BAC Information

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BAC

Clone NameB6Ng01-041M21
Chromosome9 (Build37)
Map Location 3,411,583 - 3,577,932
singlet/doubletdoublet
Overlap geneCwf19l2, LOC384911, Gucy1a2
Upstream gene4930433N12Rik, LOC664797, Olfr369-ps1, Alkbh8
Downstream geneLOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041M21.bB6Ng01-041M21.g
ACCDH868362DH868363
length1,142944
definitionDH868362|Mus musculus domesticus DNA, BAC clone: B6Ng01-041M21, 5' end.DH868363|Mus musculus domesticus DNA, BAC clone: B6Ng01-041M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,576,778 - 3,577,932)(3,411,583 - 3,412,528)
sequence
gaattctacaaaacaagtatctgtgagaaggtcatctgtagaaaatccca
gtgctaagctggttgcctcagaaagagttaatcagttcttgattctaatt
cttcaaagtgaatcttaaaagcatataaataaataaacaagagacctctg
ttaatttttacttcaacccaacccacattagcactatataaaacatgaag
aataaatttggtaatctaccttcaatccttccatacctccattgattaga
aatgtttgctttaaagccagaaccaagtttatgtaataaaataaaactgg
ttacacactgtaatatacaagagtatgtatgtctagttcagagtatcatt
tcattgtagaaatttaaggtagtctttacctagacaatttaaggtagtct
ttacctagacaaagtcaaggcatgaattaatgttagaaaaaatcagactc
tatgtattcaaaattgtgccgactttcccttctctgatggaattttgttt
gtcataacctgtgcagggcctgtgtatgtttccacagtttctgtgaattc
atttgtgtgtctaccctgttgtacttgaaaggcactttttccttggtgtc
atcgatcacctctgagttttacaatttttctgcctcctcttctgcacaga
ttctttcatttatactaagttgaaagataaagaagatatcaaactagtac
agaggtctttactaatcagggaagaatcaaagcagaataaatagaatgta
cctaggaaagaaaaaatactcctgaaccaagaaatcatgaggcattttga
gaaatctaaagagtggagtagaaagggctgcatcagtgctcatgagaaga
tgttctcacaaccaagccccatgagaggtctctggcacagagcctgcaat
taccagaatgatctcatttgtccaaaagaataattatttcctacattaga
aatttttacatcatttaaaggaacatgtttgggaaaagtttgtgctaatt
aaaaagctgatttttgttcttgtggtaaagcaatataatcaccgtggtag
aagtcaggattagttacaacaccattggatgaaaccgttcttgggtacaa
cgcaaaatcttagcttgtaacttatcactggtctttctaaca

gaattccatggggaatactggctatgtagatagttggttccagaaaattg
gatatcatttagtcatcattgttggtggagatgtgatgattataaaattc
tcaggagaactgaaaggtgaatgcctgcactgaaaaactgcatgggaagg
agaagaaaccatttgtaatcaagtggctgaacaattataaggaactgtat
taaaaaataagggaaaagagttttaaaacactggggtctttttcttttgt
atttctgttttcttcgtagaaattaatatctaagtcttcaaagtagaatt
tgtttatttgtttatcttttgggccaaaaagaagacagttttgggtacca
gttctagtctgtggggactcaaaataaatgaaagcatgccatatctttta
tacttattttcaagaagaaaggggctatgtgtagacagcggtagcctaga
aatgtttaggattgattacttctccaaacaaaactgggttcttacagcag
gaaggaagcaagattttgaagccaagcaagataggtttctctgtagcact
ccaaatgtgtggtggatagagactgggaaagggaaaggagcaggaaagat
ggggctcctagagcattacttggttattcagttgtgaaggtcacaattag
atctgatttaagactcctggaggaggaggaggagaaaataacaacaaaaa
ccattctttttagttttatttatttgctttatttgttgttttcaaattct
gtttttttttttttttcattagaaatgtggacactgacaatgcctcttca
gttctccttagttttacatcagcccctttgatttgacttgtaattcctgc
aagtaacttaaattagaatgaaatttggtcgatatgtgcctcagaaatga
gtttgtttagctaggactggagttgggggcttggggttcggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_3576778_3577932
seq2: B6Ng01-041M21.b_44_1185 (reverse)

seq1  TGTTAAGAAAGAACAAGTGAATAAGTTTACCAAGCTAAAGGATTTTTGCT  50
      |||| |||||| || |||| |||||||   ||||||||  ||||||   |
seq2  TGTT-AGAAAG-ACCAGTG-ATAAGTT--ACAAGCTAA--GATTTTGCGT  43

seq1  TGTACCCCAAGAACGATTTCATCCAATGTGTTTGTAAACTAAAATCCTGA  100
      |||| |||||||||| ||||||||||||   |||| ||||  ||||||||
seq2  TGTA-CCCAAGAACGGTTTCATCCAATGGTGTTGT-AACT--AATCCTGA  89

seq1  CTTCTACCAACGGTGGATATAATTGCTTTA-CACAAGAACAAAAATCAGC  149
      |||||||| ||||||  ||| ||||||||| |||||||||||||||||||
seq2  CTTCTACC-ACGGTGATTAT-ATTGCTTTACCACAAGAACAAAAATCAGC  137

seq1  TTTTTAATTAGCACAAACTCTTTCCCAAACATGTTCCTTTAAATGATGTA  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTTTAATTAGCACAAACT-TTTCCCAAACATGTTCCTTTAAATGATGTA  186

seq1  AAAATTTCTAATGTAGGAAATAATTATTCTTTTGGACAAATGAGATCATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCTAATGTAGGAAATAATTATTCTTTTGGACAAATGAGATCATT  236

seq1  CTGGTAATTGCAGGCTCTGTGCCAGAGACCTCTCATGGGGCTTGGTTGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAATTGCAGGCTCTGTGCCAGAGACCTCTCATGGGGCTTGGTTGTG  286

seq1  AGAACATCTTCTCATGAGCACTGATGCAGCCCTTTCTACTCCACTCTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATCTTCTCATGAGCACTGATGCAGCCCTTTCTACTCCACTCTTTA  336

seq1  GATTTCTCAAAATGCCTCATGATTTCTTGGTTCAGGAGTATTTTTTCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCAAAATGCCTCATGATTTCTTGGTTCAGGAGTATTTTTTCTTT  386

seq1  CCTAGGTACATTCTATTTATTCTGCTTTGATTCTTCCCTGATTAGTAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTACATTCTATTTATTCTGCTTTGATTCTTCCCTGATTAGTAAAG  436

seq1  ACCTCTGTACTAGTTTGATATCTTCTTTATCTTTCAACTTAGTATAAATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGTACTAGTTTGATATCTTCTTTATCTTTCAACTTAGTATAAATG  486

seq1  AAAGAATCTGTGCAGAAGAGGAGGCAGAAAAATTGTAAAACTCAGAGGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCTGTGCAGAAGAGGAGGCAGAAAAATTGTAAAACTCAGAGGTG  536

seq1  ATCGATGACACCAAGGAAAAAGTGCCTTTCAAGTACAACAGGGTAGACAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATGACACCAAGGAAAAAGTGCCTTTCAAGTACAACAGGGTAGACAC  586

seq1  ACAAATGAATTCACAGAAACTGTGGAAACATACACAGGCCCTGCACAGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGAATTCACAGAAACTGTGGAAACATACACAGGCCCTGCACAGGT  636

seq1  TATGACAAACAAAATTCCATCAGAGAAGGGAAAGTCGGCACAATTTTGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAAACAAAATTCCATCAGAGAAGGGAAAGTCGGCACAATTTTGAA  686

seq1  TACATAGAGTCTGATTTTTTCTAACATTAATTCATGCCTTGACTTTGTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAGTCTGATTTTTTCTAACATTAATTCATGCCTTGACTTTGTCT  736

seq1  AGGTAAAGACTACCTTAAATTGTCTAGGTAAAGACTACCTTAAATTTCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAGACTACCTTAAATTGTCTAGGTAAAGACTACCTTAAATTTCTA  786

seq1  CAATGAAATGATACTCTGAACTAGACATACATACTCTTGTATATTACAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAATGATACTCTGAACTAGACATACATACTCTTGTATATTACAGT  836

seq1  GTGTAACCAGTTTTATTTTATTACATAAACTTGGTTCTGGCTTTAAAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACCAGTTTTATTTTATTACATAAACTTGGTTCTGGCTTTAAAGCA  886

seq1  AACATTTCTAATCAATGGAGGTATGGAAGGATTGAAGGTAGATTACCAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCTAATCAATGGAGGTATGGAAGGATTGAAGGTAGATTACCAAA  936

seq1  TTTATTCTTCATGTTTTATATAGTGCTAATGTGGGTTGGGTTGAAGTAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTCATGTTTTATATAGTGCTAATGTGGGTTGGGTTGAAGTAAA  986

seq1  AATTAACAGAGGTCTCTTGTTTATTTATTTATATGCTTTTAAGATTCACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACAGAGGTCTCTTGTTTATTTATTTATATGCTTTTAAGATTCACT  1036

seq1  TTGAAGAATTAGAATCAAGAACTGATTAACTCTTTCTGAGGCAACCAGCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAATTAGAATCAAGAACTGATTAACTCTTTCTGAGGCAACCAGCT  1086

seq1  TAGCACTGGGATTTTCTACAGATGACCTTCTCACAGATACTTGTTTTGTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTGGGATTTTCTACAGATGACCTTCTCACAGATACTTGTTTTGTA  1136

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1142


seq1: chr9_3411583_3412528
seq2: B6Ng01-041M21.g_68_1011

seq1  GAATTCCATGGGGAATACTGGCTATGTAGATAGTTGGTTCCAGAAAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGGGAATACTGGCTATGTAGATAGTTGGTTCCAGAAAATTG  50

seq1  GATATCATTTAGTCATCATTGTTGGTGGAGATGTGATGATTATAAAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCATTTAGTCATCATTGTTGGTGGAGATGTGATGATTATAAAATTC  100

seq1  TCAGGAGAACTGAAAGGTGAATGCCTGCACTGAAAAACTGCATGGGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGAACTGAAAGGTGAATGCCTGCACTGAAAAACTGCATGGGAAGG  150

seq1  AGAAGAAACCATTTGTAATCAAGTGGCTGAACAATTATAAGGAACTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAACCATTTGTAATCAAGTGGCTGAACAATTATAAGGAACTGTAT  200

seq1  TAAAAAATAAGGGAAAAGAGTTTTAAAACACTGGGGTCTTTTTCTTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATAAGGGAAAAGAGTTTTAAAACACTGGGGTCTTTTTCTTTTGT  250

seq1  ATTTCTGTTTTCTTCGTAGAAATTAATATCTAAGTCTTCAAAGTAGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTTTTCTTCGTAGAAATTAATATCTAAGTCTTCAAAGTAGAATT  300

seq1  TGTTTATTTGTTTATCTTTTGGGCCAAAAAGAAGACAGTTTTGGGTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTTGTTTATCTTTTGGGCCAAAAAGAAGACAGTTTTGGGTACCA  350

seq1  GTTCTAGTCTGTGGGGACTCAAAATAAATGAAAGCATGCCATATCTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGTCTGTGGGGACTCAAAATAAATGAAAGCATGCCATATCTTTTA  400

seq1  TACTTATTTTCAAGAAGAAAGGGGCTATGTGTAGACAGCGGTAGCCTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTTTCAAGAAGAAAGGGGCTATGTGTAGACAGCGGTAGCCTAGA  450

seq1  AATGTTTAGGATTGATTACTTCTCCAAACAAAACTGGGTTCTTACAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTAGGATTGATTACTTCTCCAAACAAAACTGGGTTCTTACAGCAG  500

seq1  GAAGGAAGCAAGATTTTGAAGCCAAGCAAGATAGGTTTCTCTGTAGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGCAAGATTTTGAAGCCAAGCAAGATAGGTTTCTCTGTAGCACT  550

seq1  CCAAATGTGTGGTGGATAGAGACTGGGAAAGGGAAAGGAGCAGGAAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTGTGGTGGATAGAGACTGGGAAAGGGAAAGGAGCAGGAAAGAT  600

seq1  GGGGCTCCTAGAGCATTACTTGGTTATTCAGTTGTGAAGGTCACAATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCCTAGAGCATTACTTGGTTATTCAGTTGTGAAGGTCACAATTAG  650

seq1  ATCTGATTTAAGACTCCTGGAGGAGGAGGAGGAGAAAATAACAACAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATTTAAGACTCCTGGAGGAGGAGGAGGAGAAAATAACAACAAAAA  700

seq1  CCATTC-TTTTAGTTTTATTTATTTTGCTTTATTTGTTGTTTTCAAATTC  749
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  CCATTCTTTTTAGTTTTATTTA-TTTGCTTTATTTGTTGTTTTCAAATTC  749

seq1  TGTTTTTTTTTTTTTTTCATTAGAAATGTGGACACTGACAATGCCTCTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTTTTTTTTCATTAGAAATGTGGACACTGACAATGCCTCTTC  799

seq1  AGTTCTCCTTAGTTTTACATCAGCCCCTTTGATTTGACTTGTAATTCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCCTTAGTTTTACATCAGCCCCTTTGATTTGACTTGTAATTCCTG  849

seq1  CAGAGTAACTTAATTTGAAATGAAATTTGGTCGATATGTGCCTCAG-AAT  898
      || |||||||||| ||  |||||||||||||||||||||||||||| |||
seq2  CA-AGTAACTTAAATTAGAATGAAATTTGGTCGATATGTGCCTCAGAAAT  898

seq1  GAGTTTGTTATAGCTAGGACTGGAGCTGGGGGCTTGGGGTTCAGGTGG  946
      ||||||||| ||||||||||||||| |||||||||||||||| |||||
seq2  GAGTTTGTT-TAGCTAGGACTGGAGTTGGGGGCTTGGGGTTC-GGTGG  944


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