BAC Information

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BAC

Clone NameB6Ng01-054A18
Chromosome9 (Build37)
Map Location 32,329,834 - 32,477,003
singlet/doubletdoublet
Overlap geneFli1
Upstream geneEG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1
Downstream geneLOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054A18.bB6Ng01-054A18.g
ACCDH876911DH876912
length1,226149
definitionDH876911|Mus musculus domesticus DNA, BAC clone: B6Ng01-054A18, 5' end.DH876912|Mus musculus domesticus DNA, BAC clone: B6Ng01-054A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,329,834 - 32,331,088)(32,476,855 - 32,477,003)
sequence
gaattccacaatgatatgcagcagaaaaaccaccgtatgtctcatcatga
gagaatttactaatgaaggcagatgttcccaggagaaggatttagtactt
attccaatgattccatagctgtagtaggtacagtatgtcatatacactga
tatccacaggacagggcatgaagcaatagttaagttgctttatgttttga
gatactaagaatatacaccttttgaactgaggtacaacaaaccaatataa
gtagagaaagcatactccagagggagattggctttcctggaccatccagc
tagttacttgcccaattaagttgctttgttcacattcatagctaaggaga
aaccatctcacaaagagttacagagatctggaaactaaagaaacaaacca
tctgttaagagtatggagccctacgcaataggaaatcatattttcatggt
ggcataaagcagaaagcattagagctgaaaacaaccttcagaagaatttg
ggtctgtgccagtattttccaaagaggaaaccaaagtcactgtgttggat
aaggactactctttggtcaactttattttcccaacaagagggtatgtatc
aaaggcccatattgttcttcaacaaatctagtaagcattcaatcatgata
tgtaaatatccatttgttcaatttttattgcctccactagtagagaaggg
gaaaaataagtattatattcttagtggtcagcacagatttggttgttgaa
gggggacattgctatgctaatccaaagctccgaccccagaccagcatggt
aacctagcaacactgagcacagttactttactttggaattctccacagag
taatggaggtagttgggtgtggtggttcatgactgtaacaggagatgttg
ataaaagaacaaggacttcaaggtccacatcattacatagtgtggctgag
gcctgtctgagcaacagagactttgtctcagaaagaaaaccaagtgacaa
tgaaaggatgaatggaagccctggtcttcatgcatacaacaaacccactg
ctgacttgtgaaaagaatgcatgtgagttcatccttcgcctcagtcgaga
cttaagtgatgcttggaccatattttatggtattattacattaaatatat
ggattaaggctcctttcattcattcatcactgaaccgcctaggcagaata
gccaacctagctatatcttggctcta
ctcagcctaaccttggagtagggctttaaagcctgtgcctcagcagattc
tggcgtttctagtttaatgagtccaaagcaagagttaaatcttacatctc
taagtcctcctcctcctcctcctcctcctcctcctcctcctcctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_32329834_32331088
seq2: B6Ng01-054A18.b_45_1270

seq1  GAATTCCACAATGATATGCAGCAGAAAAACCACCGTATGTCTCATCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAATGATATGCAGCAGAAAAACCACCGTATGTCTCATCATGA  50

seq1  GAGAATTTACTAATGAAGGCAGATGTTCCCAGGAGAAGGATTTAGTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTACTAATGAAGGCAGATGTTCCCAGGAGAAGGATTTAGTACTT  100

seq1  ATTCCAATGATTCCATAGCTGTAGTAGGTACAGTATGTCATATACACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATGATTCCATAGCTGTAGTAGGTACAGTATGTCATATACACTGA  150

seq1  TATCCACAGGACAGGGCATGAAGCAATAGTTAAGTTGCTTTATGTTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACAGGACAGGGCATGAAGCAATAGTTAAGTTGCTTTATGTTTTGA  200

seq1  GATACTAAGAATATACACCTTTTGAACTGAGGTACAACAAACCAATATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTAAGAATATACACCTTTTGAACTGAGGTACAACAAACCAATATAA  250

seq1  GTAGAGAAAGCATACTCCAGAGGGAGATTGGCTTTCCTGGACCATCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAAAGCATACTCCAGAGGGAGATTGGCTTTCCTGGACCATCCAGC  300

seq1  TAGTTACTTGCCCAATTAAGTTGCTTTGTTCACATTCATAGCTAAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACTTGCCCAATTAAGTTGCTTTGTTCACATTCATAGCTAAGGAGA  350

seq1  AACCATCTCACAAAGAGTTACAGAGATCTGGAAACTAAAGAAACAAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTCACAAAGAGTTACAGAGATCTGGAAACTAAAGAAACAAACCA  400

seq1  TCTGTTAAGAGTATGGAGCCCTACGCAATAGGAAATCATATTTTCATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAAGAGTATGGAGCCCTACGCAATAGGAAATCATATTTTCATGGT  450

seq1  GGCATAAAGCAGAAAGCATTAGAGCTGAAAACAACCTTCAGAAGAATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAAGCAGAAAGCATTAGAGCTGAAAACAACCTTCAGAAGAATTTG  500

seq1  GGTCTGTGCCAGTATTTTCCAAAGAGGAAACCAAAGTCACTGTGTTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTGCCAGTATTTTCCAAAGAGGAAACCAAAGTCACTGTGTTGGAT  550

seq1  AAGGACTACTCTTTGGTCAACTTTATTTTCCCAACAAGAGGGTATGTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTACTCTTTGGTCAACTTTATTTTCCCAACAAGAGGGTATGTATC  600

seq1  AAAGGCCCATATTGTTCTTCAACAAATCTAGTAAGCATTCAATCATGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCCATATTGTTCTTCAACAAATCTAGTAAGCATTCAATCATGATA  650

seq1  TGTAAATATCCATTTGTTCAATTTTTATTGCCTCCACTAGTAGAGAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATATCCATTTGTTCAATTTTTATTGCCTCCACTAGTAGAGAAGGG  700

seq1  GAAAAATAAGTATTATATTCTTAGTGGTCAGCACAGATTTGGTTGTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAAGTATTATATTCTTAGTGGTCAGCACAGATTTGGTTGTTGAA  750

seq1  GGGGGACATTGCTATGCTAATCCAAAGCTCCGACCCCAGACCAGCATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACATTGCTATGCTAATCCAAAGCTCCGACCCCAGACCAGCATGGT  800

seq1  AACCTAGCAACACTGAGCACAGTTACTTTACTTTGGAATTCTCCACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGCAACACTGAGCACAGTTACTTTACTTTGGAATTCTCCACAGAG  850

seq1  TAATGGAGGTAGTTGGGTGTGGTGGTTCATGACTGTAACAGGAGATGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAGGTAGTTGGGTGTGGTGGTTCATGACTGTAACAGGAGATGTTG  900

seq1  ATAAAAGAACAAGGACTTCAAGGTCCACATCATTACATAGTGTGGCTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAACAAGGACTTCAAGGTCCACATCATTACATAGTGTGGCTGAG  950

seq1  GCCTGTCTGAGCAACAGGAGACTTTGTCTCAGAAAGAAAACCAAGGTGAC  1000
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  GCCTGTCTGAGCAACA-GAGACTTTGTCTCAGAAAGAAAACCAA-GTGAC  998

seq1  AATGAAAGGATGAATGGAAGCCCTGGTCTCCATGCATACAACAAACCCAC  1050
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATGAAAGGATGAATGGAAGCCCTGGTCTTCATGCATACAACAAACCCAC  1048

seq1  TGCTGACTTGTGAAAAGAATGCATGTGAGTTCATCCTTCCGCCTCAGTCG  1100
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGCTGACTTGTGAAAAGAATGCATGTGAGTTCATCCTT-CGCCTCAGTCG  1097

seq1  AGACTTTAAGGTGATGGCTTTGACCATAATTTTATTGGTATTATTTAAAA  1150
      ||||||  | ||||| |||| |||||| |||||| ||||||||||  | |
seq2  AGACTT--AAGTGAT-GCTTGGACCAT-ATTTTA-TGGTATTATT--ACA  1140

seq1  TTAAATTTAATTGGATTAAAAGGTGCTTCCTTTCATTTCAATTTCATCAC  1200
      |||||| ||  ||||||||     |  |||||||| ||||  ||||||||
seq2  TTAAATATA--TGGATTAA-----GGCTCCTTTCA-TTCA--TTCATCAC  1180

seq1  TGAACACGCCGAGGCAAGAAATAGCCAACACTTTAAGGCTATATCTTGGG  1250
      ||||| |||| |||||   |||||||||| ||     |||||||||| ||
seq2  TGAAC-CGCCTAGGCA--GAATAGCCAAC-CT----AGCTATATCTT-GG  1221

seq1  CTCTA  1255
      |||||
seq2  CTCTA  1226

seq1: chr9_32476855_32477003
seq2: B6Ng01-054A18.g_73_221 (reverse)

seq1  GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACTTAG  50

seq1  AGATGTAAGATTTAACTCTTGCTTTGGACTCATTAAACTAGAAACGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAGATTTAACTCTTGCTTTGGACTCATTAAACTAGAAACGCCAG  100

seq1  AATCTGCTGAGGCACAGGCTTTAAAGCCCTACTCCAAGGTTAGGCTGAG  149
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCTGAGGCACAGGCTTTAAAGCCCTACTCCAAGGTTAGGCTGAG  149