BAC Information

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BAC

Clone NameB6Ng01-040G01
Chromosome9 (Build37)
Map Location 12,059,499 - 12,179,844
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039989
Downstream geneLOC622505, LOC100039680, LOC665285, LOC100039729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040G01.bB6Ng01-040G01.g
ACCDH867367DH867368
length922969
definitionDH867367|Mus musculus domesticus DNA, BAC clone: B6Ng01-040G01, 5' end.DH867368|Mus musculus domesticus DNA, BAC clone: B6Ng01-040G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,178,921 - 12,179,844)(12,059,499 - 12,060,476)
sequence
gaattcaaagcagtttattataaaattacaaaatagcaaatatttgtgca
gccatgtaaaactaaataacatccttgagatatttccatttccttatgtt
accagggttactttaattctcacttgtattctatcttgtgtttgagtgac
aactcctttccaatttttactgtacaatccttccgtttatgatctcagta
gttaaaattcatgggcttaaattattggcagacaaaatgggcctctcatt
ttacagtcactcagtaatacactgttggtatttaaaaatcttgacaaata
aattgaattttatgtttcaaatttttcctgtttatttactaagtgaaatg
aatataattctagttatcagctaatgtgatgattctgaatctctgtgagg
tatataaatcattgatctagacatgacagtctatacctataacccagcac
ttgtgaggtttgaggtaaagggattccaacctgtagtacaagagttctga
ctccaaaagtatcaacaagacaaagcagaactcaaataaaaactaaaaaa
ttaataggtaattcattcctactttctaaggtccagaattgggataaaat
gatggttacaagagaaaggaatagcagtacatgtttctagacagctattc
aatctttagagaaaactcacataaaatatagaatgctttccttcctgtgg
tataggatgcccatatgatatcttgcttttgttatttataagcttacttt
tatgtcttcacatatctatcaatagcatctaattaatgctcaaatatgaa
ccagttgtaatgataatttaaatattaaatttcaaatcttttttttccat
tttttattaggtatttagctcatttacatttccaatgctctaccaaaagt
ccccataccacctacccccact
gaattcactaacctgctttgcttcactctgatcagtttcagtaggaagtc
ttatcctatctactccagcctttggacccattcctattgtgatcattagc
atcctagtgtttcagatggcccagtttttgtggatcaatactttcctcac
agcagatcatgaaactccttagccgttgtgactccctataaaaccccaag
taataaatttcttaaggctaagtggcccatttcaatttataaccttgcac
agccataaaacaccaacctttgtattccatctctggggaaaaaaacaaaa
acaaacaaacaaaaaaaaaaaaccccaaaaaacagtgataaacaatgttt
agataaattctgttttgttttgttttgtttgagaaaaccaaatgttttac
tatctgtttttctttgctttttttttttttttttttttttttttttggaa
tccatgctttatgctgaattctgtgtcctttggcagtcctgcttgctaaa
tgaacatcccccgggcatgtgatttttactgttataatattgcaatgaag
gcaaaaaaacagctcttttcttttctgttttttattgactgcaaatttta
tacttgcatatgatgtattttgatcaatgaattaccccatttatctccct
gccccagtgcctctcctaatctcacaacctttattacttaccaattttgt
gttttcctttctacttcatttttgtttagacccaaagagtccacttacta
ctggcaggaatcatgggtatgtatatattatctgtgttcctgtggaggat
ttacagggctgacttatctaatactgtgcaattttgtttcaaaaaacctt
agtaaaggaagcctttcaatcttttatctttcatgatgaaaagttcattc
ttttgtacagagaaattggtaactgtcatgtttaagatgtttcgttgccc
acaaacgatgggaattttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_12178921_12179844
seq2: B6Ng01-040G01.b_42_963 (reverse)

seq1  AGTGGGGGTAGGTGGGTATGGGGGACTTTTGGTAGAGCATTGGAAATGTA  50
      ||||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  AGTGGGGGTAGGT-GGTAT-GGGGACTTTTGGTAGAGCATTGGAAATGTA  48

seq1  AATGAGCTAAATACCTAATAAAAAATGG-AAAAAAAGATTTGAAATTTAA  99
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAGATTTGAAATTTAA  98

seq1  TATTTAAATTATCATTACAACTGGTTCATATTTGAGCATTAAATTAGATG  149
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATTTAAATTATCATTACAACTGGTTCATATTTGAGCATT-AATTAGATG  147

seq1  CTATTGATAGATATGTGAAGACATAAAAGTAAGCTTATAAATAACAAAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGATAGATATGTGAAGACATAAAAGTAAGCTTATAAATAACAAAAG  197

seq1  CAAGATATCATATGGGCATCCTATACCACAGGAAGGAAAGCATTCTATAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATCATATGGGCATCCTATACCACAGGAAGGAAAGCATTCTATAT  247

seq1  TTTATGTGAGTTTTCTCTAAAGATTGAATAGCTGTCTAGAAACATGTACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGAGTTTTCTCTAAAGATTGAATAGCTGTCTAGAAACATGTACT  297

seq1  GCTATTCCTTTCTCTTGTAACCATCATTTTATCCCAATTCTGGACCTTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCCTTTCTCTTGTAACCATCATTTTATCCCAATTCTGGACCTTAG  347

seq1  AAAGTAGGAATGAATTACCTATTAATTTTTTAGTTTTTATTTGAGTTCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGGAATGAATTACCTATTAATTTTTTAGTTTTTATTTGAGTTCTG  397

seq1  CTTTGTCTTGTTGATACTTTTGGAGTCAGAACTCTTGTACTACAGGTTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTTGTTGATACTTTTGGAGTCAGAACTCTTGTACTACAGGTTGG  447

seq1  AATCCCTTTACCTCAAACCTCACAAGTGCTGGGTTATAGGTATAGACTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTTTACCTCAAACCTCACAAGTGCTGGGTTATAGGTATAGACTGT  497

seq1  CATGTCTAGATCAATGATTTATATACCTCACAGAGATTCAGAATCATCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTAGATCAATGATTTATATACCTCACAGAGATTCAGAATCATCAC  547

seq1  ATTAGCTGATAACTAGAATTATATTCATTTCACTTAGTAAATAAACAGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTGATAACTAGAATTATATTCATTTCACTTAGTAAATAAACAGGA  597

seq1  AAAATTTGAAACATAAAATTCAATTTATTTGTCAAGATTTTTAAATACCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGAAACATAAAATTCAATTTATTTGTCAAGATTTTTAAATACCA  647

seq1  ACAGTGTATTACTGAGTGACTGTAAAATGAGAGGCCCATTTTGTCTGCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTATTACTGAGTGACTGTAAAATGAGAGGCCCATTTTGTCTGCCA  697

seq1  ATAATTTAAGCCCATGAATTTTAACTACTGAGATCATAAACGGAAGGATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAAGCCCATGAATTTTAACTACTGAGATCATAAACGGAAGGATT  747

seq1  GTACAGTAAAAATTGGAAAGGAGTTGTCACTCAAACACAAGATAGAATAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTAAAAATTGGAAAGGAGTTGTCACTCAAACACAAGATAGAATAC  797

seq1  AAGTGAGAATTAAAGTAACCCTGGTAACATAAGGAAATGGAAATATCTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGAATTAAAGTAACCCTGGTAACATAAGGAAATGGAAATATCTCA  847

seq1  AGGATGTTATTTAGTTTTACATGGCTGCACAAATATTTGCTATTTTGTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTTATTTAGTTTTACATGGCTGCACAAATATTTGCTATTTTGTAA  897

seq1  TTTTATAATAAACTGCTTTGAATTC  924
      |||||||||||||||||||||||||
seq2  TTTTATAATAAACTGCTTTGAATTC  922

seq1: chr9_12059499_12060476
seq2: B6Ng01-040G01.g_68_1036

seq1  GAATTCACTAACCTGCTTTGCTTCACTCTGATCAGTTTCAGTAGGAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAACCTGCTTTGCTTCACTCTGATCAGTTTCAGTAGGAAGTC  50

seq1  TTATCCTATCTACTCCAGCCTTTGGACCCATTCCTATTGTGATCATTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTATCTACTCCAGCCTTTGGACCCATTCCTATTGTGATCATTAGC  100

seq1  ATCCTAGTGTTTCAGATGGCCCAGTTTTTGTGGATCAATACTTTCCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGTGTTTCAGATGGCCCAGTTTTTGTGGATCAATACTTTCCTCAC  150

seq1  AGCAGATCATGAAACTCCTTAGCCGTTGTGACTCCCTATAAAACCCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATCATGAAACTCCTTAGCCGTTGTGACTCCCTATAAAACCCCAAG  200

seq1  TAATAAATTTCTTAAGGCTAAGTGGCCCATTTCAATTTATAACCTTGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATTTCTTAAGGCTAAGTGGCCCATTTCAATTTATAACCTTGCAC  250

seq1  AGCCATAAAACACCAACCTTTGTATTCCATCTCTGGGGAAAAAAACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAAAACACCAACCTTTGTATTCCATCTCTGGGGAAAAAAACAAAA  300

seq1  ACAAACAAACAAAAAAAAAAAACCCCAAAAAACAGTGATAAACAATGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAAAAAAAAAAACCCCAAAAAACAGTGATAAACAATGTTT  350

seq1  AGATAAATTCTGTTTTGTTTTGTTTTGTTTGAGAAAACCAAATGTTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATTCTGTTTTGTTTTGTTTTGTTTGAGAAAACCAAATGTTTTAC  400

seq1  TATCTGTTTTTCTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATCTGTTTTTCTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAA  450

seq1  TCCATGCTTTATGCTGAATTCTGTGTCCTTTGGCAGTCCTGCTTGCTAGA  500
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCATGCTTTATGCTGAATTCTGTGTCCTTTGGCAGTCCTGCTTGCTAAA  500

seq1  TGAGCATCCCCCGTGCATGTGATTTTTACTGTTATAATATTGCAATGAAG  550
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAACATCCCCCGGGCATGTGATTTTTACTGTTATAATATTGCAATGAAG  550

seq1  GCAAAAGAACAGCTCTTTTCTTTTCTGTTTTTTATTGACTGCAAATTTTA  600
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAAACAGCTCTTTTCTTTTCTGTTTTTTATTGACTGCAAATTTTA  600

seq1  TACTTGCATATGATGTATTTTGATCAATGAATTACCCCATTTATCTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCATATGATGTATTTTGATCAATGAATTACCCCATTTATCTCCCT  650

seq1  GCCCCAGTGCCTCTCCTAATCTCACAACCTTTATTACTTACCAATTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGTGCCTCTCCTAATCTCACAACCTTTATTACTTACCAATTTTGT  700

seq1  GTTTTCCTTTCTACTTCATTTTGTTTTAGACCCAAAGAGTCCACTTACTA  750
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  GTTTTCCTTTCTACTTCATTTTTGTTTAGACCCAAAGAGTCCACTTACTA  750

seq1  CTGTCAGTAATTCATGGGTATGTATATATTATCTGTGTTCATGT-GAGGA  799
      ||| ||| || ||||||||||||||||||||||||||||| ||| |||||
seq2  CTGGCAGGAA-TCATGGGTATGTATATATTATCTGTGTTCCTGTGGAGGA  799

seq1  TTTACAGGGCTGACTTAATCTAATACTGTGCAATTTTGTTTCAGAAGACC  849
      |||||||||||||||| |||||||||||||||||||||||||| || |||
seq2  TTTACAGGGCTGACTT-ATCTAATACTGTGCAATTTTGTTTCAAAAAACC  848

seq1  TTAGTAAAGGATG-CTTTCAATTCTTTTATCTTTCATGATGAAAGAGTTC  898
      ||||||||||| | ||||||| |||||||||||||||||||||| |||||
seq2  TTAGTAAAGGAAGCCTTTCAA-TCTTTTATCTTTCATGATGAAA-AGTTC  896

seq1  ATTCTTTGGTAACTGAGAAATATGGTAACTGTCAATGTTTAAAGATGTTT  948
      ||||||| || || ||||||| ||||||||||| |||||| |||||||||
seq2  ATTCTTTTGT-ACAGAGAAAT-TGGTAACTGTC-ATGTTT-AAGATGTTT  942

seq1  TGTTTGCCCACATACTGATGGGAAATTTTG  978
       | ||||||||| || |||||| |||||||
seq2  CG-TTGCCCACAAAC-GATGGG-AATTTTG  969