BAC Information

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BAC

Clone NameB6Ng01-056M23
Chromosome9 (Build37)
Map Location 35,137,516 - 35,332,274
singlet/doubletdoublet
Overlap geneCdon
Upstream geneKirrel3, St3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394
Downstream geneDdx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025, LOC671003
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056M23.bB6Ng01-056M23.g
ACCDH878857DH878858
length1,146891
definitionDH878857|Mus musculus domesticus DNA, BAC clone: B6Ng01-056M23, 5' end.DH878858|Mus musculus domesticus DNA, BAC clone: B6Ng01-056M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,331,116 - 35,332,274)(35,137,516 - 35,138,406)
sequence
gaattcttcccagctgtcagaacctgagactttcaataatcattccaaag
aagtcagattcaggccatagaggtgggacctgggggtgggggcccatact
ctccatacctcctcatgtgattcttcgggaaccaaaacctgatgaaaagt
attgctttttctataagcaacaaggttgggagttccaactttctggccct
tggcaaatagtaggctcttgtttcccagccccgagcttatagtctctaca
ttcagctttgtaacactttataacccttttaacaggcttcaaccctgtag
acctatttctgctttaccagctactccttttttggcttcagccactagag
ggcgtgtgcaggctggagtggatggctagacaagcattggtgctcccagc
gagtagcacccaaatggtgcctccttcctcccagcagtggttggccgtcc
tacatcaggtgccttccacatttgtaacatcatcgtggaccccactatcc
acatccacccctatactcccgcccaagagactccaggtctgggtacacaa
gcccttccttctcactccaggaccccaccaccaactgagtatgtcccctc
ttcagaggcccctttcttgagaacttcccggctttctccagccccgagag
cagaaggtgaccttgcaggtgtagcctccccatattttagccttctctgg
ttaccctccccttacctaattaaccttgggctttgtcatcaattctttat
gctaaatgttctttttcagctagtgcctggtttctgtctcccgacaggat
ccaatttggcacaaataatgaggaactgaggtttttctggagctggaggc
tgcttctcttggctgccctgcacacagctcgcctcccgcctccattccca
gaattatttggctgcttgttgccaaggagacggctgacaattcccagttg
ccaagtctcccccctgagcctatggaagaaattcaggaacttcctactcc
ttcctgaaccttgccagaaaacttggaacaccgggccaggttgggtggag
gctttgaaagaggagaggaagcagccatgtcgaaaatgaaaagaaacttg
gagttctgtggaccctggattcttcccaaaatcccagggctggcct
gaattcactgtgtgaacctgaagttggcagggccgatctcaggtacttgc
taggagcctgaacaagttccagtagcttcctgggtgagctgcctcagaaa
ggagcggaatcagctttgaactgagcacacaggcagatggccagttagtg
ctgtacccttggagtgactgccacacccactctcagccatcaggctgtgc
gctacaccagacatcctgctttagcttacggtctggtggggcagggtggg
caggaggaggatttgagttggaatgcttaagaggtccaagagagggtagc
ctggcctctgaagggtgaaaaacccgtggccctggagtgagatcttggtg
gctggccaaggcacctttaattactgacaggtgccatggaacggcagctc
aaagctccctggatcacaagtcatgtcaaaagatggaaatgttcaagatg
gactctcagtgcgcagaagcactggccctatctcagtataaaccttgttt
gcttttggccattgttgtagactacatacaggaataactgccacatactg
ggtaattagcctctttgctctggcatctcttctgaggacctgtgagagtg
gctcaggtgagaaaaccagaggtaggatggagaatagacactgtctcctt
gctaccctgctggggagagcagatggaggagaacaagcagtcaggatgtg
gaaaacagagagacctttaccgaagaagcaaaaggttattgcctttgtca
ggaggccctatgggtcaatgctccaggccagcttccctcttctcaccatc
tttccaggcttgtagagccctctgtggagaagccagagccctactcttgg
tttagagagggaggaactgcttcagaattctggagagctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_35331116_35332274
seq2: B6Ng01-056M23.b_44_1189 (reverse)

seq1  AGGCCAGGCACCTGGGATCTGTGGAGAAATCCAGAGTCCACAGAAACCTC  50
      |||||||   |||||||| |  |||  ||||||| ||||||||||  |||
seq2  AGGCCAG--CCCTGGGATTTTGGGAAGAATCCAGGGTCCACAGAA--CTC  46

seq1  CAGCTTCTCTCTTCATCTTTCAGCACTGGCTGGCTTCCCTCTCCTCCTTT  100
      ||  || ||| ||||| ||||  || ||||| |||| |||||||| ||||
seq2  CAAGTT-TCTTTTCAT-TTTCGACA-TGGCT-GCTT-CCTCTCCT-CTTT  90

seq1  CAAAGCCCTCCACCCCAACCTGGCCCGGTGTTCCAAGTTTTCTGGCAAAG  150
      ||||| |||||| ||||||||||||||||||||||||||||||||| |||
seq2  CAAAG-CCTCCA-CCCAACCTGGCCCGGTGTTCCAAGTTTTCTGGC-AAG  137

seq1  GCTCAGGAAGGAGTAGGGAGTTCCCTGAATTTC-TCCATAGGCTTCAGGG  199
      | ||||||||||||||| |||| |||||||||| ||||||||| ||||||
seq2  GTTCAGGAAGGAGTAGGAAGTT-CCTGAATTTCTTCCATAGGC-TCAGGG  185

seq1  GGGAGACTTGGCAACTGGGAATTGTCAGCCGTCTCCTTGGCAACTAGCAG  249
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGGAGACTTGGCAACTGGGAATTGTCAGCCGTCTCCTTGGCAACAAGCAG  235

seq1  CCAAATAATTCTGGGAATGGAGGCGGGAGGCGAGCTGTGTGCAGGGCAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAATTCTGGGAATGGAGGCGGGAGGCGAGCTGTGTGCAGGGCAGC  285

seq1  CAAGAGAAGCAGCCTCCAGCTCCAGAAAAACCTCAGTTCCTCATTATTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAAGCAGCCTCCAGCTCCAGAAAAACCTCAGTTCCTCATTATTTG  335

seq1  TGCC-AATTGGATCCTGTCGGGAGACAGAAACCAGGCACTAGCTGAAAAA  398
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAATTGGATCCTGTCGGGAGACAGAAACCAGGCACTAGCTGAAAAA  385

seq1  GAACATTTAGCATAAAGAATTGATGACAAAGCCCAAGGTTAATTAGGTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTAGCATAAAGAATTGATGACAAAGCCCAAGGTTAATTAGGTAA  435

seq1  GGGGAGGGTAACCAGAGAAGGCTAAAATATGGGGAGGCTACACCTGCAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGTAACCAGAGAAGGCTAAAATATGGGGAGGCTACACCTGCAAG  485

seq1  GTCACCTTCTGCTCTCGGGGCTGGAGAAAGCCGGGAAGTTCTCAAGAAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTTCTGCTCTCGGGGCTGGAGAAAGCCGGGAAGTTCTCAAGAAAG  535

seq1  GGGCCTCTGAAGAGGGGACATACTCAGTTGGTGGTGGGGTCCTGGAGTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCTGAAGAGGGGACATACTCAGTTGGTGGTGGGGTCCTGGAGTGA  585

seq1  GAAGGAAGGGCTTGTGTACCCAGACCTGGAGTCTCTTGGGCGGGAGTATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGGCTTGTGTACCCAGACCTGGAGTCTCTTGGGCGGGAGTATA  635

seq1  GGGGTGGATGTGGATAGTGGGGTCCACGATGATGTTACAAATGTGGAAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGATGTGGATAGTGGGGTCCACGATGATGTTACAAATGTGGAAGG  685

seq1  CACCTGATGTAGGACGGCCAACCACTGCTGGGAGGAAGGAGGCACCATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGATGTAGGACGGCCAACCACTGCTGGGAGGAAGGAGGCACCATTT  735

seq1  GGGTGCTACTCGCTGGGAGCACCAATGCTTGTCTAGCCATCCACTCCAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTACTCGCTGGGAGCACCAATGCTTGTCTAGCCATCCACTCCAGC  785

seq1  CTGCACACGCCCTCTAGTGGCTGAAGCCAAAAAAGGAGTAGCTGGTAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACGCCCTCTAGTGGCTGAAGCCAAAAAAGGAGTAGCTGGTAAAG  835

seq1  CAGAAATAGGTCTACAGGGTTGAAGCCTGTTAAAAGGGTTATAAAGTGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAGGTCTACAGGGTTGAAGCCTGTTAAAAGGGTTATAAAGTGTT  885

seq1  ACAAAGCTGAATGTAGAGACTATAAGCTCGGGGCTGGGAAACAAGAGCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTGAATGTAGAGACTATAAGCTCGGGGCTGGGAAACAAGAGCCT  935

seq1  ACTATTTGCCAAGGGCCAGAAAGTTGGAACTCCCAACCTTGTTGCTTATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGCCAAGGGCCAGAAAGTTGGAACTCCCAACCTTGTTGCTTATA  985

seq1  GAAAAAGCAATACTTTTCATCAGGTTTTGGTTCCCGAAGAATCACATGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGCAATACTTTTCATCAGGTTTTGGTTCCCGAAGAATCACATGAG  1035

seq1  GAGGTATGGAGAGTATGGGCCCCCACCCCCAGGTCCCACCTCTATGGCCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATGGAGAGTATGGGCCCCCACCCCCAGGTCCCACCTCTATGGCCT  1085

seq1  GAATCTGACTTCTTTGGAATGATTATTGAAAGTCTCAGGTTCTGACAGCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGACTTCTTTGGAATGATTATTGAAAGTCTCAGGTTCTGACAGCT  1135

seq1  GGGAAGAATTC  1159
      |||||||||||
seq2  GGGAAGAATTC  1146

seq1: chr9_35137516_35138406
seq2: B6Ng01-056M23.g_72_962

seq1  GAATTCACTGTGTGAACCTGAAGTTGGCAGGGCCGATCTCAGGTACTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTGAACCTGAAGTTGGCAGGGCCGATCTCAGGTACTTGC  50

seq1  TAGGAGCCTGAACAAGTTCCAGTAGCTTCCTGGGTGAGCTGCCTCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCCTGAACAAGTTCCAGTAGCTTCCTGGGTGAGCTGCCTCAGAAA  100

seq1  GGAGCGGAATCAGCTTTGAACTGAGCACACAGGCAGATGGCCAGTTAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGGAATCAGCTTTGAACTGAGCACACAGGCAGATGGCCAGTTAGTG  150

seq1  CTGTACCCTTGGAGTGACTGCCACACCCACTCTCAGCCATCAGGCTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCCTTGGAGTGACTGCCACACCCACTCTCAGCCATCAGGCTGTGC  200

seq1  GCTACACCAGACATCCTGCTTTAGCTTACGGTCTGGTGGGGCAGGGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACCAGACATCCTGCTTTAGCTTACGGTCTGGTGGGGCAGGGTGGG  250

seq1  CAGGAGGAGGATTTGAGTTGGAATGCTTAAGAGGTCCAAGAGAGGGTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAGGATTTGAGTTGGAATGCTTAAGAGGTCCAAGAGAGGGTAGC  300

seq1  CTGGCCTCTGAAGGGTGAAAAACCCGTGGCCCTGGAGTGAGATCTTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCTGAAGGGTGAAAAACCCGTGGCCCTGGAGTGAGATCTTGGTG  350

seq1  GCTGGCCAAGGCACCTTTAATTACTGACAGGTGCCATGGAACGGCAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCAAGGCACCTTTAATTACTGACAGGTGCCATGGAACGGCAGCTC  400

seq1  AAAGCTCCCTGGATCACAAGTCATGTCAAAAGATGGAAATGTTCAAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCCCTGGATCACAAGTCATGTCAAAAGATGGAAATGTTCAAGATG  450

seq1  GACTCTCAGTGCGCAGAAGCACTGGCCCTATCTCAGTATAAACCTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCAGTGCGCAGAAGCACTGGCCCTATCTCAGTATAAACCTTGTTT  500

seq1  GCTTTTGGCCATTGTTGTAGACTACATACAGGAATAACTGCCACATACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGGCCATTGTTGTAGACTACATACAGGAATAACTGCCACATACTG  550

seq1  GGTAATTAGCCTCTTTGCTCTGGCATCTCTTCTGAGGACCTGTGAGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTAGCCTCTTTGCTCTGGCATCTCTTCTGAGGACCTGTGAGAGTG  600

seq1  GCTCAGGTGAGAAAACCAGAGGTAGGATGGAGAATAGACACTGTCTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGTGAGAAAACCAGAGGTAGGATGGAGAATAGACACTGTCTCCTT  650

seq1  GCTACCCTGCTGGGGAGAGCAGATGGAGGAGAACAAGCAGTCAGGATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCTGCTGGGGAGAGCAGATGGAGGAGAACAAGCAGTCAGGATGTG  700

seq1  GAAAACAGAGAGACCTTTACCGAAGAAGCAAAAGGTTATTGCCTTTGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGAGAGACCTTTACCGAAGAAGCAAAAGGTTATTGCCTTTGTCA  750

seq1  GGAGGCCCTAT-GGTCAATGCTCCAGGCCAGCTTCCCTCTTCTTCACCCA  799
      ||||||||||| |||||||||||||||||||||||||||||| ||| |||
seq2  GGAGGCCCTATGGGTCAATGCTCCAGGCCAGCTTCCCTCTTC-TCA-CCA  798

seq1  TCTTTCCAGGCTTGGAGAGCCCTCTGTGGAGGAAGCCAGAGCCCTACTC-  848
      |||||||||||||| ||||||||||||||| |||||||||||||||||| 
seq2  TCTTTCCAGGCTTGTAGAGCCCTCTGTGGA-GAAGCCAGAGCCCTACTCT  847

seq1  TGGTTAAGAGAGGGAGGAACTGC-TCAGAATTCAGGAGAGCTGA  891
      ||||| ||||||||||||||||| ||||||||| ||||||||||
seq2  TGGTTTAGAGAGGGAGGAACTGCTTCAGAATTCTGGAGAGCTGA  891