BAC Information

Click to search

BAC

Clone NameB6Ng01-040L09
Chromosome9 (Build37)3 (Build37)
Map Location 11,714,996 - 11,715,67341,059,330 - 41,059,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665178
Downstream geneLOC100039989, LOC622505, LOC100039680
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040L09.bB6Ng01-040L09.g
ACCDH867591DH867592
length678408
definitionDH867591|Mus musculus domesticus DNA, BAC clone: B6Ng01-040L09, 5' end.DH867592|Mus musculus domesticus DNA, BAC clone: B6Ng01-040L09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,714,996 - 11,715,673)(41,059,330 - 41,059,737)
sequence
gaattcagcttccacttcatttacaaaaggaagtaaataattctttttta
aattttattttattgatttttctttatttacatttcaaatgctatcctga
aagttccctatactctacccccaccctgatcccctacccacccactccca
cttcttggcccgggtgttcccctgtactggggcatataaagtttgcaaga
ccaaggggcctctcttcccaatgatggccaactaggccatcttctgctac
atatgcagctagagacacgagctctgggggtactggttagttcatattgt
tgttccacctataggtttgcagaccccttcagctccttgggtactttctc
tagctcctccattgggggccctgtgttccatcctatagatgactgtgagc
atccacttctgtatttgccaggcactggcatagcctcatatgagacaact
atttcagggtcccttcagcaaaatcttgctggcatatgcaatagtgtctg
ggtttggtggctgattattggatggaagcaaataatttttaaactttgta
caatggcagtatgtgtaagcaagctgtaagtgctacactgtcacagttta
cacatggtgaatgacatattacctgatgtaactaccaattatctgtcctt
ctccctctccctctccctctccctctcc
tttgtttatctctgagccccattttttattgggattatttgattttctgg
agtttactttcttgagttctttatatatattggatattagtcccctatct
gatttaggataagtaaagatcctttcccaatctgttggtggcctttttgt
ctattgaccgtgtcttttgccttacagaagctttgcaattttatgaggtc
ccatttgtcaattctcattcttacagcacaagccatttctgtcctattca
ggaatttttccctggtgttcaaggctttttttcaaggcttttccacactt
tctcctctataagtttcagtgtctttggttttatatggagttccttaatc
cacttagatttgaccttagtacaaggagataagagtggaggacttcacat
tcttctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_11714996_11715673
seq2: B6Ng01-040L09.b_47_724 (reverse)

seq1  GGAGAGGGAGAGGGAGAGGGAGAGGGAGAAGGACAGATAATTGGTAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGAGAGGGAGAGGGAGAGGGAGAAGGACAGATAATTGGTAGTTA  50

seq1  CATCAGGTAATATGTCATTCACCATGTGTAAACTGTGACAGTGTAGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGTAATATGTCATTCACCATGTGTAAACTGTGACAGTGTAGCACT  100

seq1  TACAGCTTGCTTACACATACTGCCATTGTACAAAGTTTAAAAATTATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTGCTTACACATACTGCCATTGTACAAAGTTTAAAAATTATTTG  150

seq1  CTTCCATCCAATAATCAGCCACCAAACCCAGACACTATTGCATATGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCCAATAATCAGCCACCAAACCCAGACACTATTGCATATGCCAG  200

seq1  CAAGATTTTGCTGAAGGGACCCTGAAATAGTTGTCTCATATGAGGCTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTTGCTGAAGGGACCCTGAAATAGTTGTCTCATATGAGGCTATG  250

seq1  CCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCATCTATAGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCATCTATAGGATG  300

seq1  GAACACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGA  350

seq1  AGGGGTCTGCAAACCTATAGGTGGAACAACAATATGAACTAACCAGTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCTGCAAACCTATAGGTGGAACAACAATATGAACTAACCAGTACC  400

seq1  CCCAGAGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTTG  450

seq1  GCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCC  500

seq1  AGTACAGGGGAACACCCGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGGGGAACACCCGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAT  550

seq1  CAGGGTGGGGGTAGAGTATAGGGAACTTTCAGGATAGCATTTGAAATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGGGGGTAGAGTATAGGGAACTTTCAGGATAGCATTTGAAATGTA  600

seq1  AATAAAGAAAAATCAATAAAATAAAATTTAAAAAAGAATTATTTACTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAAAAATCAATAAAATAAAATTTAAAAAAGAATTATTTACTTCC  650

seq1  TTTTGTAAATGAAGTGGAAGCTGAATTC  678
      ||||||||||||||||||||||||||||
seq2  TTTTGTAAATGAAGTGGAAGCTGAATTC  678

seq1: chr3_41059330_41059737
seq2: B6Ng01-040L09.g_66_478 (reverse)

seq1  GTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAA  50
      ||||||||||| ||| |  ||||||| |||||||||||||||||||||||
seq2  GTAGAAGAATGTGAAGTCCTCCACTCTTATCTCCTTGTACTAAGGTCAAA  50

seq1  TCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTAT  100
      ||||||||||| ||||||| ||| ||||||||| ||||||||||||||||
seq2  TCTAAGTGGATTAAGGAACTCCATATAAAACCAAAGACACTGAAACTTAT  100

seq1  AGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA-----TGGTCACAGGGGA  145
      ||||||||||||| |||||||||||||| | |     ||  |||  ||||
seq2  AGAGGAGAAAGTGTGGAAAAGCCTTGAAAAAAAGCCTTGAACACCAGGGA  150

seq1  AAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAG  195
      |||||||||| |||| |||| ||||||||||||||||||| ||||||| |
seq2  AAAATTCCTGAATAGGACAGAAATGGCTTGTGCTGTAAGAATGAGAATTG  200

seq1  ACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACC  245
      |||||||||||||||| ||| ||||||||||||| |||||||||||||| 
seq2  ACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAAGACACG  250

seq1  GTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTA  294
      |||||| ||||||||||| |||||||||||||||||||||||||||| ||
seq2  GTCAAT-AGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACTTA  299

seq1  TCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGA  344
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGA  349

seq1  AGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAG  394
      | ||  | ||||||||||||||||| |||| |||||||||||||||||||
seq2  AAGTAAACTCCAGAAAATCAAATAATCCCAATAAAAAATGGGGCTCAGAG  399

seq1  CTAAACAAAGAATT  408
       |||||||||||||
seq2  ATAAACAAAGAATT  413