BAC Information

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BAC

Clone NameB6Ng01-045E04
Chromosome9 (Build37)
Map Location 108,079,452 - 108,219,589
singlet/doubletdoublet
Overlap geneBsn, Dag1, Nicn1, EG434437, Tcta, Rhoa
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, LOC100042108
Downstream geneGpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045E04.bB6Ng01-045E04.g
ACCDH870770DH870771
length205762
definitionDH870770|Mus musculus domesticus DNA, BAC clone: B6Ng01-045E04, 5' end.DH870771|Mus musculus domesticus DNA, BAC clone: B6Ng01-045E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,219,384 - 108,219,589)(108,079,452 - 108,080,213)
sequence
gaattctaaaacccaaaactggtaactactttttgccaaaacaataaagc
atccactttttttttttaaagcaaagatgtgcaaagatgtggcttagggt
tacacctgtatttcaagggcatccctcagctcccaactgagatcaggcca
tttatttatctattaatttatttattttggtttttcgaaacagggtttct
ctgtg
gaattctatccagcttgcaaatgtctgagtgagaacatttttttttaaag
aactgttatttgaagccactgaattttggctgatttattgcacagtaata
tggtgaaatcagataagtactcaaaaccaatccttacaaattaaaaacaa
tctagaataaaggagcttaactttttatcttattaatggcataaccacac
aggaaagactaacttctaatagctcaagacatgagcctatatgtctctgg
aaagatataacctaaagaccaaatataccccaggggatcttaacttatat
tcactagtattattgctagggaaaaaaatagctacattattactttaaaa
taaccatacacgggatccatcccataatcagcctccaaacactgacacca
ttgcatacactagcaagattttgctgaaaggaccctgatgtagctgtttc
ttgtgagactacgccggggcctagcaaacacataagtggatgctcacagt
cagctattagatggatcacagggcccccaatggaggagctagagaaagta
tccaaggagctaaagggaactgcaaccatataggtggaacaacattatga
actaaccagtaccccggagctcttgactctagctacatatgtatcaaaaa
atggcctagttggccatcactggaaagagaggtccattggacttgcaaac
tttatatgccccagtacaggggaacaccagggccaaaaagtgggagtgag
ggggaggggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108219384_108219589
seq2: B6Ng01-045E04.b_39_244 (reverse)

seq1  CACAGAGAAACCCTGTTTCGAAAAACCAAAATAAATAAATTAATAGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAACCCTGTTTCGAAAAACCAAAATAAATAAATTAATAGATAA  50

seq1  ATAAATGGCCTGATCTCAGTTGGGAGCTGAGGGATGCCCTTGAAATACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGCCTGATCTCAGTTGGGAGCTGAGGGATGCCCTTGAAATACAG  100

seq1  GTGTAACCCTAAGCCACATCTTTGCACATCTTTGCTTTAAAAAAAAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACCCTAAGCCACATCTTTGCACATCTTTGCTTTAAAAAAAAAAAG  150

seq1  TGGATGCTTTATTGTTTTGGCAAAAAGTAGTTACCAGTTTTGGGTTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTTTATTGTTTTGGCAAAAAGTAGTTACCAGTTTTGGGTTTTAG  200

seq1  AATTCC  206
      ||||||
seq2  AATTCC  206

seq1: chr9_108079452_108080213
seq2: B6Ng01-045E04.g_67_828

seq1  GAATTCTATCCAGCTTGCAAATGTCTGAGTGAGAACATTTTTTTTTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCAGCTTGCAAATGTCTGAGTGAGAACATTTTTTTTTAAAG  50

seq1  AACTGTTATTTGAAGCCACTGAATTTTGGCTGATTTATTGCACAGTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTATTTGAAGCCACTGAATTTTGGCTGATTTATTGCACAGTAATA  100

seq1  TGGTGAAATCAGATAAGTACTCAAAACCAATCCTTACAAATTAAAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAATCAGATAAGTACTCAAAACCAATCCTTACAAATTAAAAACAA  150

seq1  TCTAGAATAAAGGAGCTTAACTTTTTATCTTATTAATGGCATAACCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATAAAGGAGCTTAACTTTTTATCTTATTAATGGCATAACCACAC  200

seq1  AGGAAAGACTAACTTCTAATAGCTCAAGACATGAGCCTATATGTCTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGACTAACTTCTAATAGCTCAAGACATGAGCCTATATGTCTCTGG  250

seq1  AAAGATATAACCTAAAGACCAAATATACCCCAGGGGATCTTAACTTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATAACCTAAAGACCAAATATACCCCAGGGGATCTTAACTTATAT  300

seq1  TCACTAGTATTATTGCTAGGGAAAAAAATAGCTACATTATTACTTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGTATTATTGCTAGGGAAAAAAATAGCTACATTATTACTTTAAAA  350

seq1  TAACCATACACGGGATCCATCCCATAATCAGCCTCCAAACACTGACACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATACACGGGATCCATCCCATAATCAGCCTCCAAACACTGACACCA  400

seq1  TTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGATGTAGCTGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGATGTAGCTGTTTC  450

seq1  TTGTGAGACTACGCCGGGGCCTAGCAAACACATAAGTGGATGCTCACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGACTACGCCGGGGCCTAGCAAACACATAAGTGGATGCTCACAGT  500

seq1  CAGCTATTAGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTAGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTA  550

seq1  TCCAAGGAGCTAAAGGGAACTGCAACCATATAGGTGGAACAACATTATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGAGCTAAAGGGAACTGCAACCATATAGGTGGAACAACATTATGA  600

seq1  ACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTACATATGTATCAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTACATATGTATCAAAAA  650

seq1  ATGGCCTAGTTGGCCATCACTGGAAAGAGAGGTCCATTGGACTTGCAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTAGTTGGCCATCACTGGAAAGAGAGGTCCATTGGACTTGCAAAC  700

seq1  TTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGTGGGAGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGTGGGAGTGAG  750

seq1  GGGGAGGGGAGT  762
      ||||||||||||
seq2  GGGGAGGGGAGT  762