BAC Information

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BAC

Clone NameB6Ng01-058E07
Chromosome9 (Build37)
Map Location 64,356,871 - 64,503,294
singlet/doubletdoublet
Overlap geneMegf11
Upstream geneIqch, 2310007F21Rik, Smad3, LOC100040009, Smad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l
Downstream geneRab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058E07.bB6Ng01-058E07.g
ACCDH879894DH879895
length881,036
definitionDH879894|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E07, 5' end.DH879895|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,356,871 - 64,356,958)(64,502,252 - 64,503,294)
sequence
gaattccaagtgcctggtgcaggcctgagctttctgaacgcatgaaagac
cttcgctggaggggtggagatgatggatgggagggtgg
gaattcagttagaccagaggtactcacctcagacatcttgctttctctat
cctacctggacatttggcactgactggaatcatctttgggtgtcagaact
tgggagtgagctgtgcatctgatgggtgggagccagggaccctgctgaat
ggtctatagagcacaagactgttctgtatgaccaaaccaggtgggttgcc
tgatacagactgagcagcacatgtgtcaggggctcagtcataaggctggc
acaccaggagaacggggaatatttaaaaagcaagtggggcagaacgatct
aggaggatgcactgcttaagataaactcagccatgcctgtcactgaaggc
cgagacagtggttagaggcaggctgctggtgcccatgagggtccaggatt
ggggcaaggcagtcaccaaggaggaagtgctttggagcactgcccagagc
tggttgggcaggcaccatccaaggatccacgcctaaggatggcgcttgcc
tccccgttccttaaaacgtgacacacgttaaagacgataaagcaaataat
cattaatattggatgggctgagattagcgacagagaagagggagtccttc
cagattaataatgcatggaggactccttcagaagaaagataaattatgca
gtgcgcggttgccgaggaagggagggaaacaatggccttttaatttgggg
cttgagtggatctctgtggtggagactcttcctgaatggggacctcagga
gcctccttgcttcctgtccttggcttccagcaaggatggagtgtccccat
gctgtcttccatgtagtagtgaaccagttttctcgttcccatacttggga
cccttaagatctctcaccctgtccttcagttcagcaaaagccatcttctt
ctagatgccctttctgccccacatggtgctctcttgtggaccttttttgc
acatttcttcaggtcacattactgggacattattggaactcagcaagcag
gttcataattctactttactttcctcacctctgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_64356871_64356958
seq2: B6Ng01-058E07.b_43_130

seq1  GAATTCCAAGTGCCTGGTGCAGGCCTGAGCTGTCTGAACGCATGAAAGAC  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAATTCCAAGTGCCTGGTGCAGGCCTGAGCTTTCTGAACGCATGAAAGAC  50

seq1  CTTCGCTGGAGGGGTGGAGATGATGGATGGGAGGGTGG  88
      ||||||||||||||||||||||||||||||||||||||
seq2  CTTCGCTGGAGGGGTGGAGATGATGGATGGGAGGGTGG  88

seq1: chr9_64502252_64503294
seq2: B6Ng01-058E07.g_69_1104 (reverse)

seq1  CATCAGAGGTTGAGAGAGTTAAAGTAGAAATATATGTACCTGGCTCTGCT  50
      ||||||||| ||||  |  ||||||||||   |||| |||| ||| ||||
seq2  CATCAGAGG-TGAGGAAAGTAAAGTAGAA--TTATGAACCT-GCT-TGCT  45

seq1  GAGTTCCAATGTATGTCCCAGTAATTGTGACCTG-AGATATGTGCATAAA  99
      ||||||||||  |||||||||||| ||||||||| ||| ||||||| |||
seq2  GAGTTCCAAT-AATGTCCCAGTAA-TGTGACCTGAAGAAATGTGCAAAAA  93

seq1  AGGT-CACAAGAGAGCACCATGTGGGGCAGGAAGGGCATCCTAGAAGAGG  148
      |||| ||||||||||||||||||||||||| |||||||| |||||||| |
seq2  AGGTCCACAAGAGAGCACCATGTGGGGCAGAAAGGGCAT-CTAGAAGAAG  142

seq1  TGGCCTTTTGCCTGAACTGAAGGACAGGGTGAGAGATC-TAAGGGTCCCA  197
        | |||||| ||||||||||||||||||||||||||| |||||||||||
seq2  ATGGCTTTTG-CTGAACTGAAGGACAGGGTGAGAGATCTTAAGGGTCCCA  191

seq1  AGTATGGGAACGAG-AAACTGGTTCACCTACTACATGGAAGACAGCATGG  246
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  AGTATGGGAACGAGAAAACTGGTTCA-CTACTACATGGAAGACAGCATGG  240

seq1  GGACACTCCATCCTTGCTGGGAAGCCAAGGACAGGAAGCAAGGAGGCTCC  296
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGACACTCCATCCTTGCT-GGAAGCCAAGGACAGGAAGCAAGGAGGCTCC  289

seq1  TGAGGTCCCCATTCAGGAAGAGTCTCCACCACAGAGATCCACTCAAGCCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCCCATTCAGGAAGAGTCTCCACCACAGAGATCCACTCAAGCCC  339

seq1  CAAATTAAAAGGCCATTGTTTCCCTCCCTTCCTCGGCAACCGCGCACTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAAAAGGCCATTGTTTCCCTCCCTTCCTCGGCAACCGCGCACTGC  389

seq1  ATAATTTATCTTTCTTCTGAAGGAGTCCTCCATGCATTATTAATCTGGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTATCTTTCTTCTGAAGGAGTCCTCCATGCATTATTAATCTGGAA  439

seq1  GGACTCCCTCTTCTCTGTCGCTAATCTCAGCCCATCCAATATTAATGATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCCTCTTCTCTGTCGCTAATCTCAGCCCATCCAATATTAATGATT  489

seq1  ATTTGCTTTATCGTCTTTAACGTGTGTCACGTTTTAAGGAACGGGGAGGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTTATCGTCTTTAACGTGTGTCACGTTTTAAGGAACGGGGAGGC  539

seq1  AAGCGCCATCCTTAGGCGTGGATCCTTGGATGGTGCCTGCCCAACCAGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCCATCCTTAGGCGTGGATCCTTGGATGGTGCCTGCCCAACCAGCT  589

seq1  CTGGGCAGTGCTCCAAAGCACTTCCTCCTTGGTGACTGCCTTGCCCCAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGTGCTCCAAAGCACTTCCTCCTTGGTGACTGCCTTGCCCCAAT  639

seq1  CCTGGACCCTCATGGGCACCAGCAGCCTGCCTCTAACCACTGTCTCGGCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACCCTCATGGGCACCAGCAGCCTGCCTCTAACCACTGTCTCGGCC  689

seq1  TTCAGTGACAGGCATGGCTGAGTTTATCTTAAGCAGTGCATCCTCCTAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGACAGGCATGGCTGAGTTTATCTTAAGCAGTGCATCCTCCTAGA  739

seq1  TCGTTCTGCCCCACTTGCTTTTTAAATATTCCCCGTTCTCCTGGTGTGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCTGCCCCACTTGCTTTTTAAATATTCCCCGTTCTCCTGGTGTGCC  789

seq1  AGCCTTATGACTGAGCCCCTGACACATGTGCTGCTCAGTCTGTATCAGGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTATGACTGAGCCCCTGACACATGTGCTGCTCAGTCTGTATCAGGC  839

seq1  AACCCACCTGGTTTGGTCATACAGAACAGTCTTGTGCTCTATAGACCATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACCTGGTTTGGTCATACAGAACAGTCTTGTGCTCTATAGACCATT  889

seq1  CAGCAGGGTCCCTGGCTCCCACCCATCAGATGCACAGCTCACTCCCAAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGTCCCTGGCTCCCACCCATCAGATGCACAGCTCACTCCCAAGT  939

seq1  TCTGACACCCAAAGATGATTCCAGTCAGTGCCAAATGTCCAGGTAGGATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACACCCAAAGATGATTCCAGTCAGTGCCAAATGTCCAGGTAGGATA  989

seq1  GAGAAAGCAAGATGTCTGAGGTGAGTACCTCTGGTCTAACTGAATTC  1043
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCAAGATGTCTGAGGTGAGTACCTCTGGTCTAACTGAATTC  1036