BAC Information

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BAC

Clone NameB6Ng01-049B05
Chromosome9 (Build37)
Map Location 16,054,778 - 16,220,137
singlet/doubletdoublet
Overlap geneFat3
Upstream gene2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b
Downstream geneEG434373, LOC100040074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049B05.bB6Ng01-049B05.g
ACCDH873442DH873443
length887145
definitionDH873442|Mus musculus domesticus DNA, BAC clone: B6Ng01-049B05, 5' end.DH873443|Mus musculus domesticus DNA, BAC clone: B6Ng01-049B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,219,252 - 16,220,137)(16,054,778 - 16,054,922)
sequence
gaattccaatatgaatggaaccataggtaaatggaatcttagctaaaaga
actaactgagaaatatatagatcttaaggttgtgcttttcaaccttactc
ccctaaaacaactggacatgaatagcagtagatacttattttagagaaaa
atgtgggcttggatttcaaaactatttaatgacactcttgggttcctaca
actggaaaccagttgagcatttattttgtttaaaagactccacattattt
tttgcaggagctggtgacttacaggggctatttggtaaggagtagggtgt
tttgctggagccagagttctctttaatgacattgtctcctaaggctgtgc
tgctcagtgtgtgatctgtgttactctatttatgaagccatcccatgagt
cataaatgaagaatatatatatatatatatatatatatatatatatatat
atatatagataaatagacagtttaagtcagcttattttatttttttttat
agagaaataaataaatttatatttcaatcaacatgtgggaactgcttttc
ttcaaaaggacatattgattggatcacttaagcaacacagtgatgggaga
aaattatactggggtttctccatgttgaatcaactttgagcagacctaag
aaacatctagatccaaaatctgagaggttacacataaaagagaaatgttt
tattatttttttgattctgataaaatgttctgatcaggattcctaaagtg
caatagcttctagggttttcaaggctgttctcctcatgaccccaacaatg
tcactagctttcttttcattagatggacccgtgtttcctgttagttacaa
tctaaccaagatttcaaatctataatcccttcatgga
tatgtttagctctgttcaccatttttaatagggttatttggttctctggc
gtctaccttcttgagttgattcttttcatcttaaaaatataatgactgct
tttacttagatatgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_16219252_16220137
seq2: B6Ng01-049B05.b_46_931 (reverse)

seq1  CCATGAAGGAATGTTGGCTTTGAAATCTTGGGTAGATTGTAACATACAGG  50
      ||||||||| ||  | | ||||||||||||| |||||||||||  |||||
seq2  CCATGAAGGGATTATAGATTTGAAATCTTGGTTAGATTGTAACTAACAGG  50

seq1  AAAACACGGGTCCATCTAATGTAAAG-AAGCTAGTGACAATGTTGGGGTT  99
       |||||||||||||||||||| |||| |||||||||||| |||||||| |
seq2  -AAACACGGGTCCATCTAATGAAAAGAAAGCTAGTGACATTGTTGGGG-T  98

seq1  CATGAGGAGAACAGACTTGAAAA-CCTAGAAGCTATTGCACTCTAGGAAT  148
      |||||||||||||| |||||||| |||||||||||||||||| |||||||
seq2  CATGAGGAGAACAGCCTTGAAAACCCTAGAAGCTATTGCACTTTAGGAAT  148

seq1  CCTGATCAGAACATTTTAATCAGGATCAAAAAAATAATAAAACATTTCTC  198
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  CCTGATCAGAACATTTT-ATCAGAATCAAAAAAATAATAAAACATTTCTC  197

seq1  TTTTATGTGTAACCTCTCAGATTTTGGATCTAGATGATTTCTTAGGTCTG  248
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTTATGTGTAACCTCTCAGATTTTGGATCTAGATG-TTTCTTAGGTCTG  246

seq1  CTCAAAGTTGATTCAACATGGAGAAA-CCCAGTATAATTTTCTCCCATCA  297
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCAAAGTTGATTCAACATGGAGAAACCCCAGTATAATTTTCTCCCATCA  296

seq1  CTGTGTTGCTTAAGTGATCCAATCAATATGTCCTTTTGAAG-AAAGCAGT  346
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGTGTTGCTTAAGTGATCCAATCAATATGTCCTTTTGAAGAAAAGCAGT  346

seq1  TCCCACATGTTGATTGAAATATAAATTTATTTATTTCTCTATAAAAAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATGTTGATTGAAATATAAATTTATTTATTTCTCTATAAAAAAAA  396

seq1  ATAAAATAAGCTGACTTAAACTGTCTATTTAACTATATATATATATATAT  446
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATAAAATAAGCTGACTTAAACTGTCTATTTATCTATATATATATATATAT  446

seq1  ATATATATATATATATATATATATATATTCTTCATTTATGACTCATGGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATTCTTCATTTATGACTCATGGGA  496

seq1  TGGCTTCATAAATAGAGTAACACAGATCACACACTGAGCAGCACAGCCTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCATAAATAGAGTAACACAGATCACACACTGAGCAGCACAGCCTT  546

seq1  AGGAGACAATGTCATTAAAGAGAACTCTGGCTCCAGCAAAACACCCTACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACAATGTCATTAAAGAGAACTCTGGCTCCAGCAAAACACCCTACT  596

seq1  CCTTACCAAATAGCCCCTGTAAGTCACCAGCTCCTGCAAAAAATAATGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCAAATAGCCCCTGTAAGTCACCAGCTCCTGCAAAAAATAATGTG  646

seq1  GAGTCTTTTAAACAAAATAAATGCTCAACTGGTTTCCAGTTGTAGGAACC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTTTAAACAAAATAAATGCTCAACTGGTTTCCAGTTGTAGGAACC  696

seq1  CAAGAGTGTCATTAAATAGTTTTGAAATCCAAGCCCACATTTTTCTCTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTGTCATTAAATAGTTTTGAAATCCAAGCCCACATTTTTCTCTAA  746

seq1  AATAAGTATCTACTGCTATTCATGTCCAGTTGTTTTAGGGGAGTAAGGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTATCTACTGCTATTCATGTCCAGTTGTTTTAGGGGAGTAAGGTT  796

seq1  GAAAAGCACAACCTTAAGATCTATATATTTCTCAGTTAGTTCTTTTAGCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCACAACCTTAAGATCTATATATTTCTCAGTTAGTTCTTTTAGCT  846

seq1  AAGATTCCATTTACCTATGGTTCCATTCATATTGGAATTC  886
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCCATTTACCTATGGTTCCATTCATATTGGAATTC  886

seq1: chr9_16054778_16054922
seq2: B6Ng01-049B05.g_74_218

seq1  TATGTTTAGCTCTGTTCACCATTTTTAATAGGGTTATTTGGTTCTCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTAGCTCTGTTCACCATTTTTAATAGGGTTATTTGGTTCTCTGGC  50

seq1  GTCTACCTTCTTGAGTTGATTCTTTTCATCTTAAAAATATAATGACTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCTTCTTGAGTTGATTCTTTTCATCTTAAAAATATAATGACTGCT  100

seq1  TTTACTTAGATATGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGT  145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTAGATATGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGT  145