BAC Information

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BAC

Clone NameB6Ng01-038N10
Chromosome9 (Build37)
Map Location 111,306,103 - 111,347,282
singlet/doubletdoublet
Overlap geneDclk3
Upstream genePtpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1
Downstream geneLOC620615, Stac, 4930545L08Rik, Arpp21, LOC100039341, LOC620760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038N10.bB6Ng01-038N10.g
ACCDH866283DH866284
length1,0281,067
definitionDH866283|Mus musculus domesticus DNA, BAC clone: B6Ng01-038N10, 5' end.DH866284|Mus musculus domesticus DNA, BAC clone: B6Ng01-038N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,346,706 - 111,347,282)(111,306,103 - 111,307,184)
sequence
gaattccatggatgaaataaaacataaattatttgtctgttttgaaaaga
ttattactctgtttatttgtgtgtgtacacgtgtgtgaattggttctctc
cttcagttgtgagggttttaggatttggactcaggttatcagacttggtg
taaagtaccttcactgagccatcataccaacccagtatactctctctctc
cctttcccaccctccctccctcccttcctctccctcccttcctctccctc
cctctctctccttgacttattttgctgagcatgataatgcccagtttaat
ttgtttccgtttcatctttctttgtgttgaattcactatagacatattat
agacacatttgtagacacaccctgtttccattatctgttcacccttgatg
gacttgcagatcccataccctaattattgtgaatagcactacaataaaca
caggcattcaatattatatttctactatgtactgattttgattattgact
ttggttacatatttatgagcagtataagtggatcacgtgcttgtggtatt
ttcatggttgtttgtttttaagtccttccatattgatttccagagtgctt
gactgatttataatcccatctacagtgcataaaggttgtcccccaccccc
accaacatctgttatttgttttctggaagacaaacgttctgactggagtg
acctagaatctcagtgtgcaccctcattgcccatcagcttttgtccctag
gttagaattatccatgtcaacatcagatcatcccaggcccaccacactgt
gataggaccaataacctgtgtgttcctgaatccgcaaggccagaatgaga
gaggccatttggtgggaaggaactgactcatgagggctgattctaggaca
tctgaaagcagctggattagatccaacacccacaaagacacattctaata
cagcatccttggctgtcttcagctcagtctagcagatcttccagcgtcct
gagttggcctactgtcgtccacacactg
gaattctagtattacttccatcaagagctttccaaggggctgggaatgta
gctcagttggcagagcgctggactggcatatatgaagccctgggtttgac
ctccagtgctgcataagaccagatgtagtagtgcatgcttgtaaccccag
cgcttgggagatagaggcaggaggatacgttcaaggttatcctcagctac
acagtgaattagacgtcacattgactaagactttgtccccaaatagacat
ttccaggttgacattttcaaaaaggattacttatttttggtgcgtgcatg
tgttgttgcatgtcagttcatgcactccgtgagtccctggtgtccacaga
ggccagaagaaggtatcagactctttgaggttactggagttacagatggt
tgtaagccaccacatggcatctgggaactgaatccagggcttctggaaga
gcaggcggtggtcttaaaccactgaggcatctctccagccacccccaacc
caacacgtaaacattttaaagcaaagttaagtccttttagaatataagta
gatcctatttaaactgacaggacacatgcactggaggaggcagaacatag
ctcctaggcaaagctatagagtaggtacaatacttgtagtctgtctgtct
gtctgtctgtctgtctctgtgtttctgtacatgtatgcagggaactgggg
cacacaggaggaaagggtgcatatgagtgaatttcttgcccattcctttc
cttctttgcactactttcaaagtttaaaaaatatgtatgcaggctgcctg
agggtgtccagatggaactaaagccactgtagctaagtccaaacaaacca
gagtctgggaatgtttctgagacgcagcccttggccaaggaacgaactct
gtttcgtctaccctcgctactggggatatttaaaagagaagtgggagcat
gcacatgaggatgaaaattcgttcgtcatctttgtgctgacagagtgggt
ggtgtgttgaggtcatgcagcagagggacattctgctcatgttggtggat
gtctgtctggcttaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_111346706_111347282
seq2: B6Ng01-038N10.b_44_620 (reverse)

seq1  AAGGACTTAAAAACAAACAACCATGAAAATACCACAAGCACGTGATCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTTAAAAACAAACAACCATGAAAATACCACAAGCACGTGATCCAC  50

seq1  TTATACTGCTCATAAATATGTAACCAAAGTCAATAATCAAAATCAGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTGCTCATAAATATGTAACCAAAGTCAATAATCAAAATCAGTACA  100

seq1  TAGTAGAAATATAATATTGAATGCCTGTGTTTATTGTAGTGCTATTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGAAATATAATATTGAATGCCTGTGTTTATTGTAGTGCTATTCACA  150

seq1  ATAATTAGGGTATGGGATCTGCAAGTCCATCAAGGGTGAACAGATAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGGGTATGGGATCTGCAAGTCCATCAAGGGTGAACAGATAATGG  200

seq1  AAACAGGGTGTGTCTACAAATGTGTCTATAATATGTCTATAGTGAATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGGTGTGTCTACAAATGTGTCTATAATATGTCTATAGTGAATTCA  250

seq1  ACACAAAGAAAGATGAAACGGAAACAAATTAAACTGGGCATTATCATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGAAAGATGAAACGGAAACAAATTAAACTGGGCATTATCATGCT  300

seq1  CAGCAAAATAAGTCAAGGAGAGAGAGGGAGGGAGAGGAAGGGAGGGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAATAAGTCAAGGAGAGAGAGGGAGGGAGAGGAAGGGAGGGAGAG  350

seq1  GAAGGGAGGGAGGGAGGGTGGGAAAGGGAGAGAGAGAGTATACTGGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAGGGAGGGAGGGTGGGAAAGGGAGAGAGAGAGTATACTGGGTTG  400

seq1  GTATGATGGCTCAGTGAAGGTACTTTACACCAAGTCTGATAACCTGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATGGCTCAGTGAAGGTACTTTACACCAAGTCTGATAACCTGAGTC  450

seq1  CAAATCCTAAAACCCTCACAACTGAAGGAGAGAACCAATTCACACACGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTAAAACCCTCACAACTGAAGGAGAGAACCAATTCACACACGTG  500

seq1  TACACACACAAATAAACAGAGTAATAATCTTTTCAAAACAGACAAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACAAATAAACAGAGTAATAATCTTTTCAAAACAGACAAATAAT  550

seq1  TTATGTTTTATTTCATCCATGGAATTC  577
      |||||||||||||||||||||||||||
seq2  TTATGTTTTATTTCATCCATGGAATTC  577

seq1: chr9_111306103_111307184
seq2: B6Ng01-038N10.g_67_1133

seq1  GAATTCTAGTATTACTTCCATCAAGAGCTTTCCAAGGGGCTGGGAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTATTACTTCCATCAAGAGCTTTCCAAGGGGCTGGGAATGTA  50

seq1  GCTCAGTTGGCAGAGCGCTGGACTGGCATATATGAAGCCCTGGGTTTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTGGCAGAGCGCTGGACTGGCATATATGAAGCCCTGGGTTTGAC  100

seq1  CTCCAGTGCTGCATAAGACCAGATGTAGTAGTGCATGCTTGTAACCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGCTGCATAAGACCAGATGTAGTAGTGCATGCTTGTAACCCCAG  150

seq1  CGCTTGGGAGATAGAGGCAGGAGGATACGTTCAAGGTTATCCTCAGCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGGGAGATAGAGGCAGGAGGATACGTTCAAGGTTATCCTCAGCTAC  200

seq1  ACAGTGAATTAGACGTCACATTGACTAAGACTTTGTCCCCAAATAGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAATTAGACGTCACATTGACTAAGACTTTGTCCCCAAATAGACAT  250

seq1  TTCCAGGTTGACATTTTCAAAAAGGATTACTTATTTTTGGTGCGTGCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTTGACATTTTCAAAAAGGATTACTTATTTTTGGTGCGTGCATG  300

seq1  TGTTGTTGCATGTCAGTTCATGCACTCCGTGAGTCCCTGGTGTCCACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGCATGTCAGTTCATGCACTCCGTGAGTCCCTGGTGTCCACAGA  350

seq1  GGCCAGAAGAAGGTATCAGACTCTTTGAGGTTACTGGAGTTACAGATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAAGAAGGTATCAGACTCTTTGAGGTTACTGGAGTTACAGATGGT  400

seq1  TGTAAGCCACCACATGGCATCTGGGAACTGAATCCAGGGCTTCTGGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCCACCACATGGCATCTGGGAACTGAATCCAGGGCTTCTGGAAGA  450

seq1  GCAGGCGGTGGTCTTAAACCACTGAGGCATCTCTCCAGCCACCCCCAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCGGTGGTCTTAAACCACTGAGGCATCTCTCCAGCCACCCCCAACC  500

seq1  CAACACGTAAACATTTTAAAGCAAAGTTAAGTCCTTTTAGAATATAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACGTAAACATTTTAAAGCAAAGTTAAGTCCTTTTAGAATATAAGTA  550

seq1  GATCCTATTTAAACTGACAGGACACATGCACTGGAGGAGGCAGAACATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTATTTAAACTGACAGGACACATGCACTGGAGGAGGCAGAACATAG  600

seq1  CTCCTAGGCAAAGCTATAGAGTAGGTACAATACTTGTAGTCTGTCTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGGCAAAGCTATAGAGTAGGTACAATACTTGTAGTCTGTCTGTCT  650

seq1  GTCTGTCTGTCTGTCTCTGTGTTTCTGTACATGTATGCAGGGAACTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTGTCTGTCTCTGTGTTTCTGTACATGTATGCAGGGAACTGGGG  700

seq1  CACACAGGAGGAAAGGGTGCATATGAGTGAATTTCTTGCCCATTCCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGAGGAAAGGGTGCATATGAGTGAATTTCTTGCCCATTCCTTTC  750

seq1  CTTCTTTGCACTACTTTCAAAGTTTAAAAAATATGTATGCAGGCTGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGCACTACTTTCAAAGTTTAAAAAATATGTATGCAGGCTGCCTG  800

seq1  AGGGTGTCCAGATGGAACTAAAGCCACTGTAGCTAAGTCCAAACAAACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTCCAGATGGAACTAAAGCCACTGTAGCTAAGTCCAAACAAACCA  850

seq1  GAGTCTGGGAATGTTTCTGAGACGCAGCCCTTGGCCAAGGAACGAACTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGGGAATGTTTCTGAGACGCAGCCCTTGGCCAAGGAACGAACTCT  900

seq1  GTTTCGTCTACCCTCGCTACTGGGGATATTTTAAAAAGAGAAGTGGGAGC  950
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  GTTTCGTCTACCCTCGCTACTGGGGATATTT--AAAAGAGAAGTGGGAGC  948

seq1  ATGCAACATGAAGGGATGGAAAAATTCGTTCGTCATCTTTGTGCTGACAG  1000
      |||| ||||||  |||||  ||||||||||||||||||||||||||||| 
seq2  ATGC-ACATGA--GGATG--AAAATTCGTTCGTCATCTTTGTGCTGACA-  992

seq1  GAGTGGGT-GTGTGTTGGAGGGTCATGCAGGCAGAGGGACATTCTGCTCA  1049
      |||||||| ||||||||   ||||||||| ||||||||||||||||||||
seq2  GAGTGGGTGGTGTGTTG--AGGTCATGCA-GCAGAGGGACATTCTGCTCA  1039

seq1  TTGTTGGGTGGGATGTCTGTCCTTGGCTTAAGG  1082
       ||||||   |||||||||||  ||||||||||
seq2  -TGTTGG--TGGATGTCTGTC--TGGCTTAAGG  1067