BAC Information

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BAC

Clone NameB6Ng01-045C14
Chromosome9 (Build37)
Map Location 46,257,046 - 46,377,576
singlet/doubletdoublet
Overlap genenone
Upstream geneDscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722
Downstream geneEG667890, 2900052N01Rik, D930036J05, Cadm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045C14.bB6Ng01-045C14.g
ACCDH870700DH870701
length1,035943
definitionDH870700|Mus musculus domesticus DNA, BAC clone: B6Ng01-045C14, 5' end.DH870701|Mus musculus domesticus DNA, BAC clone: B6Ng01-045C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,376,520 - 46,377,576)(46,257,046 - 46,258,043)
sequence
gaattcctaagagagtggaaggcaacacaggaagccagagagaggaaagg
ggccaccctcactcttaatacagcaacttgatcttactaaaactaattca
gtcctcaagagcagcacataggcccttccaatggcagtagcctatgattt
aatttccttgaattatttcttactttgactttttctgttttagacaggat
ctcactatgtgagacaggctagcttcaaactcacagcaatcctcccattg
ctgccttctgagtgttgagattacaaatatgtgccaccacacccagccta
ggtcttactctttaaatctccatcacacactgttatactggggatcaagc
ttctaccatataaagcaaagaacaagactgtagccagccaggcatggtag
cgcattcttataatcctgtcacttggagaaagctgaggcagaaggatcct
aagttcaagaccaggctggactctatagtgacctcaactgcaaaaggcaa
aaacaggaggcttagtggtttggaacacttgctgctcttgtagacttctg
tccccagcaactacagggtggctcataaccatccatgactccactatcag
gagctctgacaccctcttctgacttcctagggaactaggcatttgcatgg
tgttgtcaaaccactcatatacataaataactgttttaaatgatgctaaa
gtaaatataattgctttatatttactttaaatataaatttacttaaacta
taattcagcaattaatgtttcattattatttattttacttaaacatgatc
tacatatatatttcatgaatacccgttagttaatgtaagtgagcaaaact
ccatgatctagtttgtaagaacatggagaacttttgcccatgtttacaat
taacagaaatttttctgtgtctttgcagcactagcatctctcagctattt
ctgtactggtttacagtttgtgggttagctcaccaagcaggactcagact
ttaacatgctttttgggtgtgtgtggggggtatgc
gaattcatgacaaataaatatggtcctgctcacacacaggctcgggaagg
ggaagggcagtagggcactaacttgcagatctcaaaggtgggtctggatc
ttgtgaccaaagaactaaatagatgtgcaaggttctaaattgatagccag
agcaccaacatgttggtagtcagggtgaggctcattaattaacctttgtg
ttgaattatacgagctctaagggagagacccaagaaaggtgtttagtagt
ccttgggcaggcagagtctagccaagtcttcctggtcctagacaggctca
aagtctctactgtagatactcacatgagtgacagagtggggatgatggat
gtactgcattacttaaaagagagtttgctgctaaggaaattttactcaga
gccaggtatggtggcatgtgtgccctagaatttgggaggctgaagcagaa
gcagcatatgttcaaggccagccagagttgtggggagaccctgtatcagt
cagtcaatcaatcaatcaatcaatcaatcaatcaatcaacttcagtctat
tttagtacagtgcataaggtaagatgtgtagagatagaagatatcagtat
gcgatatctacttgcatcccagtggatcccagagtcatttcctcctttta
atctaggctgggcattgcctctcactttctgagagtcgccatccccaccc
ctagccccaccatgtcaactgacgctgcccaattgcctatcttccttatc
cagttcaacacttttctagctcagaaattgtttggtgatattgggaacaa
tgaggcctgacactgttagttcagagaaaaatggcctgctttctttcttc
tttcttctttctttctttctttcttctttcttcttctttcttcttctttc
ttcttcttcatctctctctctctcatctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_46376520_46377576
seq2: B6Ng01-045C14.b_45_1079 (reverse)

seq1  GCATACCCCCCCACACACACACACAGAGCATGTTAAAAGTCTGAGTCCTT  50
      ||||| |||||||||||||| || | |||||||| ||||||||||||| |
seq2  GCATA-CCCCCCACACACACCCAAAAAGCATGTT-AAAGTCTGAGTCC-T  47

seq1  GCTTTGGTGAAGGCTAACCCACAAACTGTAAAACCAGTTACAAGGAAAAT  100
      || |||||||  ||||||||||||||||| ||||||| ||||    ||||
seq2  GC-TTGGTGA--GCTAACCCACAAACTGT-AAACCAG-TACA---GAAAT  89

seq1  AGCTTGAGAGGATGCCTAGTGCTGCCAAAGACCACAGAAAAATTTCTTGG  150
      ||| ||||| |||| ||||||||| |||||| |||||||||||||||  |
seq2  AGC-TGAGA-GATG-CTAGTGCTG-CAAAGA-CACAGAAAAATTTCT--G  132

seq1  TTAATTGTTAAAACATGGGCAAAAGTTCTCCATGTTTCTTTACAAACTAG  200
      ||||||||  ||||||||||||||||||||||||||   |||||||||||
seq2  TTAATTGT--AAACATGGGCAAAAGTTCTCCATGTT--CTTACAAACTAG  178

seq1  ATCATGGAGTTTTGCTCACTTACATTAACTAACGGGTATTCATGAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGAGTTTTGCTCACTTACATTAACTAACGGGTATTCATGAAATAT  228

seq1  ATATGTAGATCATGTTTAAGTAAAATAAATAATAATGAAACATTAATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAGATCATGTTTAAGTAAAATAAATAATAATGAAACATTAATTGC  278

seq1  TGAATTATAGTTTAAGTAAATTTATATTTAAAGTAAATATAAAGCAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATAGTTTAAGTAAATTTATATTTAAAGTAAATATAAAGCAATTA  328

seq1  TATTTACTTTAGCATCATTTAAAACAGTTATTTATGTATATGAGTGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTTTAGCATCATTTAAAACAGTTATTTATGTATATGAGTGGTTT  378

seq1  GACAACACCATGCAAATGCCTAGTTCCCTAGGAAGTCAGAAGAGGGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACACCATGCAAATGCCTAGTTCCCTAGGAAGTCAGAAGAGGGTGTC  428

seq1  AGAGCTCCTGATAGTGGAGTCATGGATGGTTATGAGCCACCCTGTAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCCTGATAGTGGAGTCATGGATGGTTATGAGCCACCCTGTAGTTG  478

seq1  CTGGGGACAGAAGTCTACAAGAGCAGCAAGTGTTCCAAACCACTAAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACAGAAGTCTACAAGAGCAGCAAGTGTTCCAAACCACTAAGCCT  528

seq1  CCTGTTTTTGCCTTTTGCAGTTGAGGTCACTATAGAGTCCAGCCTGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTTGCCTTTTGCAGTTGAGGTCACTATAGAGTCCAGCCTGGTCT  578

seq1  TGAACTTAGGATCCTTCTGCCTCAGCTTTCTCCAAGTGACAGGATTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTAGGATCCTTCTGCCTCAGCTTTCTCCAAGTGACAGGATTATAA  628

seq1  GAATGCGCTACCATGCCTGGCTGGCTACAGTCTTGTTCTTTGCTTTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCGCTACCATGCCTGGCTGGCTACAGTCTTGTTCTTTGCTTTATAT  678

seq1  GGTAGAAGCTTGATCCCCAGTATAACAGTGTGTGATGGAGATTTAAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAGCTTGATCCCCAGTATAACAGTGTGTGATGGAGATTTAAAGAG  728

seq1  TAAGACCTAGGCTGGGTGTGGTGGCACATATTTGTAATCTCAACACTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCTAGGCTGGGTGTGGTGGCACATATTTGTAATCTCAACACTCAG  778

seq1  AAGGCAGCAATGGGAGGATTGCTGTGAGTTTGAAGCTAGCCTGTCTCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCAATGGGAGGATTGCTGTGAGTTTGAAGCTAGCCTGTCTCACA  828

seq1  TAGTGAGATCCTGTCTAAAACAGAAAAAGTCAAAGTAAGAAATAATTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGATCCTGTCTAAAACAGAAAAAGTCAAAGTAAGAAATAATTCAA  878

seq1  GGAAATTAAATCATAGGCTACTGCCATTGGAAGGGCCTATGTGCTGCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTAAATCATAGGCTACTGCCATTGGAAGGGCCTATGTGCTGCTCT  928

seq1  TGAGGACTGAATTAGTTTTAGTAAGATCAAGTTGCTGTATTAAGAGTGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACTGAATTAGTTTTAGTAAGATCAAGTTGCTGTATTAAGAGTGAG  978

seq1  GGTGGCCCCTTTCCTCTCTCTGGCTTCCTGTGTTGCCTTCCACTCTCTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCCCTTTCCTCTCTCTGGCTTCCTGTGTTGCCTTCCACTCTCTTA  1028

seq1  GGAATTC  1057
      |||||||
seq2  GGAATTC  1035

seq1: chr9_46257046_46258043
seq2: B6Ng01-045C14.g_69_1011

seq1  GAATTCATGACAAATAAATATGGTCCTGCTCACACACAGGCTCGGGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACAAATAAATATGGTCCTGCTCACACACAGGCTCGGGAAGG  50

seq1  GGAAGGGCAGTAGGGCACTAACTTGCAGATCTCAAAGGTGGGTCTGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCAGTAGGGCACTAACTTGCAGATCTCAAAGGTGGGTCTGGATC  100

seq1  TTGTGACCAAAGAACTAAATAGATGTGCAAGGTTCTAAATTGATAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACCAAAGAACTAAATAGATGTGCAAGGTTCTAAATTGATAGCCAG  150

seq1  AGCACCAACATGTTGGTAGTCAGGGTGAGGCTCATTAATTAACCTTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAACATGTTGGTAGTCAGGGTGAGGCTCATTAATTAACCTTTGTG  200

seq1  TTGAATTATACGAGCTCTAAGGGAGAGACCCAAGAAAGGTGTTTAGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTATACGAGCTCTAAGGGAGAGACCCAAGAAAGGTGTTTAGTAGT  250

seq1  CCTTGGGCAGGCAGAGTCTAGCCAAGTCTTCCTGGTCCTAGACAGGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGCAGGCAGAGTCTAGCCAAGTCTTCCTGGTCCTAGACAGGCTCA  300

seq1  AAGTCTCTACTGTAGATACTCACATGAGTGACAGAGTGGGGATGATGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTACTGTAGATACTCACATGAGTGACAGAGTGGGGATGATGGAT  350

seq1  GTACTGCATTACTTAAAAGAGAGTTTGCTGCTAAGGAAATTTTACTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCATTACTTAAAAGAGAGTTTGCTGCTAAGGAAATTTTACTCAGA  400

seq1  GCCAGGTATGGTGGCATGTGTGCCCTAGAATTTGGGAGGCTGAAGCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTATGGTGGCATGTGTGCCCTAGAATTTGGGAGGCTGAAGCAGAA  450

seq1  GCAGCATATGTTCAAGGCCAGCCAGAGTTGTGGGGAGACCCTGTATCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATATGTTCAAGGCCAGCCAGAGTTGTGGGGAGACCCTGTATCAGT  500

seq1  CAGTCAATCAATCAATCAATCAATCAATCAATCAATCAACTTCAGTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAATCAATCAATCAATCAATCAATCAATCAATCAACTTCAGTCTAT  550

seq1  TTTAGTACAGTGCATAAGGTAAGATGTGTAGAGATAGAAGATATCAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTACAGTGCATAAGGTAAGATGTGTAGAGATAGAAGATATCAGTAT  600

seq1  GCGATATCTACTTGCATCCCAGTGGATCCCAGAGTCATTTCCTCCTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATATCTACTTGCATCCCAGTGGATCCCAGAGTCATTTCCTCCTTTTA  650

seq1  ATCTAGGCTGGGCATTGCCTCTCACTTTCTGAGAGTCGCCATCCCCACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGCTGGGCATTGCCTCTCACTTTCTGAGAGTCGCCATCCCCACCC  700

seq1  CTAGCCCCACCATGTCAACTGACGCTGCCCAATTGCCTATCTTCCTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCCACCATGTCAACTGACGCTGCCCAATTGCCTATCTTCCTTATC  750

seq1  CAGTTCAACACTTTTCTAGCTCAGAAATTGTTTGGTGATATTGGGAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAACACTTTTCTAGCTCAGAAATTGTTTGGTGATATTGGGAACAA  800

seq1  TGAGGCCTGACACTGTTAGTTCAGAGAAAAATGGCCTGCTTTCTTTCTTT  850
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  TGAGGCCTGACACTGTTAGTTCAGAGAAAAATGGCCTGCTTTCTTTC---  847

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  900
                                                    ||||
seq2  ----------------------------------------------TTCT  851

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  950
      ||| |||||||||||||||||||||||  ||||||||||  |||||||||
seq2  TTC-TTCTTTCTTTCTTTCTTTCTTCT--TTCTTCTTCT--TTCTTCTTC  896

seq1  TTCTTCTTCTTCTTCTTCTCTCTCTCTCTC-TCTCTCTCTCTCTCTCTC  998
      |  |||||||||||| |||||||||||||| ||||||||||||||||||
seq2  T--TTCTTCTTCTTCATCTCTCTCTCTCTCATCTCTCTCTCTCTCTCTC  943