BAC Information

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BAC

Clone NameB6Ng01-050B05
Chromosome9 (Build37)
Map Location 38,822,008 - 38,942,845
singlet/doubletdoublet
Overlap geneOlfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27
Upstream geneOlfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935
Downstream geneOlfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050B05.bB6Ng01-050B05.g
ACCDH874134DH874135
length988528
definitionDH874134|Mus musculus domesticus DNA, BAC clone: B6Ng01-050B05, 5' end.DH874135|Mus musculus domesticus DNA, BAC clone: B6Ng01-050B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,822,008 - 38,822,976)(38,942,312 - 38,942,845)
sequence
gaattctcaacagaagaatctcaaatggctgaaaaacacttaaagaaatg
ttcaacgtaattgatcatcagggaaatgcaaatcaaaacaacagtgtgat
tccatcgtacaacaatcagaatggctaagatgaaaaccactagagatagc
acccgctcttgaggatgtagagcaaggggaaaacccctccgatcctggtg
ggagggcaaacttgtacaaccacatgggaaatcaatttgaccttttctca
gcttactcagagcagtgaagtaagcaaacttactcactgtaccatctctc
caaccccatatttcatgtccttaattgatttaacagataatatctagttc
aaaaataattgttgcagcaatgaatgtaactatcattatatgtatgtata
aacaaaggatttataacagtaatactagactaatccatcttttgatatct
aatagtatgttaatttttgattagtagtaggatcaattctatggctaatg
atctatgtagccatacgtttgtgactcagttaatagtactgggaatgact
ttcatcttggagacaagggcatagttttaaatattatggttacttccata
atatttttgtcaccactataacattgaacaaagctttctatggaagtcaa
ggatcacaactaaacaggactactggtttttctcctctagtagaatgaaa
ggtacatgtctgtatgatgaaagctagccagtagtgttggcacttaaaag
ttggttctaacatgagttctctataccctatgagtcaagtacaaggtatc
ttcactaataaagtcttatcatcaggattggatgataactcttagttagg
agttcctatagattttatcaaacactataaccaaatttaaatctggaaag
ctagtgcttgcactatctacacacttattttcaaaatgctttggatgctg
ggtatttgagatttctggtactttacactttttttttc
accttcagattcattagaaataaacacataacaataattattagatgtca
aaacattaaataattttaatcataatacgaaaggggccagaagtactgta
ggagacaaagtaatgcagcaatttggggtgtacttggcaattacaatgac
ccagccagtgctttcatgatttcaaagaagcagtttctacatcaatggtg
cacatgagactgagcctctaaataatacatcatgactttgtgaggaagta
gacctgacacttccactccctattaagacatggactactaatagttctaa
agtggagcagactttgtcttcaattgtgttcttactaataagatcacaat
acaccactgtatagttctaaacttctagtcagataagatagtaaaacaaa
taaaaaattcatcaatgagggagaagacaattgtatgtacaatagattgt
agtaaagaatactggacagaagatggttatggtgataccagtcagagtgt
gtgtctgtggggtgtgtgggtgtgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_38822008_38822976
seq2: B6Ng01-050B05.b_48_1011

seq1  GAATTCTCAACAGAAGAATCTCAAATGGCTGAAAAACACTTAAAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACAGAAGAATCTCAAATGGCTGAAAAACACTTAAAGAAATG  50

seq1  TTCAACGTAATTGATCATCAGGGAAATGCAAATCAAAACAACAGTGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACGTAATTGATCATCAGGGAAATGCAAATCAAAACAACAGTGTGAT  100

seq1  TCCATCGTACAACAATCAGAATGGCTAAGATGAAAACCACTAGAGATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCGTACAACAATCAGAATGGCTAAGATGAAAACCACTAGAGATAGC  150

seq1  ACCCGCTCTTGAGGATGTAGAGCAAGGGGAAAACCCCTCCGATCCTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCTCTTGAGGATGTAGAGCAAGGGGAAAACCCCTCCGATCCTGGTG  200

seq1  GGAGGGCAAACTTGTACAACCACATGGGAAATCAATTTGACCTTTTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCAAACTTGTACAACCACATGGGAAATCAATTTGACCTTTTCTCA  250

seq1  GCTTACTCAGAGCAGTGAAGTAAGCAAACTTACTCACTGTACCATCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTCAGAGCAGTGAAGTAAGCAAACTTACTCACTGTACCATCTCTC  300

seq1  CAACCCCATATTTCATGTCCTTAATTGATTTAACAGATAATATCTAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCATATTTCATGTCCTTAATTGATTTAACAGATAATATCTAGTTC  350

seq1  AAAAATAATTGTTGCAGCAATGAATGTAACTATCATTATATGTATGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATTGTTGCAGCAATGAATGTAACTATCATTATATGTATGTATA  400

seq1  AACAAAGGATTTATAACAGTAATACTAGACTAATCCATCTTTTGATATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGATTTATAACAGTAATACTAGACTAATCCATCTTTTGATATCT  450

seq1  AATAGTATGTTAATTTTTGATTAGTAGTAGGATCAATTCTATGGCTAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATGTTAATTTTTGATTAGTAGTAGGATCAATTCTATGGCTAATG  500

seq1  ATCTATGTAGCCATACGTTTGTGACTCAGTTAATAGTACTGGGAATGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTAGCCATACGTTTGTGACTCAGTTAATAGTACTGGGAATGACT  550

seq1  TTCATCTTGGAGACAAGGGCATAGTTTTAAATATTATGGTTACTTCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTGGAGACAAGGGCATAGTTTTAAATATTATGGTTACTTCCATA  600

seq1  ATATTTTTGTCACCACTATAACATTGAACAAAGCTTTCTATGGAAGTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTGTCACCACTATAACATTGAACAAAGCTTTCTATGGAAGTCAA  650

seq1  GGATCACAACTAAACAGGACTACTGGTTTTTCTCCTCTAGTAGAATGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACAACTAAACAGGACTACTGGTTTTTCTCCTCTAGTAGAATGAAA  700

seq1  GGTACATGTCTGTATGATGAAAGCTAGCCAGTAGTGTTGGCACTTAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATGTCTGTATGATGAAAGCTAGCCAGTAGTGTTGGCACTTAAAAG  750

seq1  TTGGTTCTAACATGAGTTCTCTATACCCTATGAGTCAAGTACAAGGTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTAACATGAGTTCTCTATACCCTATGAGTCAAGTACAAGGTATC  800

seq1  TTCACTAATAAAGTCTTATCATCAGGATTGGATGATAACTCTTAGTTA-G  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTCACTAATAAAGTCTTATCATCAGGATTGGATGATAACTCTTAGTTAGG  850

seq1  AGTTCCTATAGATTTTATCAAACACTATAACCAAATTTAAATCTGGAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTATAGATTTTATCAAACACTATAACCAAATTTAAATCTGGAAAG  900

seq1  CTAGTGCTTGCACTATTCTACACCACTTATTTTTCAAAATTGCTTTGGAT  949
      ||||||||||||||| |||||| |||||| ||||||||| ||||||||||
seq2  CTAGTGCTTGCACTA-TCTACA-CACTTA-TTTTCAAAA-TGCTTTGGAT  946

seq1  TGCCTGGGTATTTGAGATTT  969
         |||||||||||||||||
seq2  --GCTGGGTATTTGAGATTT  964

seq1: chr9_38942312_38942845
seq2: B6Ng01-050B05.g_69_602 (reverse)

seq1  CACCCACACCCACACACCCCACAGACACACACTCTGACTGGTATCACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACACCCACACACCCCACAGACACACACTCTGACTGGTATCACCAT  50

seq1  AACCATCTTCTGTCCAGTATTCTTTACTACAATCTATTGTACATACAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTTCTGTCCAGTATTCTTTACTACAATCTATTGTACATACAATT  100

seq1  GTCTTCTCCCTCATTGATGAATTTTTTATTTGTTTTACTATCTTATCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTCCCTCATTGATGAATTTTTTATTTGTTTTACTATCTTATCTGA  150

seq1  CTAGAAGTTTAGAACTATACAGTGGTGTATTGTGATCTTATTAGTAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGTTTAGAACTATACAGTGGTGTATTGTGATCTTATTAGTAAGAA  200

seq1  CACAATTGAAGACAAAGTCTGCTCCACTTTAGAACTATTAGTAGTCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTGAAGACAAAGTCTGCTCCACTTTAGAACTATTAGTAGTCCATG  250

seq1  TCTTAATAGGGAGTGGAAGTGTCAGGTCTACTTCCTCACAAAGTCATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATAGGGAGTGGAAGTGTCAGGTCTACTTCCTCACAAAGTCATGAT  300

seq1  GTATTATTTAGAGGCTCAGTCTCATGTGCACCATTGATGTAGAAACTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATTTAGAGGCTCAGTCTCATGTGCACCATTGATGTAGAAACTGCT  350

seq1  TCTTTGAAATCATGAAAGCACTGGCTGGGTCATTGTAATTGCCAAGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAATCATGAAAGCACTGGCTGGGTCATTGTAATTGCCAAGTACA  400

seq1  CCCCAAATTGCTGCATTACTTTGTCTCCTACAGTACTTCTGGCCCCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATTGCTGCATTACTTTGTCTCCTACAGTACTTCTGGCCCCTTTC  450

seq1  GTATTATGATTAAAATTATTTAATGTTTTGACATCTAATAATTATTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATGATTAAAATTATTTAATGTTTTGACATCTAATAATTATTGTTA  500

seq1  TGTGTTTATTTCTAATGAATCTGAAGGTGAATTC  534
      ||||||||||||||||||||||||||||||||||
seq2  TGTGTTTATTTCTAATGAATCTGAAGGTGAATTC  534