01-037J17.b_45_1225 (reverse)

seq1  GCCTGTACCACCATGCTCTCTTAAATATTTCATTTTGAACCGTCAT-TTG  49
      ||||||   ||||||  ||||||||   |||| |||||| ||| || |||
seq2  GCCTGT---ACCATG--CTCTTAAA---TTCA-TTTGAA-CGTTATATTG  40

seq1  TCT-TATGTGGACTATTTCTCATTTCCCCCAAATACTAGATTAAAGTGTG  98
      ||| ||   |||| |||||| |||   ||| ||||||||| |||||| ||
seq2  TCTATAATGGGACCATTTCTAATT---CCCCAATACTAGA-TAAAGT-TG  85

seq1  AGATGAGTTTTCTTGGAATACCTTTTCAATATTGGATCACTGGGTCA-CA  147
        ||||| |||||  ||||| |||||||||||  ||||||| ||||| ||
seq2  GAATGAG-TTTCT--GAATA-CTTTTCAATAT--GATCACT-GGTCACCA  128

seq1  TAGGTGATATCCAGGCTACATGGGTATGGTTAATATTACACAATTATAAA  197
      |||||||||||   |||| |||||||  | ||||| ||||||||||||||
seq2  TAGGTGATATC--AGCTAAATGGGTAATGGTAATA-TACACAATTATAAA  175

seq1  GGGAGAGAGAGTATCATTGTATACCATTGAGAATGTGTAGGCTCATCATT  247
       ||||||||||||||| |||| ||||||||||||||||| ||||||||||
seq2  -GGAGAGAGAGTATCAATGTAAACCATTGAGAATGTGTA-GCTCATCATT  223

seq1  ATGGCTCACTTGAGTCAGTAGTTGGGTAAGAACTTAGGCCCATCTACTAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCACTTGAGTCAGTAGTTGGGTAAGAACTTAGGCCCATCTACTAG  273

seq1  AATAGTGTGGAATTGACAGACCAGCAAAGTATGTTCTTAGGAATTACCCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGTGGAATTGACAGACCAGCAAAGTATGTTCTTAGGAATTACCCT  323

seq1  GTAAGTAAACATAGTTCAAGGCATAAAAACAGTTTATATTCTTCATGATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAAACATAGTTCAAGGCATAAAAACAGTTTATATTCTTCATGATC  373

seq1  AATTTGGTACGGTATTAGATGCCATTTTGGGAGTGTTGATGACCTAATAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGTACGGTATTAGATGCCATTTTGGGAGTGTTGATGACCTAATAG  423

seq1  TGTTCATCATTGCCCCCTTCCCCTTCTTCTTCCTCCTTCATAGCCTTATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATCATTGCCCCCTTCCCCTTCTTCTTCCTCCTTCATAGCCTTATG  473

seq1  AAAGTAGATAATTTCGCCATTAGCAGGGTTGGTTTTGCATCCATAGAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGATAATTTCGCCATTAGCAGGGTTGGTTTTGCATCCATAGAAAA  523

seq1  ATACATTGAATTGCCTAGTGTGTGCAAAGACACTAAATTTTTTCTCTAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGAATTGCCTAGTGTGTGCAAAGACACTAAATTTTTTCTCTAGC  573

seq1  ATGGCAAAGGATGTGGCAGTGGTGGGATGGAACATAGCTCAGTGGTGGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAAGGATGTGGCAGTGGTGGGATGGAACATAGCTCAGTGGTGGAA  623

seq1  TGCTTGCTTGGGGTATGTGAGAAACTGGTTTCCATCCCCAGCAAAAATAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTTGGGGTATGTGAGAAACTGGTTTCCATCCCCAGCAAAAATAA  673

seq1  TTTGCTGAATAGCAGGTATTGTCTTTATACTTTTTTAACTGAGTTTACTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGAATAGCAGGTATTGTCTTTATACTTTTTTAACTGAGTTTACTG  723

seq1  CTCTTAGTGTGGGGATTGTAGGTGAGATATTAGAATTGTCCTTATGAATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGTGTGGGGATTGTAGGTGAGATATTAGAATTGTCCTTATGAATA  773

seq1  CACTCAGTAAAGAAACAGCAGATGACTTCTACCTGATTTTTGCAGGAATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGTAAAGAAACAGCAGATGACTTCTACCTGATTTTTGCAGGAATA  823

seq1  TATATATATATATATGCAGAATGCATTCAAGAATTATTAGAATTCTCAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATGCAGAATGCATTCAAGAATTATTAGAATTCTCAGA  873

seq1  AAATAGATTCATTTTCATCGGGCCAGATCCTATTTTATTTAAAGCCAAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATTCATTTTCATCGGGCCAGATCCTATTTTATTTAAAGCCAAAC  923

seq1  GTATTAAGTTTCAGAGAATACTTACTTACCAATCAATCTATTTTCCTTGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAGTTTCAGAGAATACTTACTTACCAATCAATCTATTTTCCTTGT  973

seq1  AGTGTGTTTTCCTGGCCTTCCTGTAGCTTTATGTTATCAGTTTCAGACCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTTTCCTGGCCTTCCTGTAGCTTTATGTTATCAGTTTCAGACCT  1023

seq1  ATGATCTTATCACCTCTACACTGCTAACTCATTTTTTTGTGTGTGTTTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTTATCACCTCTACACTGCTAACTCATTTTTTTGTGTGTGTTTTT  1073

seq1  TGTTGTTTTGCAGGAGGTGTATCGGATTCCAAAGAAAAGTCAAACTGAAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTTGCAGGAGGTGTATCGGATTCCAAAGAAAAGTCAAACTGAAA  1123

seq1  AGGAGAGCACAGGTAGGTTGAAAAACGCTTGCGTAGCTTGGTAACTTTTT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGCACAGGTAGGTTGAAAAACGCTTGCGTAGCTTGGTAACTTTTT  1173

seq1  AAGAATTC  1205
      ||||||||
seq2  AAGAATTC  1181

seq1: chr9_110452463_110452914
seq2: B6Ng01-037J17.g_70_521

seq1  GAATTCCATATTGCATGAGAGAAGAGGAAGACCAGAAATCCCCTTAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATTGCATGAGAGAAGAGGAAGACCAGAAATCCCCTTAGATG  50

seq1  AGGAACAAAGAGGCCATACACATATTTCTGATGATTCAGAAGTGGTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAAAGAGGCCATACACATATTTCTGATGATTCAGAAGTGGTATTT  100

seq1  CCTTATGATTTGAACTTGACCATGGAAGACAGTGATGGTATAACCTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGATTTGAACTTGACCATGGAAGACAGTGATGGTATAACCTACAC  150

seq1  CTTAAAATGTGATAGTAGTGGAAATGCTCCAGAGATTGTATCTACTGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATGTGATAGTAGTGGAAATGCTCCAGAGATTGTATCTACTGTCC  200

seq1  ATGAAGACTATTCTGGATCTTCTGCAAGTTCAAGCGATGAAAGTGATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACTATTCTGGATCTTCTGCAAGTTCAAGCGATGAAAGTGATTCT  250

seq1  GAAGATACAGAGTCTGATGATAGCAGTATTCCAAGAAACCGACTCCAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATACAGAGTCTGATGATAGCAGTATTCCAAGAAACCGACTCCAGTC  300

seq1  TGTTGTGGTTGTGCCAAAGAATTCTACTTTGCCCATGGAAGAGACAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGGTTGTGCCAAAGAATTCTACTTTGCCCATGGAAGAGACAAGTC  350

seq1  CCTGTTCTTCTCGGAGCAGTCAGAGCTACAAACATTATTCTGACCGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTTCTCGGAGCAGTCAGAGCTACAAACATTATTCTGACCGCTGG  400

seq1  GAAGATGGATTAGAGACCAGGAGACATGCATATGAGGAAGAGTATGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGATTAGAGACCAGGAGACATGCATATGAGGAAGAGTATGAGAG  450

seq1  TA  452
      ||
seq2  TA  452