BAC Information

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BAC

Clone NameB6Ng01-049O24
Chromosome9 (Build37)
Map Location 52,081,026 - 52,214,559
singlet/doubletdoublet
Overlap geneLOC100042876
Upstream geneGm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c
Downstream geneAI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049O24.bB6Ng01-049O24.g
ACCDH874043DH874044
length2441,063
definitionDH874043|Mus musculus domesticus DNA, BAC clone: B6Ng01-049O24, 5' end.DH874044|Mus musculus domesticus DNA, BAC clone: B6Ng01-049O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,214,316 - 52,214,559)(52,081,026 - 52,082,106)
sequence
tgggaatgcagagattataaagagttcattcctttctcttccttctgctt
tttctcctcagtaatgtccagcagagattactgtgtgtctagaaggtatc
agaaacttacaatcacagcgaccggggtcacagtagtgagcatggccaac
cagagcccctctctccagaagtttacctttattcagacaacagtgagtgt
tatgaaattagtagtggggacatgagagagggtgggtgagatag
gaattctcattctcagccacaccagcaattagcactaatgatctctctct
cccagacgtatgctttggagatgagatgagattgtatggggccaaagaac
atggattgccattcagataggcattgaccttgtctgtggtaatcaggtac
ccaggagccacggcgataggtttacatttggcatggcagttaaatgcaga
gcaaggcccttcactcacacccactgcattgatcactctggtatttaaat
ctgagcccggaagcctccgagtactgaagcaccattttcagattgctact
taagatgaaaatccaactttttttctgttgcatttacgaaactgaatcag
tcagaagaacactttgatacggtaaatacctacacatcagttcatctact
ttgaaattaatcaaaatatttaggcatctccacagaaaactctaatatgc
ctgaaacaaggcaatagttatttactccccaggatcagaatgtgttttgg
gaaatctctatttgactttgatgcaaagaataaaagctggtttcatggaa
ctctgttgtcagaataactaatgttttgaaaacacggtgattcagagcct
gtccgatgtggctattgagtgtgcatctcgctgaatctcagaggaaggga
ttgttcctttatcttgttctgtatttcctttggacgtgggctctttacca
ctgtgaacagtgaagagctaaactgttaacaggttcaaaggaaggcagcg
tggtgcgttgcaaaggcaagtgggagagtagccgcagagcggacatcagc
caccgttgctgaagagtccttttgccctccatgctcacagctcaacatgt
ctgatttccccaagaccctgggtgtagtgggaggtggcggagaggatcag
agccctggcttgtcattaaggagtatatgtgcagttctgtgaggcaaatc
cgtccatatcataatccagagcagtgcacctgcacacaagcgtttacctg
ctcatctcagactgcgctttcctgaaaatctagtatgtcagccatcttat
tacatacccttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52214316_52214559
seq2: B6Ng01-049O24.b_52_295 (reverse)

seq1  CTATCTCACCCACCCTCTCTCATGTCCCCACTACTAATTTCATAACACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCACCCACCCTCTCTCATGTCCCCACTACTAATTTCATAACACTC  50

seq1  ACTGTTGTCTGAATAAAGGTAAACTTCTGGAGAGAGGGGCTCTGGTTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGTCTGAATAAAGGTAAACTTCTGGAGAGAGGGGCTCTGGTTGGC  100

seq1  CATGCTCACTACTGTGACCCCGGTCGCTGTGATTGTAAGTTTCTGATACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCACTACTGTGACCCCGGTCGCTGTGATTGTAAGTTTCTGATACC  150

seq1  TTCTAGACACACAGTAATCTCTGCTGGACATTACTGAGGAGAAAAAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGACACACAGTAATCTCTGCTGGACATTACTGAGGAGAAAAAGCAG  200

seq1  AAGGAAGAGAAAGGAATGAACTCTTTATAATCTCTGCATTCCCA  244
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAGAAAGGAATGAACTCTTTATAATCTCTGCATTCCCA  244

seq1: chr9_52081026_52082106
seq2: B6Ng01-049O24.g_68_1130

seq1  GAATTCTCATTCTCAGCCACACCAGCAATTAGCACTAATGATCTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTCTCAGCCACACCAGCAATTAGCACTAATGATCTCTCTCT  50

seq1  CCCAGACGTATGCTTTGGAGATGAGATGAGATTGTATGGGGCCAAAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACGTATGCTTTGGAGATGAGATGAGATTGTATGGGGCCAAAGAAC  100

seq1  ATGGATTGCCATTCAGATAGGCATTGACCTTGTCTGTGGTAATCAGGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTGCCATTCAGATAGGCATTGACCTTGTCTGTGGTAATCAGGTAC  150

seq1  CCAGGAGCCACGGCGATAGGTTTACATTTGGCATGGCAGTTAAATGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCCACGGCGATAGGTTTACATTTGGCATGGCAGTTAAATGCAGA  200

seq1  GCAAGGCCCTTCACTCACACCCACTGCATTGATCACTCTGGTATTTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCCCTTCACTCACACCCACTGCATTGATCACTCTGGTATTTAAAT  250

seq1  CTGAGCCCGGAAGCCTCCGAGTACTGAAGCACCATTTTCAGATTGCTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCGGAAGCCTCCGAGTACTGAAGCACCATTTTCAGATTGCTACT  300

seq1  TAAGATGAAAATCCAACTTTTTTTCTGTTGCATTTACGAAACTGAATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGAAAATCCAACTTTTTTTCTGTTGCATTTACGAAACTGAATCAG  350

seq1  TCAGAAGAACACTTTGATACGGTAAATACCTACACATCAGTTCATCTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAACACTTTGATACGGTAAATACCTACACATCAGTTCATCTACT  400

seq1  TTGAAATTAATCAAAATATTTAGGCATCTCCACAGAAAACTCTAATATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTAATCAAAATATTTAGGCATCTCCACAGAAAACTCTAATATGC  450

seq1  CTGAAACAAGGCAATAGTTATTTACTCCCCAGGATCAGAATGTGTTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACAAGGCAATAGTTATTTACTCCCCAGGATCAGAATGTGTTTTGG  500

seq1  GAAATCTCTATTTGACTTTGATGCAAAGAATAAAAGCTGGTTTCATGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTCTATTTGACTTTGATGCAAAGAATAAAAGCTGGTTTCATGGAA  550

seq1  CTCTGTTGTCAGAATAACTAATGTTTTGAAAACACGGTGATTCAGAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTGTCAGAATAACTAATGTTTTGAAAACACGGTGATTCAGAGCCT  600

seq1  GTCCGATGTGGCTATTGAGTGTGCATCTCGCTGAATCTCAGAGGAAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGATGTGGCTATTGAGTGTGCATCTCGCTGAATCTCAGAGGAAGGGA  650

seq1  TTGTTCCTTTATCTTGTTCTGTATTTCCTTTGGACGTGGGCTCTTTACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTTTATCTTGTTCTGTATTTCCTTTGGACGTGGGCTCTTTACCA  700

seq1  CTGTGAACAGTGAAGAGCTAAACTGTTAACAGGTTCAAAGGAAGGCAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAACAGTGAAGAGCTAAACTGTTAACAGGTTCAAAGGAAGGCAGCG  750

seq1  TGGTGCGTTGCAAAGGCAAGTGGGAGAGTAGCCGCAGAGCGGACATCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCGTTGCAAAGGCAAGTGGGAGAGTAGCCGCAGAGCGGACATCAGC  800

seq1  CACCGTTGCTGAAGAGTCCTTTTGCCCTCCATGCTCACAGCTCAACATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACCGTTGCTGAAGAGTCCTTTTGCCCTCCATGCTCACAGCTCAACATG-  849

seq1  TCTGATTTCCCCAAGGACCCTGGGTGTAGTGGGAGGTGGCGGAGAAGGAT  900
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  TCTGATTTCCCCAA-GACCCTGGGTGTAGTGGGAGGTGGCGGAG-AGGAT  897

seq1  CAGAGCCCTGGCTTGTCATTAAAGAAGTAATATGTGCAGTTCTGTGAGGC  950
      |||||||||||||||||||| ||| ||| |||||||||||||||||||||
seq2  CAGAGCCCTGGCTTGTCATT-AAGGAGT-ATATGTGCAGTTCTGTGAGGC  945

seq1  AAATTCGTTCTATAATCATAAATCCAGAGCAGGTAGCA-CTGCACACTAG  999
      |||| || || || ||||| ||||||||||||   ||| |||||||| ||
seq2  AAATCCG-TCCAT-ATCAT-AATCCAGAGCAG--TGCACCTGCACACAAG  990

seq1  CGTTTGTACCTTGCTTCATCCTCAGACTGCCTTTTCTTGAAAAATCTTAT  1049
      ||||  |||| ||| |||| ||||||||||  |||| || |||||| || 
seq2  CGTT--TACC-TGC-TCAT-CTCAGACTGCGCTTTCCTG-AAAATC-TAG  1033

seq1  TATTGTCAGCCATCTTATTACATTACCCTTAC  1081
      || ||||||||||||||||||| |||||||||
seq2  TA-TGTCAGCCATCTTATTACA-TACCCTTAC  1063