BAC Information

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BAC

Clone NameB6Ng01-046H05
Chromosome9 (Build37)12 (Build37)
Map Location 4,735,436 - 4,736,58889,173,057 - 89,173,660
singlet/doubletsingletsinglet
Overlap geneGria4
Upstream geneGucy1a2, LOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik
Downstream geneEG664889, Casp1, Casp4, Casp12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046H05.bB6Ng01-046H05.g
ACCDH871612DH871613
length1,147934
definitionDH871612|Mus musculus domesticus DNA, BAC clone: B6Ng01-046H05, 5' end.DH871613|Mus musculus domesticus DNA, BAC clone: B6Ng01-046H05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,735,436 - 4,736,588)(89,173,057 - 89,173,660)
sequence
gaattctttctttggtttgtcatcagtgcctcagacaaagtggacagact
ttttttttaattggattttttatatttacatttccaatgttaattccttt
cctggttttccctctacaaacctcctatcccatccctccattaccctgct
tctataagtgtgctccccctacctgcctcactgccctaccattcctcctc
tacactggggcatcaagccttcacaggaccaagggcttcccctcccagtg
atgccagataaggtcctttcagctccttcagtgcttcccctaactcctcc
attggggtccttgtcttcagttctatggttggctgggatcatctgcatct
gtatttgtcaggatctggcagagcctctcaggagacagctgtatcaggct
cctgtcagcaagtacttcttggcatcagcaatagtgtctgggttgggttc
ctgcatgtgggatggacccccaggtgggaacagacatttcttaatgtctc
tcttcctgaaacacttgacatagaactcttgacataaaaaagcacggcta
tagatgcagagaagaggcagtgaacggctcacagaaagtggataacattc
tccagaacacgggtggttgatgtgtgtctagtacattaagattaaagatg
taaggatgatttaggtagcattttctgttgcaacaacattaaagagcaca
gatcctcatttcattaaatataatgcgctttttttaaaaaaaagatcata
gagatggttataacaacattaaagtaaattaaattgttgaattagagaaa
ttagctatccaatctgatgtcacataagacaattcaatttggttataata
gtgcatgtgaacatactaaaattaaactattaaatggatgttgctataga
ctaaataagatattgtagttttatatcagcataagaaatagcattggaaa
tgatttaatttccaattatagtcacatttagatgaatttattagtcattt
atagcatcccaggagagttggattgtggaaatgacaataagcttggggct
agatgacgaatatatatataaatattctactttattattaatatttatgc
acagatcataaggtatttagtttagcatgatatttatatggcaatac
gaattcagtcctaagaataaaactcacagccctgagtgtctcaaaatgaa
acatgagagagaatacactagcagcctaaaagcacacgtagaagctctag
aactaaaggaagcaaattcaaccaagagaagtagacagcaggaaataaaa
aaaaaaaaaaccaaactcataaatgaaaaaggagacataacagaaactga
ggaaatccaaaacaccatcaaatcctactaaaaaggctatactcaacaaa
gctggaaaacctggatgaaatggacaatttcctagatggatactgaagaa
taaaattttttactgaactcttcttcaccccagaacctgacccctcccat
ctagagattgttcccggaacactcctgaactcttcaccccagaatgcatt
cctgaactcctcaccctagagttcgaaccctcccaactaaaaactgttcc
aagaacatttttgagataagggcctcctggaacaacctcaaaatgaaccg
ggtacattgccaaatgataggacatgaccccttagttacgtagattccct
tggcagaaccccttgtcccttggcagaaccccctagtgatgtaaacttgt
actttccctgcccagctctccccccttgagttttactatataagcttgtg
aaaaatttggctggtcgtcgagtctcctctacaccactaggtgcatgagt
ttcgaccccagagctctggtctatgttccatgtgctttcttgctgttgtt
ctattaaatcttgccttctacattttgagtacggtctcagtgtcttcttg
ggtccgcggctgtcccggggcttgagtgcttgagtgagggtctccctttc
gggggtctttcattttggtgcattggctgggaatcagcgcgaccacccag
aaggtcctagactcactttagaagtaagattctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_4735436_4736588
seq2: B6Ng01-046H05.b_54_1192

seq1  TCTTTGGTTTGTCATCAGTGCCTCAGACAAAGTGGACAGACTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTTTGTCATCAGTGCCTCAGACAAAGTGGACAGACTTTTTTTTT  50

seq1  AATTGGATTTTTTATATTTACATTTCCAATGTTAATTCCTTTCCTGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATTTTTTATATTTACATTTCCAATGTTAATTCCTTTCCTGGTTT  100

seq1  TCCCTCTACAAACCTCCTATCCCATCCCTCCATTACCCTGCTTCTATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTACAAACCTCCTATCCCATCCCTCCATTACCCTGCTTCTATAAG  150

seq1  TGTGCTCCCCCTACCTGCCTCACTGCCCTACCATTCCTCCTCTACACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCCCCTACCTGCCTCACTGCCCTACCATTCCTCCTCTACACTGG  200

seq1  GGCATCAAGCCTTCACAGGACCAAGGGCTTCCCCTCCCAGTGATGCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAAGCCTTCACAGGACCAAGGGCTTCCCCTCCCAGTGATGCCAGA  250

seq1  TAAGGTCCTTTCAGCTCCTTCAGTGCTTCCCCTAACTCCTCCATTGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCCTTTCAGCTCCTTCAGTGCTTCCCCTAACTCCTCCATTGGGGT  300

seq1  CCTTGTCTTCAGTTCTATGGTTGGCTGGGATCATCTGCATCTGTATTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTTCAGTTCTATGGTTGGCTGGGATCATCTGCATCTGTATTTGT  350

seq1  CAGGATCTGGCAGAGCCTCTCAGGAGACAGCTGTATCAGGCTCCTGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCTGGCAGAGCCTCTCAGGAGACAGCTGTATCAGGCTCCTGTCAG  400

seq1  CAAGTACTTCTTGGCATCAGCAATAGTGTCTGGGTTGGGTTCCTGCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACTTCTTGGCATCAGCAATAGTGTCTGGGTTGGGTTCCTGCATGT  450

seq1  GGGATGGACCCCCAGGTGGGAACAGACATTTCTTAATGTCTCTCTTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGACCCCCAGGTGGGAACAGACATTTCTTAATGTCTCTCTTCCTG  500

seq1  AAACACTTGACATAGAACTCTTGACATAAAAAAGCACGGCTATAGATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTGACATAGAACTCTTGACATAAAAAAGCACGGCTATAGATGCA  550

seq1  GAGAAGAGGCAGTGAACGGCTCACAGAAAGTGGATAACATTCTCCAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGGCAGTGAACGGCTCACAGAAAGTGGATAACATTCTCCAGAAC  600

seq1  ACGGGTGGTTGATGTGTGTCTAGTACATTAAGATTAAAGATGTAAGGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGTGGTTGATGTGTGTCTAGTACATTAAGATTAAAGATGTAAGGATG  650

seq1  ATTTAGGTAGCATTTTCTGTTGCAACAACATTAAAGAGCACAGATCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTAGCATTTTCTGTTGCAACAACATTAAAGAGCACAGATCCTCA  700

seq1  TTTCATTAAATATAATGCGCTTTTTTTAAAAAAAAGATCATAGAGATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTAAATATAATGCGCTTTTTTTAAAAAAAAGATCATAGAGATGGT  750

seq1  TATAACAACATTAAAGTAAATTAAATTGTTGAATTAGAGAAATTAGCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAACATTAAAGTAAATTAAATTGTTGAATTAGAGAAATTAGCTAT  800

seq1  CCAATCTGATGTCACATAAGACAATTCAATTTGGTTATAATAGTGCATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTGATGTCACATAAGACAATTCAATTTGGTTATAATAGTGCATGT  850

seq1  GAACATACTAAAATTAAACTATTAAATGGATGTTGCTATAGACTAAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATACTAAAATTAAACTATTAAATGGATGTTGCTATAGACTAAATAA  900

seq1  GATATTTGTAGTTTTATATCAGCATAAGAAATAAGCATTGGAAATGATTT  950
      |||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  GATA-TTGTAGTTTTATATCAGCATAAGAAAT-AGCATTGGAAATGATTT  948

seq1  AATTTCCAATTATAGTCACATTTAGATGAATTTATTAGTCATTTATAGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATTTCCAATTATAGTCACATTTAGATGAATTTATTAGTCATTTATAGC-  997

seq1  ATCCCAGGAGAAGTTGGATTGTGGAAATGACAATAAGCTTGGGGCTAGAT  1050
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGAG-AGTTGGATTGTGGAAATGACAATAAGCTTGGGGCTAGAT  1046

seq1  GACAGATATATATATATATATATATATACATATATATATATATATATATG  1100
      |||  ||||||||||| ||||   | ||| | ||| |||  |||| ||||
seq2  GACGAATATATATATAAATAT---TCTAC-TTTAT-TATTAATATTTATG  1091

seq1  CAACAAAATCATAAGTAATTTAGTTTTAAGCATGATATTATTATTGGCAA  1150
      ||   | ||||||||  |||||||||  |||||||||||  || ||||||
seq2  CA--CAGATCATAAGGTATTTAGTTT--AGCATGATATTTATA-TGGCAA  1136

seq1  TAC  1153
      |||
seq2  TAC  1139

seq1: chr12_89173057_89173660
seq2: B6Ng01-046H05.g_361_965

seq1  TGAAGAATAAAAATTTTTACTGAACTCTTCTTCACCCCAGAACCCGACCC  50
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  TGAAGAATAAAATTTTTTACTGAACTCTTCTTCACCCCAGAACCTGACCC  50

seq1  CTCCCATCTAGAGATTGTTCCCGGAACACTCCTGAACTCTTCACCCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCTAGAGATTGTTCCCGGAACACTCCTGAACTCTTCACCCCAGA  100

seq1  ATGCATTCCTGAACTCCTCACCCTAGAGTTCGAACCCTCCCAACTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTCCTGAACTCCTCACCCTAGAGTTCGAACCCTCCCAACTAAAAA  150

seq1  CTGTTCCAAGAACATTTTTGAGATAAGGGCCTCCTGGAACAACCTCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCAAGAACATTTTTGAGATAAGGGCCTCCTGGAACAACCTCAAAA  200

seq1  TGAACCGGGTACATTGCCAAATGATAGGACATGACCCCTTAGTTACGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCGGGTACATTGCCAAATGATAGGACATGACCCCTTAGTTACGTAG  250

seq1  ATTCCCTTGGCAGAACCCCTTGTCCCTTGGCAGAACCCCCTAGTGATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTTGGCAGAACCCCTTGTCCCTTGGCAGAACCCCCTAGTGATGTA  300

seq1  AACTTGTACTTTCCCTGCCCAGCTCTCCCCCCTTGAGTTTTACTATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTACTTTCCCTGCCCAGCTCTCCCCCCTTGAGTTTTACTATATAA  350

seq1  GCCTGTGAAAAATTTGGCTGGTCGTCGATTCTCCTCTACACCACTAGGTG  400
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCTTGTGAAAAATTTGGCTGGTCGTCGAGTCTCCTCTACACCACTAGGTG  400

seq1  CATGAGTTTCGACCCCAGAGCTCTGGTCTATGTTCCATGTGCTTTCTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTTCGACCCCAGAGCTCTGGTCTATGTTCCATGTGCTTTCTTGC  450

seq1  TGTTGTTCTATTAAATCTTGCCTTCTACATTTTGAGTACGGTCTCAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCTATTAAATCTTGCCTTCTACATTTTGAGTACGGTCTCAGTGT  500

seq1  CTTCTTGGGTCCGCGGCTGTCCCGGGGCTTGAGTGCTTGAGTGAGGGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGGGTCCGCGGCTGTCCCGGGGCTTGAGTGCTTGAGTGAGGGTCT  550

seq1  CCC-TTCGGGGGTCTTTCATTTTGGTGCATGGGCCGGGAATCAGCGCGAC  599
      ||| |||||||||||||||||||||||||| ||| |||||||||||||||
seq2  CCCTTTCGGGGGTCTTTCATTTTGGTGCATTGGCTGGGAATCAGCGCGAC  600

seq1  CACCC  604
      |||||
seq2  CACCC  605