BAC Information

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BAC

Clone NameB6Ng01-049F13
Chromosome9 (Build37)
Map Location 19,745,973 - 19,747,108
singlet/doubletsinglet
Overlap geneOlfr863-ps1
Upstream geneOlfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823
Downstream geneOlfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049F13.bB6Ng01-049F13.g
ACCDH873638DH873639
length1,1951,104
definitionDH873638|Mus musculus domesticus DNA, BAC clone: B6Ng01-049F13, 5' end.DH873639|Mus musculus domesticus DNA, BAC clone: B6Ng01-049F13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttcccacagagttgaaacaaggcagtcctctgctacatatgta
gcagggtccacagaccagcccatgtaggctttttggctggcagcttagcc
tctgggaggtatatggtttccaagttaattgataatgttattcttcctat
ggtgttgtaatccccttcagctccttcagtccatcacctaactcttccat
aggggttcccaacatcagtccaaatattggctgtaagtatctgaatctgt
ctcagtcagttgctgatagagcccctcagaggacagtcataataggctcc
tgtctttaagcacaacatggcatcagtaatagtgttggtgcttggtgttt
ggtgcctgtacatgggatggattataatgtgtgccagtctctgattgtcc
ttttcttcaattatgactctatttttgttcctgtatttcctttagccaag
aacaattctgggtcaagaattttgaatatgtttgggttgcccatgcttca
aatgggatccatgtctacctactgatggcctctttaggttccatctacct
actgttgggcattttggctgaggtcatctccactgggtcctgggaggctg
aatggcttgtgccacaaacttttggcataaagtaggtctattagctatgc
cctgtgagataactgtccattgatatctcttcataggttccttaaaattt
atagaaggaacactaaaagcaaatctttcacaaccctttcgatgttaagg
aatagtaaagaaacaatctttcagatctatcacaattttataatatcctt
taggaatagttactggggagcgaagcccaggttgtaaaggtcccataggt
accatagtctcaattaattttcttaaatcttgtagcaatttcatttaaca
gatttcttgataatgaaattggtgtaatccaagggactgaagattctact
agatgtcctgctctagttgctctgcactagcaagaagtgcttcatttttc
tttagttaggaccctgatccaccccacggatttcattaagccatgaactt
atcatgtgggagcagcaagatatggaacctaccgaaatactccacctctg
tgtagaggaggtaggatctcaaggtctaattttgcctcttttagctgacg
actaagcccgtttgagtgtgctataccacctttaactgcaccaat
gaattcaccatcttcagtgcagcaagtaactaccaaatagaagcaaagac
cctagactatgaactgttttctaaataaataatttaagtaaaaaacttaa
cacttctcatatatgaatgatttcttaagaattgctagatcacagaaata
caggcatgtagtcagttgcctatagagtgcttaattcactccaaactttt
cttttttcaaaagatttccaagctgtatggagtcatataatttaacaaga
actttggaattccttctccttggactctcagaagaccctgaactacaacc
tgtcttatttgtactattcctgctcatatacctgctcactgtgcttggaa
atgtgctcatcatcttggccatcagctctgattcccgcctccacagccct
atgtactttttcctcttcaacctttcattgtctgacatgggcttcagcag
caccaccatgcccaaaatgctggtaaacatgcagactcataagaaatcca
taactcattctgaatgcctaactcaggtgtctttcttctttctttttggc
gatatgggcggcctattactgactgtgatggcctatgaccgatgggtggc
catttgtcaccctctgcactaccaagtcattctgaacccttgtctgtgta
gatgtttggtcatagcttcatttttcattagtcttgtgagttcacaaata
cactgcttgatggtgtcacaactaacattttgcactaatatggaaatccc
tcatttcttctggatgttacagagcttctaaaacttgcctgttctgacac
ctctatcaacaatatagttaggtttcttttaagcatcattcttggtttcc
tccctgtctcaggaatattttattcctactataaaataactcctccattt
taaagttcatcactgttaggaaatataaagcctctctactgtgctctcac
tctcagttgtttgctattttatggaacagtatagtgtgtacttagtcaca
gtctagtctcagaaagtgtggtgggctcagtatgatacatgtgtcctatg
atgaaccttattcagctaggaacaggacatcaagaagcctcaatgtcaca
aaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_19745973_19747108
seq2: B6Ng01-049F13.g_66_1169 (reverse)

seq1  ATTTTGTGA---AGGGCTTTCTTGATGTCCCTGTTCCTCAGGCTGTAGAT  47
      |||||||||    | |  |||||||||| |||||||||   ||||   ||
seq2  ATTTTGTGACATTGAGGCTTCTTGATGT-CCTGTTCCT--AGCTG--AAT  45

seq1  AAAGGGGTTCATCATGGGAACCACCATTGTATACATTACTGAGGCCACCA  97
      ||   |||||||||| |||  ||    ||||| || ||||||| ||||||
seq2  AA---GGTTCATCATAGGACACA----TGTAT-CA-TACTGAGCCCACCA  86

seq1  CACTTTTCCTGGAAGAACTAGAAACTGTTGAACTAAGGTACACACCTATA  147
      ||||||  |||  || |||||  |||||   ||||| ||||||| |||||
seq2  CACTTT--CTG--AG-ACTAG--ACTGT--GACTAA-GTACACA-CTATA  125

seq1  CCTGTTCCATAAAATAAGCAAACAACTGAGAGGTGAGAGCCACAGGTAGA  197
       |||||||||||||| ||||||||||||||| ||||||| |||| |||||
seq2  -CTGTTCCATAAAAT-AGCAAACAACTGAGA-GTGAGAG-CACA-GTAGA  170

seq1  GAAGGCTTTATATTTTCCTAACAGTGATGGAACTTTAAAAATGGAGGAAG  247
      | |||||||||| ||||||||||||||| ||||||| |||||||||| ||
seq2  G-AGGCTTTATA-TTTCCTAACAGTGAT-GAACTTT-AAAATGGAGG-AG  215

seq1  TTATTTTATAGTAGGAATAAAATATTCCTGAGACAGGGAGGAAACCAAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATAGTAGGAATAAAATATTCCTGAGACAGGGAGGAAACCAAGA  265

seq1  ATGATGCTTAAAAGAAACCTAACTATATTGTTGATAGAGGTGTCAGAACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTTAAAAGAAACCTAACTATATTGTTGATAGAGGTGTCAGAACA  315

seq1  GGCAAGTTTTAGAAGCTCTGTAACATCCAGAAGAAATGAGGGATTTCCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTTTTAGAAGCTCTGTAACATCCAGAAGAAATGAGGGATTTCCAT  365

seq1  ATTAGTGCAAAATGTTAGTTGTGACACCATCAAGCAGTGTATTTGTGAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGCAAAATGTTAGTTGTGACACCATCAAGCAGTGTATTTGTGAAC  415

seq1  TCACAAGACTAATGAAAAATGAAGCTATGACCAAACATCTACACAGACAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGACTAATGAAAAATGAAGCTATGACCAAACATCTACACAGACAA  465

seq1  GGGTTCAGAATGACTTGGTAGTGCAGAGGGTGACAAATGGCCACCCATCG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAGAATGACTTGGTAGTGCAGAGGGTGACAAATGGCCACCCATCG  515

seq1  GTCATAGGCCATCACAGTCAGTAATAGGCCGCCCATATCGCCAAAAAGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGGCCATCACAGTCAGTAATAGGCCGCCCATATCGCCAAAAAGAA  565

seq1  AGAAGAAAGACACCTGAGTTAGGCATTCAGAATGAGTTATGGATTTCTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAGACACCTGAGTTAGGCATTCAGAATGAGTTATGGATTTCTTA  615

seq1  TGAGTCTGCATGTTTACCAGCATTTTGGGCATGGTGGTGCTGCTGAAGCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGCATGTTTACCAGCATTTTGGGCATGGTGGTGCTGCTGAAGCC  665

seq1  CATGTCAGACAATGAAAGGTTGAAGAGGAAAAAGTACATAGGGCTGTGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGACAATGAAAGGTTGAAGAGGAAAAAGTACATAGGGCTGTGGA  715

seq1  GGCGGGAATCAGAGCTGATGGCCAAGATGATGAGCACATTTCCAAGCACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGAATCAGAGCTGATGGCCAAGATGATGAGCACATTTCCAAGCACA  765

seq1  GTGAGCAGGTATATGAGCAGGAATAGTACAAATAAGACAGGTTGTAGTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAGGTATATGAGCAGGAATAGTACAAATAAGACAGGTTGTAGTTC  815

seq1  AGGGTCTTCTGAGAGTCCAAGGAGAAGGAATTCCAAAGTTCTTGTTAAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTTCTGAGAGTCCAAGGAGAAGGAATTCCAAAGTTCTTGTTAAAT  865

seq1  TATATGACTCCATACAGCTTGGAAATCTTTTGAAAAAAGAAAAGTTTGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGACTCCATACAGCTTGGAAATCTTTTGAAAAAAGAAAAGTTTGGA  915

seq1  GTGAATTAAGCACTCTATAGGCAACTGACTACATGCCTGTATTTCTGTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTAAGCACTCTATAGGCAACTGACTACATGCCTGTATTTCTGTGA  965

seq1  TCTAGCAATTCTTAAGAAATCATTCATATATGAGAAGTGTTAAGTTTTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAATTCTTAAGAAATCATTCATATATGAGAAGTGTTAAGTTTTTT  1015

seq1  ACTTAAATTATTTATTTAGAAAACAGTTCATAGTCTAGGGTCTTTGCTTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATTATTTATTTAGAAAACAGTTCATAGTCTAGGGTCTTTGCTTC  1065

seq1  TATTTGGTAGTTACTTGCTGCACTGAAGATGGTGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGTAGTTACTTGCTGCACTGAAGATGGTGAATTC  1104