BAC Information

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BAC

Clone NameB6Ng01-039G19
Chromosome9 (Build37)
Map Location 82,240,097 - 82,379,685
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik, LOC100039085
Downstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039G19.bB6Ng01-039G19.g
ACCDH866699DH866700
length1,0501,180
definitionDH866699|Mus musculus domesticus DNA, BAC clone: B6Ng01-039G19, 5' end.DH866700|Mus musculus domesticus DNA, BAC clone: B6Ng01-039G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,378,631 - 82,379,685)(82,240,097 - 82,241,295)
sequence
gaattcattttatatttactgcattataaaaataaagccttttgtctaaa
gtgacttttaagttctaataaataatgaaagtcaaaatctatgtttagaa
tttgatgccatttggttatcactgagaaaaaatggctcatttgggtgttg
aaggagtttaacaatgtttgtttagtaacctccctttgcagcgatttatg
gtttctatgtggttttagctgtacgtgaagtcatttcatggggaaagtat
cctgaacaaatgaaactcaggctctggaggtacttaaacatagttttatg
tatattgcactcagatcaaatttcatggctcagtatctaacctaaactct
ccatggtccaaaaataaactgcatttctaaaattagcatcaagcagagca
gttaatgtggagttctgtgaaaaacagcttcataaaccttaaggcctatg
gtgccatgtggggataattgtctcactttatataataaatttattcttat
atataataatgttcaattttaatctgtattaaacatctgtgatggttact
gaatctaggtataaggatggcattagaaaattcatgtccaaattgctttt
cttgatcacccctattaaaaattaagattttggcattaaatatttcatta
tttttactgctattatgttattattatagagttttagttgacatatgaca
tattttaataagatgattcgtggtcatggattgttaaatctacatgtttt
tgtagtatatctcctgagaaatttggatcaacaaataatgttgtatttgt
taagtttctccaaaacgagatatggcatttatcttggttctatactataa
cctaaaagaaaactttcaaaagaaaaaatagaatgataagaaataccaaa
tcatgaggttgtaactatagaaacgaatacattcagaaaattatgagatc
aaagcagtatttgagggaaatggcagagaacatccaagaaatgtgaggag
tttggccttgtagaacaaaagagatggtcagttgtagatgatggcagaca

gaattctcaatttacacaaccaaaggaaaacaagaacaaatattcagaat
ggagcctggctgccctatcgagacgtcacacatctttctgcttgaaaact
taggtcattttacatctgagactcactggctgaatggaaacccaagtctc
acatatgaaagaccctataatacaatgtcaaatttgcatggtcacaattc
tctaaggaacatggtggttatacagaatggaaaatgctcaggcatttttt
tttttaacagcataaagacataaggttactggctgaaaactgctactgtg
gctgcctggtaagagagtatggaaagaggaaaggcattttgtgcaggaag
cagattgaaccctgccatgtaaccaaatgactggtcatccatttctgata
cccaatgatgttattgcagtagaaagacttcagagatggctaaagctcca
ttcctgcttcttactttgagtggtagtaactattatcaccagaactctca
agtgtactcttaagctctatccctgggtcacaaaactgaataaaatacaa
aattgtatctcagaagaagtggcagaaacaaatgatacttgttaggatct
gaatacagggactgtgcctcatgttgactttaattcacctgtctttgctg
tgataataactaaatggaccccagaaaataacaatatactctgaaaataa
atcatgccttcaaattgctgtgcagacctatgacaggctcacaaaagctg
agcaatacagcctcaggaatagattgcagctcactgctttcccatgttgt
gtgctttctaaacttgtcagaaaagagaagcatgttctcatttaatagaa
gaaacaatggtatatattaaggatttcccccaaagctatgctaccattcc
tgtattctgcatataaataattcaaatttctttggaccatctattcagac
ctcctgaaaatacactatcctgctttagcatgacagtattggatagatga
gaaagaaaatttaaacttattatctttgtaacttgaaactctggtcaaat
aatgtgtaaatgtaatctacaaaattcagattccatctcatagtatttgt
tgtgcatgtgcatgttgttgtttcccagatcaggagcaattgcacagcat
tcagagcataagttactattccatacgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82378631_82379685
seq2: B6Ng01-039G19.b_43_1092 (reverse)

seq1  TGTCTGCCATCATCTTCAACTGTGACATCTCTTCTGGTCTACAAGGCCAA  50
      ||||||||||||||| ||||||   |||||||| || |||||||||||||
seq2  TGTCTGCCATCATCTACAACTG-ACCATCTCTTTTGTTCTACAAGGCCAA  49

seq1  ACTCCTCACATTTCTTTGGATGTTCTCTGCCATTTCCCTCAAATACTGCT  100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACTCCTCACATTTC-TTGGATGTTCTCTGCCATTTCCCTCAAATACTGCT  98

seq1  TTGATCTCCTAATTTTCTGAATGTATTCGTTTCTATAGTTACAACCTCAT  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTCATAATTTTCTGAATGTATTCGTTTCTATAGTTACAACCTCAT  148

seq1  GATTTGGTATTTCTTATCATTTCTATTTTTTTCTTTTTGAAAGTTTTCTT  200
      ||||||||||||||||||| |||||||||||   ||||||||||||||||
seq2  GATTTGGTATTTCTTATCA-TTCTATTTTTT--CTTTTGAAAGTTTTCTT  195

seq1  TTAGGTTATAGTATAGAACCAAGATAAATGCCATATCTCGTTTTGGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTATAGTATAGAACCAAGATAAATGCCATATCTCGTTTTGGAGAA  245

seq1  ACTTAACAAATACAACATTATTTGTTGATCCAAATTTCTCAGGAGATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACAAATACAACATTATTTGTTGATCCAAATTTCTCAGGAGATATA  295

seq1  CTACAAAAACATGTAGATTTAACAATCCATGACCACGAATCATCTTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAAACATGTAGATTTAACAATCCATGACCACGAATCATCTTATTA  345

seq1  AAATATGTCATATGTCAACTAAAACTCTATAATAATAACATAATAGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTCATATGTCAACTAAAACTCTATAATAATAACATAATAGCAGT  395

seq1  AAAAATAATGAAATATTTAATGCCAAAATCTTAATTTTTAATAGGGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATGAAATATTTAATGCCAAAATCTTAATTTTTAATAGGGGTGA  445

seq1  TCAAGAAAAGCAATTTGGACATGAATTTTCTAATGCCATCCTTATACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAAAGCAATTTGGACATGAATTTTCTAATGCCATCCTTATACCTA  495

seq1  GATTCAGTAACCATCACAGATGTTTAATACAGATTAAAATTGAACATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGTAACCATCACAGATGTTTAATACAGATTAAAATTGAACATTAT  545

seq1  TATATATAAGAATAAATTTATTATATAAAGTGAGACAATTATCCCCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAAGAATAAATTTATTATATAAAGTGAGACAATTATCCCCACAT  595

seq1  GGCACCATAGGCCTTAAGGTTTATGAAGCTGTTTTTCACAGAACTCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCATAGGCCTTAAGGTTTATGAAGCTGTTTTTCACAGAACTCCACA  645

seq1  TTAACTGCTCTGCTTGATGCTAATTTTAGAAATGCAGTTTATTTTTGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGCTCTGCTTGATGCTAATTTTAGAAATGCAGTTTATTTTTGGAC  695

seq1  CATGGAGAGTTTAGGTTAGATACTGAGCCATGAAATTTGATCTGAGTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGAGTTTAGGTTAGATACTGAGCCATGAAATTTGATCTGAGTGCA  745

seq1  ATATACATAAAACTATGTTTAAGTACCTCCAGAGCCTGAGTTTCATTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATAAAACTATGTTTAAGTACCTCCAGAGCCTGAGTTTCATTTGT  795

seq1  TCAGGATACTTTCCCCATGAAATGACTTCACGTACAGCTAAAACCACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATACTTTCCCCATGAAATGACTTCACGTACAGCTAAAACCACATA  845

seq1  GAAACCATAAATCGCTGCAAAGGGAGGTTACTAAACAAACATTGTTAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCATAAATCGCTGCAAAGGGAGGTTACTAAACAAACATTGTTAAAC  895

seq1  TCCTTCAACACCCAAATGAGCCATTTTTTCTCAGTGATAACCAAATGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAACACCCAAATGAGCCATTTTTTCTCAGTGATAACCAAATGGCA  945

seq1  TCAAATTCTAAACATAGATTTTGACTTTCATTATTTATTAGAACTTAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCTAAACATAGATTTTGACTTTCATTATTTATTAGAACTTAAAA  995

seq1  GTCACTTTAGACAAAAGGCTTTATTTTTATAATGCAGTAAATATAAAATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTTAGACAAAAGGCTTTATTTTTATAATGCAGTAAATATAAAATG  1045

seq1  AATTC  1055
      |||||
seq2  AATTC  1050

seq1: chr9_82240097_82241295
seq2: B6Ng01-039G19.g_66_1245

seq1  GAATTCTCAATTTACACAACCAAAGGAAAACAAGAACAAATATTCAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATTTACACAACCAAAGGAAAACAAGAACAAATATTCAGAAT  50

seq1  GGAGCCTGGCTGCCCTATCGAGACGTCACACATCTTTCTGCTTGAAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGGCTGCCCTATCGAGACGTCACACATCTTTCTGCTTGAAAACT  100

seq1  TAGGTCATTTTACATCTGAGACTCACTGGCTGAATGGAAACCCAAGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCATTTTACATCTGAGACTCACTGGCTGAATGGAAACCCAAGTCTC  150

seq1  ACATATGAAAGACCCTATAATACAATGTCAAATTTGCATGGTCACAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGAAAGACCCTATAATACAATGTCAAATTTGCATGGTCACAATTC  200

seq1  TCTAAGGAACATGGTGGTTATACAGAATGGAAAATGCTCAGGCATTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGAACATGGTGGTTATACAGAATGGAAAATGCTCAGGCATTTTTT  250

seq1  TTTTTAACAGCATAAAGACATAAGGTTACTGGCTGAAAACTGCTACTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACAGCATAAAGACATAAGGTTACTGGCTGAAAACTGCTACTGTG  300

seq1  GCTGCCTGGTAAGAGAGTATGGAAAGAGGAAAGGCATTTTGTGCAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTGGTAAGAGAGTATGGAAAGAGGAAAGGCATTTTGTGCAGGAAG  350

seq1  CAGATTGAACCCTGCCATGTAACCAAATGACTGGTCATCCATTTCTGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGAACCCTGCCATGTAACCAAATGACTGGTCATCCATTTCTGATA  400

seq1  CCCAATGATGTTATTGCAGTAGAAAGACTTCAGAGATGGCTAAAGCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGATGTTATTGCAGTAGAAAGACTTCAGAGATGGCTAAAGCTCCA  450

seq1  TTCCTGCTTCTTACTTTGAGTGGTAGTAACTATTATCACCAGAACTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTTCTTACTTTGAGTGGTAGTAACTATTATCACCAGAACTCTCA  500

seq1  AGTGTACTCTTAAGCTCTATCCCTGGGTCACAAAACTGAATAAAATACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTCTTAAGCTCTATCCCTGGGTCACAAAACTGAATAAAATACAA  550

seq1  AATTGTATCTCAGAAGAAGTGGCAGAAACAAATGATACTTGTTAGGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTATCTCAGAAGAAGTGGCAGAAACAAATGATACTTGTTAGGATCT  600

seq1  GAATACAGGGACTGTGCCTCATGTTGACTTTAATTCACCTGTCTTTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGGGACTGTGCCTCATGTTGACTTTAATTCACCTGTCTTTGCTG  650

seq1  TGATAATAACTAAATGGACCCCAGAAAATAACAATATACTCTGAAAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATAACTAAATGGACCCCAGAAAATAACAATATACTCTGAAAATAA  700

seq1  ATCATGCCTTCAAATTGCTGTGCAGACCTATGACAGGCTCACAAAAGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCCTTCAAATTGCTGTGCAGACCTATGACAGGCTCACAAAAGCTG  750

seq1  AGCAATACAGCCTCAGGAATAGATTGCAGCTCACTGCTTTCCCATGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATACAGCCTCAGGAATAGATTGCAGCTCACTGCTTTCCCATGTTGT  800

seq1  GTGCTTTCTAAACTTGTCAGAAAAGAGAAGCATGTTCTCATTTAATAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTCTAAACTTGTCAGAAAAGAGAAGCATGTTCTCATTTAATAGAA  850

seq1  GAAACAATGGTATATATTAAGGATTTCCCCCCAAAGCTATGCTACCATTC  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAACAATGGTATATATTAAGGATTT-CCCCCAAAGCTATGCTACCATTC  899

seq1  CTGTATTCTGCATATAAATAATTCAAATTTCTTTGGACCATCTATTCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTCTGCATATAAATAATTCAAATTTCTTTGGACCATCTATTCAGA  949

seq1  CCTCCTGAAAAATACACTATCCTGCTTTAAGCATGACAGTATTGGAATAA  1000
      ||||||| |||||||||||||||||||| |||||||||||||||||   |
seq2  CCTCCTG-AAAATACACTATCCTGCTTT-AGCATGACAGTATTGGA--TA  995

seq1  GATGAGAAAAGAAAATTTAAAACTTA-TATC-TTGTAACTTGAAAACTCT  1048
      |||||| ||||||||||| ||||||| |||| |||||||||| |||||||
seq2  GATGAG-AAAGAAAATTT-AAACTTATTATCTTTGTAACTTG-AAACTCT  1042

seq1  GGTCAAATAAATGTGGTAAAATGTAAATTCTACAAAATTCAGATATCCAT  1098
      |||||||| ||||||   ||||||||  |||||||||||||||| |||||
seq2  GGTCAAAT-AATGTG--TAAATGTAA--TCTACAAAATTCAGAT-TCCAT  1086

seq1  CTCATTAGTTATTGTGTGTGCATGTGCATGTGTGTGTTCCCAAGATCAGG  1148
      |||| ||||  |||| |||||||||||||||   |||| || ||||||||
seq2  CTCA-TAGTATTTGT-TGTGCATGTGCATGTTGTTGTTTCCCAGATCAGG  1134

seq1  AGCAAATTGCAACAGCATGTCTCAGAGTAAAGTTTATTATTCCATATGAT  1198
      ||| |||||| |||||||   |||||| | |  ||| ||||||||| |||
seq2  AGC-AATTGC-ACAGCAT---TCAGAGCATAAGTTACTATTCCATACGAT  1179

seq1  A  1199
      |
seq2  A  1180