BAC Information

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BAC

Clone NameB6Ng01-038M11
Chromosome9 (Build37)
Map Location 24,208,178 - 24,209,335
singlet/doubletsinglet
Overlap genenone
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893, Npsr1
Downstream geneDpy19l1, Cypt4, Tbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038M11.bB6Ng01-038M11.g
ACCDH866237DH866238
length1,1821,136
definitionDH866237|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M11, 5' end.DH866238|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaagtcaaaacaaccctgagat
tccacctcacaccactcagaagggctaaaatcaaaaattcaggtgacagc
agacactggcgaggatgtagagaaagaggaatactcctccattgttggtg
gaattgcaaacttgtacaaccactctggaagtcagtttggtagttcctca
gaaaattggacatagtactaacagaagatccagcaatacctctcctgggc
atatacccagaatatttttcaactgataataaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaatccagat
gtccctcaacagaaggatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctactaaaaacaatgaatttatgaaatccttaggcaa
atggatggacctggaggatatcatcctgagtgaggtaacccaatcacaaa
agaacacacatgatatgcactcactgagaagtggatattagcccagaaac
atagaatacccaagatacaatttgcaaaacacatgaaactcaagaaggaa
gaccgaagtgtggatacttcattccttcttagaatggcgaacaaaatacc
catggaaggagttgaagaaacaaagttcagagcaaaacctgaaggaaaga
ccatccagagactgctccacttggggatccaccctataaacaaccaccaa
acccagtcactaggaagatgccaagaagagcctgcctgatatagctgtct
cctgggaggctctgccagtgccttgcaaatgcagaagtgaaagatcacag
tcatccattggatggagcacaagtctccatgaagagccagagaaaaccca
ggtagctgaagggactgaagccctatagagaacatcatatgactaaccag
taccccagagctccttgaaactataccaccatcaaaaaacacatggtgga
acttgtgctctagctatattgtagccaagatgatgcctagtagtcatcaa
tggagagaggcccttgtctgtgaagtctagctccagatagggaggccgaa
cagcatggggagtgggtgtgggttgggaacag
gaattctctacgggtgtgccccccccccaattttgggttgtagttaattc
cagatgtagtgaagttgacaactaagaacaaccgccacagaccaccatgc
ctggtgtgctaacatttcagaacctgctttccatgcttcatttcggggtt
cccaccgtttttgaggtccctgcccagtcaaaataggtaaggtatatctc
aagtacatcgttttattaacaaccattgatgggtttgggccttttgatca
gccaatgaattacttggtgaacaagcatgagaactgtagttgggtccaca
gcatccaggaaacaaaactgggaaccgtgggaaggtcgagacaagaggat
gcctggcacttgctagccagtctagacaaggaaacggttctcagttaaac
accatggctccaaaaataagacgaagcacaatttacgaagatgcctgacc
ttgactcctgacccctgacctctacacatatctgcaaacatgtatataca
agcatgaacacgtacaagcgtagacaaagtgattgttagttcttgcacta
tttctactcatcatggaactcagttgtgcttgtctatttaaaaacttcaa
tatacagttgcatcttttgcacatgacaaagcctgaggaaggaggaacag
tttaaatttcactcatttataagtcctggctagtgtgccagttagaaatt
caaagaaaaaagatacttcaaaagttactttgaccatttaatatatatga
aaaaatcaacttccttctctttgtgtgtgtgttttacacgtttcttgatc
agtgtctactttgagatgcagcttaagtgtcactttctctgtgaagcctt
ccctgactgactgtcatgtggccacgtgaactgtcccttcccccttgtct
catcatccatgagctctgtacatttactaacatgactttccctatactgc
attgcatcctcacagaagaatgtgtgtccttcctcattgtgagttcgcat
gctttctggcatgatactagcagtatgaagcttatgtatttaaaaaaact
atactttctatttacaatatggtaattctagggcgcataaacatttttca
accaaaaaaaaaaaagagtttgtgtctatgaagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_24208178_24209335
seq2: B6Ng01-038M11.g_66_1201 (reverse)

seq1  TTACTTTCCATAGACTACATAAAACTCTTTTTTTTTTTTTTTGGTTTGAA  50
      ||||||  ||||||| ||   ||||||||||||||||||    | |||||
seq2  TTACTT--CATAGAC-AC---AAACTCTTTTTTTTTTTT----GGTTGAA  40

seq1  AAAATATGTTTTATGCGCCCTAGAATTTACCATATTGTAAATAGAAAGTA  100
      ||   ||| |||||||||||||||| ||||||||||||||||||||||||
seq2  AA---ATG-TTTATGCGCCCTAGAA-TTACCATATTGTAAATAGAAAGTA  85

seq1  TAGTTTTTTTAAAATATCATTAAGCTTCATTACTTGCTAGTATCATTGCC  150
      |||||||||| ||||| || ||||||||| ||| ||||||||||| ||||
seq2  TAGTTTTTTT-AAATA-CA-TAAGCTTCA-TAC-TGCTAGTATCA-TGCC  129

seq1  AGAAGGCATGCGAACTCACAATGAGGAAGGACACACATTTCTTCTGTGAG  200
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAAGCATGCGAACTCACAATGAGGAAGGACACACA-TTCTTCTGTGAG  178

seq1  GATGCAATGCAGTATAGGGAAAGTCATGTTAGTAAATGTACAGAGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAATGCAGTATAGGGAAAGTCATGTTAGTAAATGTACAGAGCTCAT  228

seq1  GGATGATGAGACAAGGGGGAAGGGACAGTTCACGTGGCCACATGACAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATGAGACAAGGGGGAAGGGACAGTTCACGTGGCCACATGACAGTC  278

seq1  AGTCAGGGAAGGCTTCACAGAGAAAGTGACACTTAAGCTGCATCTCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGGAAGGCTTCACAGAGAAAGTGACACTTAAGCTGCATCTCAAAG  328

seq1  TAGACACTGATCAAGAAACGTGTAAAACACACACACAAAGAGAAGGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACTGATCAAGAAACGTGTAAAACACACACACAAAGAGAAGGAAGT  378

seq1  TGATTTTTTCATATATATTAAATGGTCAAAGTAACTTTTGAAGTATCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTCATATATATTAAATGGTCAAAGTAACTTTTGAAGTATCTTT  428

seq1  TTTCTTTGAATTTCTAACTGGCACACTAGCCAGGACTTATAAATGAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGAATTTCTAACTGGCACACTAGCCAGGACTTATAAATGAGTGA  478

seq1  AATTTAAACTGTTCCTCCTTCCTCAGGCTTTGTCATGTGCAAAAGATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAACTGTTCCTCCTTCCTCAGGCTTTGTCATGTGCAAAAGATGCA  528

seq1  ACTGTATATTGAAGTTTTTAAATAGACAAGCACAACTGAGTTCCATGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATATTGAAGTTTTTAAATAGACAAGCACAACTGAGTTCCATGATG  578

seq1  AGTAGAAATAGTGCAAGAACTAACAATCACTTTGTCTACGCTTGTACGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAATAGTGCAAGAACTAACAATCACTTTGTCTACGCTTGTACGTG  628

seq1  TTCATGCTTGTATATACATGTTTGCAGATATGTGTAGAGGTCAGGGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCTTGTATATACATGTTTGCAGATATGTGTAGAGGTCAGGGGTCA  678

seq1  GGAGTCAAGGTCAGGCATCTTCGTAAATTGTGCTTCGTCTTATTTTTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAAGGTCAGGCATCTTCGTAAATTGTGCTTCGTCTTATTTTTGGA  728

seq1  GCCATGGTGTTTAACTGAGAACCGTTTCCTTGTCTAGACTGGCTAGCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGTGTTTAACTGAGAACCGTTTCCTTGTCTAGACTGGCTAGCAAG  778

seq1  TGCCAGGCATCCTCTTGTCTCGACCTTCCCACGGTTCCCAGTTTTGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCATCCTCTTGTCTCGACCTTCCCACGGTTCCCAGTTTTGTTTC  828

seq1  CTGGATGCTGTGGACCCAACTACAGTTCTCATGCTTGTTCACCAAGTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGCTGTGGACCCAACTACAGTTCTCATGCTTGTTCACCAAGTAAT  878

seq1  TCATTGGCTGATCAAAAGGCCCAAACCCATCAATGGTTGTTAATAAAACG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGCTGATCAAAAGGCCCAAACCCATCAATGGTTGTTAATAAAACG  928

seq1  ATGTACTTGAGATATACCTTACCTATTTTGACTGGGCAGGGACCTCAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTGAGATATACCTTACCTATTTTGACTGGGCAGGGACCTCAAAA  978

seq1  ACGGTGGGAACCCCGAAATGAAGCATGGAAAGCAGGTTCTGAAATGTTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGGGAACCCCGAAATGAAGCATGGAAAGCAGGTTCTGAAATGTTAG  1028

seq1  CACACCAGGCATGGTGGTCTGTGGCGGTTGTTCTTAGTTGTCAACTTCAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGGCATGGTGGTCTGTGGCGGTTGTTCTTAGTTGTCAACTTCAC  1078

seq1  TACATCTGGAATTAACTACAACCCAAAATTGGGGGGGGGGCACACCCGTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTGGAATTAACTACAACCCAAAATTGGGGGGGGGGCACACCCGTA  1128

seq1  GAGAATTC  1158
      ||||||||
seq2  GAGAATTC  1136