BAC Information

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BAC

Clone NameB6Ng01-039F12
Chromosome9 (Build37)
Map Location 11,938,634 - 11,939,580
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039989, LOC622505, LOC100039680, LOC665285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039F12.bB6Ng01-039F12.g
ACCDH866639DH866640
length1,293945
definitionDH866639|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F12, 5' end.DH866640|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gtattaaacataaaactgaaattccttacaaccccatgggacaagaaata
gttaaacgtgctcatcgcaccttaaagaattggctctttaagacaaaaga
ggggcagctatatcccccaaggtcaccaaaggcccaccttgccttcacct
tatttgtcctaaatttcttgcacaccgatatcaagggccagtctgcagcg
gatcgccactggcatccagttacttctaattcttatgcattggtaaaatg
gaaggaccccctgactaatgaatggaagggtccagattcagttctaattt
ggggtaggggctcagtttgtgttttttcacgagatgaagatggagcgcgg
tggctgccagagagattaattcgtcagatgaacacagattctgactcttc
tggtaagtatcattctaaagactaaaattccttttgtgcttaaaattcag
ctgagagcaacagctctcaaagctgttttccagctactctctgagccagc
tcccgacagggacaggaggccggagactagcctcagctttacaatttgca
tttgaataaagtacctagacttccccgaaagaagttctgctttcctactt
tctcactgtctttcaagattttttctttcaagcaggtaaatcaacattct
cgaggcggaccagcggatgtgcatccccgcccccctagagcacgcaggtg
gcagctgttatccccagtctcaggacatttccagcacgtggttttcagtc
tgagttaaaaatttaggtttacctagagggctaaaagagtagatatttct
atattaataaagattggtttttattttgatagacaggcttagccccttag
ctgacctctggcttttcacccttgctgttactgcaaggtgtccttagctc
aataggctgtggaaaaacagggatgaggaggaacgacttccagctcctat
ttagcacaaatcgtggtgttactaacgacataattcttgcttaggctttg
ctaattctgaggtgatattctcctttaggagctacacaacactcaaaact
ggtgcatactgggttgttgattgtacaaattcagtatgacatcgcttggt
ggcaagtactgccaagggaagtccgcttgacacctctggttcctgtgaga
taacccggttaaaaggtggtatcatatttggtgaatcaaaatattccggc
ttgcctccgctccaagtacaagaccattggttccagatactccctggaat
cagtcctgtctctccagcccagggtaagagcacatttctagga
gaattctgcttaagtcttgatttagattttaaatgtatacaattgtgcac
aacggctattaaatacatgttttttaacttataaactataataaaaattc
ctgtcttttctctgtgctatcttctattaaacatttctatattaatatat
gcagactccacacaacccagtgtgtccactgaagatcttgcaaacttctt
cattcaggaaaatatattaggggccaaacaaattaactgtttaattttat
taaagccttcaacttttactcagcattaatcaagtggtattttcttttct
gtgtttatattcaattttcttagaatttttcttgaatttggcatttgacc
atttttatttatatttgaccattttgtataaagtacattctgttactata
atcccttttcttctctgaaagccctccaattcctgttattcttccctata
actttttatctacatgtactttttgtctcaaaactaacaataactacttg
ggatgtatttgacagtttttccgtggacatgtactgagatatatatatat
atatatatatatatatatatatatatatatatatatatataatcatacaa
tttgggtcaaataaatcttgtagaagcacttaaagatacaaaactttgga
ggcagtggcactgtagttgaagatgccctcacaatcaagaaacacatttc
tatttctaattctttgaagacatgaataacttggtgagaagtcccatgat
gtgtggagtggtagatgttttataacttaagagttaaacaaagtgctcca
aatattgggtcatagtggaaaccagggtagatttaatgcagatgttttgc
cttaggtcttaccaactgcatgtgggtagccaacaatgaaggatgaaatc
aaaaaatgtaatattttaagataagtcaacaaaagacatgaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_11938634_11939580
seq2: B6Ng01-039F12.g_66_1010 (reverse)

seq1  GAGTTCATGTTCTTTTTGTTGACTTATCTTGAAATATTACATTTTTCTGA  50
      ||||||||||   ||||||||||||||||| ||||||||||||||| |||
seq2  GAGTTCATGT--CTTTTGTTGACTTATCTTAAAATATTACATTTTT-TGA  47

seq1  TTTCATCCTTCATTGTTTGGCTACCCACAATGCAGTTGGTAAGACCTAAG  100
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  TTTCATCCTTCATTG-TTGGCTACCCAC-ATGCAGTTGGTAAGACCTAAG  95

seq1  GCAAAACATCTGCATTAAATCTACCCTGGTTTCCACTATGA-CCAATATT  149
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCAAAACATCTGCATTAAATCTACCCTGGTTTCCACTATGACCCAATATT  145

seq1  TGGAGCACTTTGTTTAACTCCTAAGTTATAAAACATCTACCACTCCACAC  199
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGGAGCACTTTGTTTAACTCTTAAGTTATAAAACATCTACCACTCCACAC  195

seq1  ATCATGGGACTTCTCACCAAGTTATTCATGTCTTCAAAGAATTAGAAATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGGACTTCTCACCAAGTTATTCATGTCTTCAAAGAATTAGAAATA  245

seq1  GAAATGTGTTTCTTGATTGTGAGGGCATCTTCAACTACAGTGCCACTGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGTTTCTTGATTGTGAGGGCATCTTCAACTACAGTGCCACTGCC  295

seq1  TCCAAAGTTTTGTATCTTTAAGTGCTTCTACAAGATTTATTTGACCCAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGTTTTGTATCTTTAAGTGCTTCTACAAGATTTATTTGACCCAAA  345

seq1  TTGTCTGAT--TTTATATATATATATATATATATATATATATATATATAT  397
      |||| ||||  | |||||||||||||||||||||||||||||||||||||
seq2  TTGTATGATTATATATATATATATATATATATATATATATATATATATAT  395

seq1  ATATATATATATCTCAGTACATGTCCACGGAAAAACTGTCAAATACATCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATCTCAGTACATGTCCACGGAAAAACTGTCAAATACATCC  445

seq1  CAAGTAGTTATTGTTAGTTTTGAGACAAAAAGTACATGTAGATAAAAAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGTTATTGTTAGTTTTGAGACAAAAAGTACATGTAGATAAAAAGT  495

seq1  TATAGGGAAGAATAACAGGAATTGGAGGGCTTTCAGAGAAGAAAAGGGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGAAGAATAACAGGAATTGGAGGGCTTTCAGAGAAGAAAAGGGAT  545

seq1  TATAGTAACAGAATGTACTTTATACAAAATGGTCAAATATAAATAAAAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTAACAGAATGTACTTTATACAAAATGGTCAAATATAAATAAAAAT  595

seq1  GGTCAAATGCCAAATTCAAGAAAAATTCTAAGAAAATTGAATATAAACAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAATGCCAAATTCAAGAAAAATTCTAAGAAAATTGAATATAAACAC  645

seq1  AGAAAAGAAAATACCACTTGATTAATGCTGAGTAAAAGTTGAAGGCTTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAATACCACTTGATTAATGCTGAGTAAAAGTTGAAGGCTTTA  695

seq1  ATAAAATTAAACAGTTAATTTGTTTGGCCCCTAATATATTTTCCTGAATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTAAACAGTTAATTTGTTTGGCCCCTAATATATTTTCCTGAATG  745

seq1  AAGAAGTTTGCAAGATCTTCAGTGGACACACTGGGTTGTGTGGAGTCTGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTTGCAAGATCTTCAGTGGACACACTGGGTTGTGTGGAGTCTGC  795

seq1  ATATATTAATATAGAAATGTTTAATAGAAGATAGCACAGAGAAAAGACAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAATATAGAAATGTTTAATAGAAGATAGCACAGAGAAAAGACAG  845

seq1  GAATTTTTATTATAGTTTATAAGTTAAAAAACATGTATTTAATAGCCGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTATTATAGTTTATAAGTTAAAAAACATGTATTTAATAGCCGTT  895

seq1  GTGCACAATTGTATACATTTAAAATCTAAATCAAGACTTAAGCAGAATTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAATTGTATACATTTAAAATCTAAATCAAGACTTAAGCAGAATTC  945