BAC Information

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BAC

Clone NameB6Ng01-042N19
Chromosome9 (Build37)
Map Location 59,937,584 - 60,110,870
singlet/doubletdoublet
Overlap geneThsd4
Upstream geneEG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389
Downstream geneLOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042N19.bB6Ng01-042N19.g
ACCDH869104DH869105
length6731,242
definitionDH869104|Mus musculus domesticus DNA, BAC clone: B6Ng01-042N19, 5' end.DH869105|Mus musculus domesticus DNA, BAC clone: B6Ng01-042N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,110,198 - 60,110,870)(59,937,584 - 59,938,821)
sequence
gaattcacctctcagcctcaggctcctcatctataaaataggatgagtcg
tcagggtgacatggagtggtcccacactcactgcctcccaagcatgaagc
atgatacaagctccctcaccttgggcaacattttgagtgactcagcaaat
ctctgtacattcaagtgtagagaggtcatccgactacagtggctctaggt
gacacctcgcctcttgtcttcctgagcttcagtctcctactgtgcagaat
gagagggttagggcatggctggattctttccaagtgtgactagacttgga
catgcaggaaggagacagcagcatcggaggagtgactgtggcagagcaag
tttccaggaagtggtggctgagccacatctggaaggtcagatagaacttg
ttttaggcagaaggtaggatgctggatgccagccagataaaagaaaactg
tgcagagcccccaacacagagaaggcgtgtgttgcatttaagccaggatg
gtattggagatgtggctccctaggcatgaaggggaaacatccatggtcga
gctggttgcttgagaagaaagacttagggatcacactgcttgaacctgac
taaaaacaaatgtcattatgggagaaagaaaacatgctgttcatgctctt
caagctgggtgatgggggggggg
gaattccttcagactaaaatctgtgggacatgtgataaagtgcgatttct
accatcaattaggaagactccgaaatcaaacccagctttccggataaccg
atcccagattctggaagtgggaaggacttcgaagcagcctctccaaggtc
aaccacgtcacacctccgacccttactcttgagatggtcagcttcatttc
cagccatgctaataatagccaagggagaatctgaccataacatatcaagg
tcattacggacgcttgagaaatcaagcagcctggtgatgggaggtggcac
aacttcttgtcctgcctgaatgctcaaccacaaagagaaagcatcagcag
tcacagcgaggcaggagctaacacgggagtacgagccacaaagagcacag
gacatatttgtttgctatgtggtactttgttcaccgtaaatgcctcttga
gcttccatcagaatctaaagcatgttttcgtgtgtatttgctgcgtgtgt
gcatgaaaatacaggtttgcacactgcctggctcctggctgctacttaga
agagaaccttggatgttgatctttgcttcccacctcgttggagacaaggt
cttttgtttacagctgcatataccaggctagctggcctgtgagttttggg
ggacgctcctacctctgcctcctacctcaccataggtatgctgggtgatt
ataccacatctagctttgcccagcctctgggggtttgaattcttgtcctc
atgcttgtatatcaagcactttatctatggagtcgtctcctccatcctaa
aggaccttccaagccatcaacagatgtacgactatttttgtaccagtcgt
agtatataaagacaatccctgtatcacagcttacatagcactgaactaac
cagaatgtcagttaacagcacacggacagtgcatgtgtataaaattactg
gggatattggaatttttctgggtttgtacctccatatgctttgcaaacaa
acaaacagacaaccaaccaaaccactaggtacctaaaaataaggtttgca
tgaaaatagctcttctggtctaagaaaaaaaaatacattcctgacagggg
attttctcacgtaattttacctatggatgttatattgaatgcctcaatgt
tcaaggttagaggactataagggttccgaactgggtggagcaattcggtc
tggaatacactcacttcatggagagctctccctggaaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_60110198_60110870
seq2: B6Ng01-042N19.b_48_720 (reverse)

seq1  CCCCCCCCCCATCACCCAGCTTGAAGAGCATGAACAGCATGTTTTCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCATCACCCAGCTTGAAGAGCATGAACAGCATGTTTTCTTTC  50

seq1  TCCCATAATGACATTTGTTTTTAGTCAGGTTCAAGCAGTGTGATCCCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAATGACATTTGTTTTTAGTCAGGTTCAAGCAGTGTGATCCCTAA  100

seq1  GTCTTTCTTCTCAAGCAACCAGCTCGACCATGGATGTTTCCCCTTCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTTCTCAAGCAACCAGCTCGACCATGGATGTTTCCCCTTCATGC  150

seq1  CTAGGGAGCCACATCTCCAATACCATCCTGGCTTAAATGCAACACACGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGAGCCACATCTCCAATACCATCCTGGCTTAAATGCAACACACGCC  200

seq1  TTCTCTGTGTTGGGGGCTCTGCACAGTTTTCTTTTATCTGGCTGGCATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTTGGGGGCTCTGCACAGTTTTCTTTTATCTGGCTGGCATCC  250

seq1  AGCATCCTACCTTCTGCCTAAAACAAGTTCTATCTGACCTTCCAGATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCTACCTTCTGCCTAAAACAAGTTCTATCTGACCTTCCAGATGTG  300

seq1  GCTCAGCCACCACTTCCTGGAAACTTGCTCTGCCACAGTCACTCCTCCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCCACCACTTCCTGGAAACTTGCTCTGCCACAGTCACTCCTCCGA  350

seq1  TGCTGCTGTCTCCTTCCTGCATGTCCAAGTCTAGTCACACTTGGAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGTCTCCTTCCTGCATGTCCAAGTCTAGTCACACTTGGAAAGAA  400

seq1  TCCAGCCATGCCCTAACCCTCTCATTCTGCACAGTAGGAGACTGAAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCATGCCCTAACCCTCTCATTCTGCACAGTAGGAGACTGAAGCTC  450

seq1  AGGAAGACAAGAGGCGAGGTGTCACCTAGAGCCACTGTAGTCGGATGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACAAGAGGCGAGGTGTCACCTAGAGCCACTGTAGTCGGATGACC  500

seq1  TCTCTACACTTGAATGTACAGAGATTTGCTGAGTCACTCAAAATGTTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACACTTGAATGTACAGAGATTTGCTGAGTCACTCAAAATGTTGCC  550

seq1  CAAGGTGAGGGAGCTTGTATCATGCTTCATGCTTGGGAGGCAGTGAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGAGGGAGCTTGTATCATGCTTCATGCTTGGGAGGCAGTGAGTGT  600

seq1  GGGACCACTCCATGTCACCCTGACGACTCATCCTATTTTATAGATGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCACTCCATGTCACCCTGACGACTCATCCTATTTTATAGATGAGGA  650

seq1  GCCTGAGGCTGAGAGGTGAATTC  673
      |||||||||||||||||||||||
seq2  GCCTGAGGCTGAGAGGTGAATTC  673

seq1: chr9_59937584_59938821
seq2: B6Ng01-042N19.g_70_1311

seq1  GAATTCCTTCAGACTAAAATCTGTGGGACATGTGATAAAGTGCGATTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGACTAAAATCTGTGGGACATGTGATAAAGTGCGATTTCT  50

seq1  ACCATCAATTAGGAAGACTCCGAAATCAAACCCAGCTTTCCGGATAACCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAATTAGGAAGACTCCGAAATCAAACCCAGCTTTCCGGATAACCG  100

seq1  ATCCCAGATTCTGGAAGTGGGAAGGACTTCGAAGCAGCCTCTCCAAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGATTCTGGAAGTGGGAAGGACTTCGAAGCAGCCTCTCCAAGGTC  150

seq1  AACCACGTCACACCTCCGACCCTTACTCTTGAGATGGTCAGCTTCATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACGTCACACCTCCGACCCTTACTCTTGAGATGGTCAGCTTCATTTC  200

seq1  CAGCCATGCTAATAATAGCCAAGGGAGAATCTGACCATAACATATCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGCTAATAATAGCCAAGGGAGAATCTGACCATAACATATCAAGG  250

seq1  TCATTACGGACGCTTGAGAAATCAAGCAGCCTGGTGATGGGAGGTGGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACGGACGCTTGAGAAATCAAGCAGCCTGGTGATGGGAGGTGGCAC  300

seq1  AACTTCTTGTCCTGCCTGAATGCTCAACCACAAAGAGAAAGCATCAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTGTCCTGCCTGAATGCTCAACCACAAAGAGAAAGCATCAGCAG  350

seq1  TCACAGCGAGGCAGGAGCTAACACGGGAGTACGAGCCACAAAGAGCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCGAGGCAGGAGCTAACACGGGAGTACGAGCCACAAAGAGCACAG  400

seq1  GACATATTTGTTTGCTATGTGGTACTTTGTTCACCGTAAATGCCTCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATTTGTTTGCTATGTGGTACTTTGTTCACCGTAAATGCCTCTTGA  450

seq1  GCTTCCATCAGAATCTAAAGCATGTTTTCGTGTGTATTTGCTGCGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCATCAGAATCTAAAGCATGTTTTCGTGTGTATTTGCTGCGTGTGT  500

seq1  GCATGAAAATACAGGTTTGCACACTGCCTGGCTCCTGGCTGCTACTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAAATACAGGTTTGCACACTGCCTGGCTCCTGGCTGCTACTTAGA  550

seq1  AGAGAACCTTGGATGTTGATCTTTGCTTCCCACCTCGTTGGAGACAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACCTTGGATGTTGATCTTTGCTTCCCACCTCGTTGGAGACAAGGT  600

seq1  CTTTTGTTTACAGCTGCATATACCAGGCTAGCTGGCCTGTGAGTTTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTTACAGCTGCATATACCAGGCTAGCTGGCCTGTGAGTTTTGGG  650

seq1  GGACGCTCCTACCTCTGCCTCCTACCTCACCATAGGTATGCTGGGTGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCTCCTACCTCTGCCTCCTACCTCACCATAGGTATGCTGGGTGATT  700

seq1  ATACCACATCTAGCTTTGCCCAGCCTCTGGGGGTTTGAATTCTTGTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACATCTAGCTTTGCCCAGCCTCTGGGGGTTTGAATTCTTGTCCTC  750

seq1  ATGCTTGTATATCAAGCACTTTATCTATGGAGTCGTCTCCTCCATCCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGTATATCAAGCACTTTATCTATGGAGTCGTCTCCTCCATCCTAA  800

seq1  AGGACCTTCCAAGCCATCAACAGATGTACGACTATTTTTGTACCAGTCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTTCCAAGCCATCAACAGATGTACGACTATTTTTGTACCAGTCGT  850

seq1  AGTATATAAAGACAATCCCTGTATCACAGCTTACATAGCACTGAACTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATAAAGACAATCCCTGTATCACAGCTTACATAGCACTGAACTAAC  900

seq1  CAGAATGTCAGTTAACAGCACACGGACAGTGCATGTGTATAAAATTACT-  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGAATGTCAGTTAACAGCACACGGACAGTGCATGTGTATAAAATTACTG  950

seq1  GGGATATTGGAA-TTTTCTGGTTTTGTACCTCCATATGCTTTGCAAACAA  998
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  GGGATATTGGAATTTTTCTGGGTTTGTACCTCCATATGCTTTGCAAACAA  1000

seq1  ACAAACAGACAAACAAACAAACCACTAAGTACCT-AAAATAAAGTTTGCA  1047
      |||||||||||| ||| |||||||||| |||||| ||||||| |||||||
seq2  ACAAACAGACAACCAACCAAACCACTAGGTACCTAAAAATAAGGTTTGCA  1050

seq1  TG-ACATAGCTCTTCTGGTCTAAGAAAAAAAAAATACA-TCCTGACAGTG  1095
      || | ||||||||||||||||||| ||||||||||||| ||||||||| |
seq2  TGAAAATAGCTCTTCTGGTCTAAG-AAAAAAAAATACATTCCTGACAGGG  1099

seq1  --ATTTCTACAGTATTTTTTACTTAT-GATGTTTTATTG-ATGCTTCAAA  1141
         |||||   |||  |||||| ||| |||||| ||||| |||| || ||
seq2  GATTTTCTCACGTA-ATTTTACCTATGGATGTTATATTGAATGCCTC-AA  1147

seq1  TGTTCACAGTTTAGAG--CATTAAGGGTTTCGAACATTTGGGTTTGGCCA  1189
      |||||| || ||||||  |  |||||||| |||||   |||| | |  ||
seq2  TGTTCA-AGGTTAGAGGACTATAAGGGTTCCGAAC---TGGG-TGGAGCA  1192

seq1  TTTCTGTCTGGATTAACAACTACTT-AT-GAAAGTTCTCCCTGGAATGGG  1237
       ||| ||||||| | |||   |||| || || || ||||||||||| |||
seq2  ATTCGGTCTGGAAT-ACACTCACTTCATGGAGAGCTCTCCCTGGAAAGGG  1241

seq1  A  1238
      |
seq2  A  1242