BAC Information

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BAC

Clone NameB6Ng01-050O24
Chromosome2 (Build37)9 (Build37)
Map Location 116,339,782 - 116,340,33048,094,609 - 48,095,182
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
Downstream geneLOC433464, Tmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050O24.bB6Ng01-050O24.g
ACCDH874734DH874735
length956568
definitionDH874734|Mus musculus domesticus DNA, BAC clone: B6Ng01-050O24, 5' end.DH874735|Mus musculus domesticus DNA, BAC clone: B6Ng01-050O24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,339,782 - 116,340,330)(48,094,609 - 48,095,182)
sequence
gaattctatttgagaaagttctcatcttaaacaagtttcctgttttttaa
cattgtttgaaattgagcaaccttgagaggccttttctggttcatcaggg
tagttgcataattttttaaaacgcattttcaagagtgacagattacactc
cttttttaaaaaaattttttattaggtatttagctcatttacatttccaa
tgctataccaaaagtcccccatacccacccacccccactcccctacccac
ccactccccctttttggccctggcgttcccctgtactggggcatataaaa
tttgcgtgtccaatgggcctctctttgcagtgatggccgactaggccatc
ttttgatacatatgcagctagagtcaagagctccggggtactggttagtt
cataatgttgatccacctatagggttgcagatccctttagctccttgggt
actttctctagctcctccattgggagccctgtgatccatccattagctga
ctgtgagcatccacttctgtgtttgctaggccccggcatagtctcacaag
agacagctacatctgggtcctttcgataaaatcttgctagtgtatgcaat
ggtgtcagcgtttggatgctgattatggggtggatccctggatatggcag
tctctacatggtccatcctttcatctcagctccaaactttgtctctgtaa
ctccttccaagggtgttttgttcccacttctaggaggggcatagtgtcca
cacttcagtcttcattttttttgagtttcatgtgttaaggaaattgtatc
ttatatcttggggttcctaggtttggggctaatatccacttatcagtgag
tacatatgtgtgagtcctttgtgaatgtgtacctcactcaggatgatgcc
ctccaggtccatccatttggctaggaatttcataatcattctttttaata
gctgag
aacctgagtagcaggctaagaatttcttgagagtgtaaaaaggcaaaaga
aaaagggaaattgcagccggtcatggtggcacacgcctttaatcccagca
cttgggaggcagaggcaggaggatttctgagttcagcctggtctacaaag
tgagttccaggacagccagggaacagttccaggacaacctgagaaacact
gtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaaggagggggaggggggg
aattgctctagttactctgaaatctgcccactatcagaatcataaaaagt
aaaacagagacgttactcccagtttcttttaaagaatatttgcatgattg
gagaacagcagctatccagatggatctggtcatacatgtcctggttggga
tcaaggactgggaggagtcaaaatgagcatgccctggaagttaattggct
ttccaatgcccctgggagttcgtcggcttcagttgctgtgacaaaacact
ggaggttgctactaggaggaaaagatacattttgattcacagtttctgag
ttttggggccttggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_116339782_116340330
seq2: B6Ng01-050O24.b_377_1002 (reverse)

seq1  CTCAGCTATTAAAAA-AATGAATTTATGAAATTCCTAGGCAAATGCAGGG  49
      ||||||||||||||| |||||  ||||||||||||||| |||||| | ||
seq2  CTCAGCTATTAAAAAGAATGA--TTATGAAATTCCTAGCCAAATGGATGG  48

seq1  ACCTGGAGGGTATTATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCG  99
      |||||||||| || |||||||||||||| || || ||||||||| |||| 
seq2  ACCTGGAGGGCATCATCCTGAGTGAGGT-ACACATTCACAAAGG-ACTCA  96

seq1  CACAATATGTACTCACTGATAAGTGGATATTAGCCC--------------  135
      ||| ||||||||||||||||||||||||||||||||              
seq2  CAC-ATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGAACC  145

seq1  ------------------TTTGC---------------------------  140
                        ||| |                           
seq2  CCAAGATATAAGATACAATTTCCTTAACACATGAAACTCAAAAAAAATGA  195

seq1  ----------------------CCCTTCTTAGAATTGGGAACAAAACACC  168
                            ||| || ||||| |||||||||||||||
seq2  AGACTGAAGTGTGGACACTATGCCCCTCCTAGAAGTGGGAACAAAACACC  245

seq1  CATGGAAGGAGTTACAGAGACAAACTTTGGAGCTGAGACAAAAGGATGGA  218
      | |||||||||||||||||||||| |||||||||||||  ||||||||||
seq2  CTTGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGA  295

seq1  CCTCCTAGAGACTGCCATATCCAGGGATCCATCCCATAATAAGCCTCCAA  268
      ||   |||||||||||||||||||||||||| |||||||| ||| |||||
seq2  CCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATCAGCATCCAA  345

seq1  ACGCTTACACCATTGCATACACTAGCAAGTGTTTGCTGAAAGGACCCTGA  318
      ||||| |||||||||||||||||||||||  |||   |||||||||| ||
seq2  ACGCTGACACCATTGCATACACTAGCAAGATTTTATCGAAAGGACCCAGA  395

seq1  TATAGCTGTCTCTTGTGAGACTATGCTGGGGCCTAGCAAACACATAAGTG  368
      | |||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  TGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTG  445

seq1  GATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATCTAGGAG  418
      |||||||||||||||||| ||||||||||||||||| ||||||  |||||
seq2  GATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAG  495

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACTCTATAGGTGGA  468
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  545

seq1  ACAACATTATGAACTAACCAGTACCCTGGAGCTCTTGACTCTAGCTGCAT  518
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  595

seq1  ATGTATCAAAAGATGGCCTAGTTGGCCATCA  549
      |||||||||||||||||||||| ||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCA  626

seq1: chr9_48094609_48095182
seq2: B6Ng01-050O24.g_67_640

seq1  GAATTCAACCTGAGTAGCAGGCTAAGAATTTCTTGAGAGTGTAAAAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTGAGTAGCAGGCTAAGAATTTCTTGAGAGTGTAAAAAGGC  50

seq1  AAAAGAAAAAGGGAAATTGCAGCCGGTCATGGTGGCACACGCCTTTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAGGGAAATTGCAGCCGGTCATGGTGGCACACGCCTTTAATC  100

seq1  CCAGCACTTGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCAGCCTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCAGCCTGGTCT  150

seq1  ACAAAGTGAGTTCCAGGACAGCCAGGGAACAGTTCCAGGACAACCTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGAGTTCCAGGACAGCCAGGGAACAGTTCCAGGACAACCTGAGA  200

seq1  AACACTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAGGAGGGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAGGAGGGGGAG  250

seq1  GGGGGGAATTGCTCTAGTTACTCTGAAATCTGCCCACTATCAGAATCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAATTGCTCTAGTTACTCTGAAATCTGCCCACTATCAGAATCATA  300

seq1  AAAAGTAAAACAGAGACGTTACTCCCAGTTTCTTTTAAAGAATATTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAAACAGAGACGTTACTCCCAGTTTCTTTTAAAGAATATTTGCA  350

seq1  TGATTGGAGAACAGCAGCTATCCAGATGGATCTGGTCATACATGTCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGAGAACAGCAGCTATCCAGATGGATCTGGTCATACATGTCCTGG  400

seq1  TTGGGATCAAGGACTGGGAGGAGTCAAAATGAGCATGCCCTGGAAGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATCAAGGACTGGGAGGAGTCAAAATGAGCATGCCCTGGAAGTTAA  450

seq1  TTGGCTTTCCAATGCCCCTGGGAGTTCGTCGGCTTCAGTTGCTGTGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTCCAATGCCCCTGGGAGTTCGTCGGCTTCAGTTGCTGTGACAA  500

seq1  AACACTGGAGGCTGCTACTAGGAGGAAAAGATACATTTTGATTCACAGTT  550
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACACTGGAGGTTGCTACTAGGAGGAAAAGATACATTTTGATTCACAGTT  550

seq1  TCTGAGTTTTGGGGCCTTGGTTGG  574
      ||||||||||||||||||||| ||
seq2  TCTGAGTTTTGGGGCCTTGGTGGG  574