BAC Information

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BAC

Clone NameB6Ng01-048J06
Chromosome9 (Build37)
Map Location 95,530,825 - 95,632,135
singlet/doubletdoublet
Overlap genePcolce2, Trpc1
Upstream geneSlc9a9, Chst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9
Downstream geneAI427122, 1700065D16Rik, Xrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048J06.bB6Ng01-048J06.g
ACCDH873095DH873096
length5941,020
definitionDH873095|Mus musculus domesticus DNA, BAC clone: B6Ng01-048J06, 5' end.DH873096|Mus musculus domesticus DNA, BAC clone: B6Ng01-048J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,530,825 - 95,531,421)(95,631,102 - 95,632,135)
sequence
tgggaaggcaaacagcatcttgccagtccagttacagctgccatttccat
gtgctgtgagcattttgtgtcctgatagaggtcataatgggttagcttac
agtatttattaaaagcctgatttttaaattagcccaggttcaaataccag
tttttcgtttatgtgaatgagtggctaactgctttgaatgtcagaatcac
tgcctgtaaaataacagtaaacatctttacctcacagacttgaaaagaga
aggcaagttcgtcatattatactatattttgtcaggtttggttgttatct
cttagaagcctgttcttttctaatgggaggcagaaagggagtggatctgg
aggggagagaaggcagggaggaactgagagaagtagaggaaggggaatat
gtaatcgtaaaaataaaaacatgagctaagacggaaggaaagaccatcca
gagactgccccacccagggatccatcccataaacaactaccaaacccaga
cactattgcatatgccagatagattttgcttgacgtgacccttgattaag
ctgtctcttgtgagtctatgccaatgcctgggcaaatacagaag
gaattcatcttgagggctttaggctaatcttaaagtcgtgatcctctgcc
tttctgtttcttgaatacatggattgtaggcatgtaccattattcttgga
agaacacagcttaattgagaaatgtgcaaagactgttggctgctgctttc
tcctcccaggtgtttgtagcctgagacagctgcctacagagatctcctac
tgagaatggctagtccctcccctgtgctgtacatattaaatgtgctgaga
ggttccagaggtagcaaaacccaccctgaccccagcttcactgtgtatgt
gcctgtgtgagtgtagtctgtcttttcttcattcccttctcatgctttgt
cagggttccaagacccaagttcaaaggtcctgctatatttgtttgccacc
atttgtgtgctgggaaccgaacccaggtcctctgctgaggaatgagcact
tttaactactgagccatctttccagcccacaaaacttctcactaagtatt
tgaactcttcttgcctcttatttcccttcttagaccatatttatatttct
atctttactacttatcatctcttcccatttcgccagttgaaatgttaaca
tcaagaaaggacctgccttctttaggttcaacaaaatcactccatgggca
gtgttattagaggtgtggctgtcagttggttgagaagtcagcttttcagc
aaaagccctttctgtgctttgtatgtggtttttgatacccattgtagcag
cattgagagatataggcagtctttagacatggtagcacacatctataacc
ccatttcctagaatggtaaggcagaagaagggtcataaattttgaggcca
gcagagggtatttagaaattaccctgccttaagtatattataaaatgtta
tccaaagatgttttcatcctaatgaggcagttcattcatttcctgtctgt
aaagtagactgtaaaatgcagtgatattagaaattgttagtataatatat
acaaaaatgtgatattcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_95530825_95531421
seq2: B6Ng01-048J06.b_44_643

seq1  GAATTCTGGGAAGGCAAACAGCATCTTGCCAGTCCAGTTACAGCTGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAAGGCAAACAGCATCTTGCCAGTCCAGTTACAGCTGCCAT  50

seq1  TTCCATGTGCTGTGAGCATTTTGTGTCCTGATAGAGGTCATAATGGGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTGCTGTGAGCATTTTGTGTCCTGATAGAGGTCATAATGGGTTA  100

seq1  GCTTACAGTATTTATTAAAAGCCTGATTTTTAAATTAGCCCAGGTTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAGTATTTATTAAAAGCCTGATTTTTAAATTAGCCCAGGTTCAAA  150

seq1  TACCAGTTTTTCGTTTATGTGAATGAGTGGCTAACTGCTTTGAATGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTTTTTCGTTTATGTGAATGAGTGGCTAACTGCTTTGAATGTCAG  200

seq1  AATCACTGCCTGTAAAATAACAGTAAACATCTTTACCTCACAGACTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTGCCTGTAAAATAACAGTAAACATCTTTACCTCACAGACTTGAA  250

seq1  AAGAGAAGGCAAGTTCGTCATATTATACTATATTTTGTCAGGTTTGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGCAAGTTCGTCATATTATACTATATTTTGTCAGGTTTGGTTG  300

seq1  TTATCTCTTAGAAGCCTGTTCTTTTCTAATGGGAGGCAGAAAGGGAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTTAGAAGCCTGTTCTTTTCTAATGGGAGGCAGAAAGGGAGTGG  350

seq1  ATCTGGAGGGGAGAGAAGGCAGGGAGGAACTGAGAGAAGTAGAGGAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAGGGGAGAGAAGGCAGGGAGGAACTGAGAGAAGTAGAGGAAGGG  400

seq1  GAATATGTAATCATAAAAATAAAAACATGAGCTAAGACGGAAGGAAAGAC  450
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATATGTAATCGTAAAAATAAAAACATGAGCTAAGACGGAAGGAAAGAC  450

seq1  CATCCAGAGACTGCCCCACCCAGGGATCCATCCCATAAACAACTACCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGAGACTGCCCCACCCAGGGATCCATCCCATAAACAACTACCAAA  500

seq1  CCCAGACACTATTGCATATGCCAGAAAGATTTTGC-TGACAGGACCC-TG  548
      ||||||||||||||||||||||||| ||||||||| ||||  ||||| ||
seq2  CCCAGACACTATTGCATATGCCAGATAGATTTTGCTTGACGTGACCCTTG  550

seq1  ATATAGCTGTCTCTTGTGAGTCTATGCCAATGCCT-GGCAAATACAGAAG  597
      ||  ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTAAGCTGTCTCTTGTGAGTCTATGCCAATGCCTGGGCAAATACAGAAG  600

seq1: chr9_95631102_95632135
seq2: B6Ng01-048J06.g_68_1087 (reverse)

seq1  CCTGAATATCACATTTTTTGGTAATTAATATTTATTA-CCTAAACATTTC  49
      ||||||||||||||||||          ||| |||||  ||||  |||||
seq2  CCTGAATATCACATTTTT---------GTATATATTATACTAACAATTTC  41

seq1  TAAAATATCACTGCATTTTTAACAGTTCTACTTTACAGACAAGGAAATGA  99
      |  ||||||||||||||||  |||| |||||||||||||| |||||||||
seq2  T--AATATCACTGCATTTT--ACAG-TCTACTTTACAGAC-AGGAAATGA  85

seq1  ATGAACCTGCCTCATTAGGATGAAAACATCTTTGGATAACA-TGTATAAT  148
      ||||| ||||||||||||||||||||||||||||||||||| | ||||||
seq2  ATGAA-CTGCCTCATTAGGATGAAAACATCTTTGGATAACATTTTATAAT  134

seq1  AATACTTAAGGCAGGGTAATTTTCTAAATACCCTCTGCTGGCCTC-AAAT  197
       |||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  -ATACTTAAGGCAGGGTAA-TTTCTAAATACCCTCTGCTGGCCTCAAAAT  182

seq1  TTATGACCCTTCTTCTGCCTTACCATTCTAGGAAATGGGGTTATAGATGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACCCTTCTTCTGCCTTACCATTCTAGGAAATGGGGTTATAGATGT  232

seq1  GTGCTACCATGTCT-AAGACTGCCTATATCTCTCAATGCTGCTACAATGG  296
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGCTACCATGTCTAAAGACTGCCTATATCTCTCAATGCTGCTACAATGG  282

seq1  GTATCAAAAACCACATACAAAGCACAGAAAGGGCTTTTGCTGAAAAGCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAAAACCACATACAAAGCACAGAAAGGGCTTTTGCTGAAAAGCTG  332

seq1  ACTTCTCAACCAACTGACAGCCACACCTCTAATAACACTGCCCATGGAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCAACCAACTGACAGCCACACCTCTAATAACACTGCCCATGGAGT  382

seq1  GATTTTGTTGAACCTAAAGAAGGCAGGTCCTTTCTTGATGTTAACATTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTTGAACCTAAAGAAGGCAGGTCCTTTCTTGATGTTAACATTTC  432

seq1  AACTGGCGAAATGGGAAGAGATGATAAGTAGTAAAGATAGAAATATAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCGAAATGGGAAGAGATGATAAGTAGTAAAGATAGAAATATAAAT  482

seq1  ATGGTCTAAGAAGGGAAATAAGAGGCAAGAAGAGTTCAAATACTTAGTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTAAGAAGGGAAATAAGAGGCAAGAAGAGTTCAAATACTTAGTGA  532

seq1  GAAGTTTTGTGGGCTGGAAAGATGGCTCAGTAGTTAAAAGTGCTCATTCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTTGTGGGCTGGAAAGATGGCTCAGTAGTTAAAAGTGCTCATTCC  582

seq1  TCAGCAGAGGACCTGGGTTCGGTTCCCAGCACACAAATGGTGGCAAACAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGAGGACCTGGGTTCGGTTCCCAGCACACAAATGGTGGCAAACAA  632

seq1  ATATAGCAGGACCTTTGAACTTGGGTCTTGGAACCCTGACAAAGCATGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCAGGACCTTTGAACTTGGGTCTTGGAACCCTGACAAAGCATGAG  682

seq1  AAGGGAATGAAGAAAAGACAGACTACACTCACACAGGCACATACACAGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAATGAAGAAAAGACAGACTACACTCACACAGGCACATACACAGTG  732

seq1  AAGCTGGGGTCAGGGTGGGTTTTGCTACCTCTGGAACCTCTCAGCACATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGGGTCAGGGTGGGTTTTGCTACCTCTGGAACCTCTCAGCACATT  782

seq1  TAATATGTACAGCACAGGGGAGGGACTAGCCATTCTCAGTAGGAGATCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGTACAGCACAGGGGAGGGACTAGCCATTCTCAGTAGGAGATCTC  832

seq1  TGTAGGCAGCTGTCTCAGGCTACAAACACCTGGGAGGAGAAAGCAGCAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCAGCTGTCTCAGGCTACAAACACCTGGGAGGAGAAAGCAGCAGC  882

seq1  CAACAGTCTTTGCACATTTCTCAATTAAGCTGTGTTCTTCCAAGAATAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTCTTTGCACATTTCTCAATTAAGCTGTGTTCTTCCAAGAATAAT  932

seq1  GGTACATGCCTACAATCCATGTATTCAAGAAACAGAAAGGCAGAGGATCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATGCCTACAATCCATGTATTCAAGAAACAGAAAGGCAGAGGATCA  982

seq1  CGACTTTAAGATTAGCCTAAAGCCCTCAAGATGAATTC  1034
      ||||||||||||||||||||||||||||||||||||||
seq2  CGACTTTAAGATTAGCCTAAAGCCCTCAAGATGAATTC  1020