BAC Information

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BAC

Clone NameB6Ng01-059O09
Chromosome9 (Build37)
Map Location 36,600,248 - 36,752,127
singlet/doubletdoublet
Overlap geneEi24, LOC627681, Fez1, Pknox2
Upstream gene9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a
Downstream geneLOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059O09.bB6Ng01-059O09.g
ACCDH881041DH881042
length9301,131
definitionDH881041|Mus musculus domesticus DNA, BAC clone: B6Ng01-059O09, 5' end.DH881042|Mus musculus domesticus DNA, BAC clone: B6Ng01-059O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,751,200 - 36,752,127)(36,600,248 - 36,601,404)
sequence
gaattcaatgtcatagggaaataaggaatttttattgatggtaataataa
taataataataactattattattattattaaggagcgttggctgggcctg
gtggctcatgactttaaccccagcattcaggggactaagacgtgaatata
ctagagtttgaggcctgagctacatcataagttcaaagttagcctgggac
tcataacaaaaccttgtctcagtgactcagaagtgacatagagagcagac
agcatggccaagaagctattgaaacggcaatcagagggacagcagaaaac
actgtgtccctgtgtcatgtgacttgcttatagttttccctcacaaaact
agaaaggagccattggacattgagagcatgatgttgggctggagagatgg
cacagtggggtaaagtgtctgacgctcaagcccgagaacctgagttcagc
tgctcagaacccatgtgaaagttggtgtgtccgtgcgtgactgtaacacc
agcactgggcgagggtacagtgactggcaggtctctgagcttgctggcca
gccatcctagctgaaacagtgagtgctaagctcagcaaaagactgtgtgt
caaaaacagaggaagtccatctctgtcctccatgtgtgcattcaaaagag
ggaggaaggaagaaaaggaaggaaggaaggaaggaaggaaggaaggaagg
aaggaaggaaggaagaaaggaaggaaggaagttggttttgcattctgaaa
ataacaaggcatctctctcccctctctttctgagtctctattgaaattag
taacataggctcattttccagccaaatgagtcagcagacaggtgagacaa
attgtatggaagtggattgtttcattgttgctttgcctaaaggagtctat
taccttcaggggatgggagatataaatgaa
gaattccctgataagccaggcttgacaaataagccaacttcaggttcagt
gacagatactgcctcaaggcgagaaagcagacagaaacagaggtgataca
ggaagacacctaaagttctgctttggccttcccatgagaataggactgca
tctgcataaccacaagcacataccacgcaaatacacacagagggacacca
gacacaggctcacaattgaaattccaatatttgggaaagagaaacaggac
tgaaaggaactcaaaccagccaaggctgcgtaacaaaataaaaaagatgc
atgatagtatacattcctagtatttggcacacagaggcaggaaggagcat
caccaggagctcaaaatcagactgagatacatagcaagactgtctcaaaa
ataccaaaaattcctacttgctgagtgatgtagactaaactaaaaattga
cattctatgtaaaagacccaacaaatatataaaattacaaaagaaagatg
tcctagtctgtttctttaacaaaaaagcaaaaaagaaaaggttaagggac
aaattccttgaaacaaaatatactcaccctgccaaggtcctgcagaaagg
ttttgacactgtcagccatctctccactgcccagactatcaaatacagcg
agagggaagtgcccccaaaccattcatcatggagggcctagacagagatg
gaggaaaaagactaatgttaaagatccattacttcatgatgtttctacaa
aatgacacaacattctagtatccctaatacaagagtaatagactctgaca
ctaataacgtcaactaagaggctagacctttaactgctaaaattaagagt
ctgttttcttcagagatgagatactggaagttgttctggctagtcccaca
cttgctgaaactacaggaatgtttagataggggcaaatgtgctcctgaca
gtggtctccctgagctggatttccaaaccactctccaaacacttcacttt
gagaatctggatagaaatactcctcttagcatttttatactgcctacata
gtctccagcactgatgtggactgcaaagaatgctcaatgttagaagactg
ctactctcgaggacagatcgatcctcgattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_36751200_36752127
seq2: B6Ng01-059O09.b_49_977 (reverse)

seq1  TCATTTATATCTCCCATCCCCTGAAGGTATATAGACTCCTTTATGCAAAG  50
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  TCATTTATATCTCCCATCCCCTGAAGGTA-ATAGACTCCTTTAGGCAAAG  49

seq1  CAACAATGAAACCATCCACTTCCATAC-ATTTGTCTCCCCTGTCTGCTGA  99
      |||||||||||| |||||||||||||| ||||||||| ||||||||||||
seq2  CAACAATGAAACAATCCACTTCCATACAATTTGTCTCACCTGTCTGCTGA  99

seq1  CTCATTTGGCTGGAAAATGAGCCTATG-TACTAATTTCAATAGAGACTCA  148
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTCATTTGGCTGGAAAATGAGCCTATGTTACTAATTTCAATAGAGACTCA  149

seq1  GAAAGAGAGGGGAGAGAGATGCCTTGTTATTTTCAGAATGCAAAACCAAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGGGGAGAGAGATGCCTTGTTATTTTCAGAATGCAAAACCAAC  199

seq1  TTCCTTCCTTCCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  249

seq1  CCTTCCTTCCTTCCTTTTCTTCCTTCCTCCCTCTTTTGAATGCACACATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTCCTTTTCTTCCTTCCTCCCTCTTTTGAATGCACACATG  299

seq1  GAGGACAGAGATGGACTTCCTCTGTTTTTGACACACAGTCTTTTGCTGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGAGATGGACTTCCTCTGTTTTTGACACACAGTCTTTTGCTGAG  349

seq1  CTTAGCACTCACTGTTTCAGCTAGGATGGCTGGCCAGCAAGCTCAGAGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCACTCACTGTTTCAGCTAGGATGGCTGGCCAGCAAGCTCAGAGAC  399

seq1  CTGCCAGTCACTGTACCCTCGCCCAGTGCTGGTGTTACAGTCACGCACGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTCACTGTACCCTCGCCCAGTGCTGGTGTTACAGTCACGCACGG  449

seq1  ACACACCAACTTTCACATGGGTTCTGAGCAGCTGAACTCAGGTTCTCGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAACTTTCACATGGGTTCTGAGCAGCTGAACTCAGGTTCTCGGG  499

seq1  CTTGAGCGTCAGACACTTTACCCCACTGTGCCATCTCTCCAGCCCAACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCGTCAGACACTTTACCCCACTGTGCCATCTCTCCAGCCCAACAT  549

seq1  CATGCTCTCAATGTCCAATGGCTCCTTTCTAGTTTTGTGAGGGAAAACTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCTCAATGTCCAATGGCTCCTTTCTAGTTTTGTGAGGGAAAACTA  599

seq1  TAAGCAAGTCACATGACACAGGGACACAGTGTTTTCTGCTGTCCCTCTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAGTCACATGACACAGGGACACAGTGTTTTCTGCTGTCCCTCTGA  649

seq1  TTGCCGTTTCAATAGCTTCTTGGCCATGCTGTCTGCTCTCTATGTCACTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGTTTCAATAGCTTCTTGGCCATGCTGTCTGCTCTCTATGTCACTT  699

seq1  CTGAGTCACTGAGACAAGGTTTTGTTATGAGTCCCAGGCTAACTTTGAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCACTGAGACAAGGTTTTGTTATGAGTCCCAGGCTAACTTTGAAC  749

seq1  TTATGATGTAGCTCAGGCCTCAAACTCTAGTATATTCACGTCTTAGTCCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATGTAGCTCAGGCCTCAAACTCTAGTATATTCACGTCTTAGTCCC  799

seq1  CTGAATGCTGGGGTTAAAGTCATGAGCCACCAGGCCCAGCCAACGCTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGCTGGGGTTAAAGTCATGAGCCACCAGGCCCAGCCAACGCTCCT  849

seq1  TAATAATAATAATAATAGTTATTATTATTATTATTATTACCATCAATAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATAATAATAGTTATTATTATTATTATTATTACCATCAATAAA  899

seq1  AATTCCTTATTTCCCTATGACATTGAATTC  928
      ||||||||||||||||||||||||||||||
seq2  AATTCCTTATTTCCCTATGACATTGAATTC  929

seq1: chr9_36600248_36601404
seq2: B6Ng01-059O09.g_71_1201

seq1  GAATTCCCTGATAAGCCAGGCTTGACAAATAAGCCAACTTCAGGTTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGATAAGCCAGGCTTGACAAATAAGCCAACTTCAGGTTCAGT  50

seq1  GACAGATACTGCCTCAAGGCGAGAAAGCAGACAGAAACAGAGGTGATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATACTGCCTCAAGGCGAGAAAGCAGACAGAAACAGAGGTGATACA  100

seq1  GGAAGACACCTAAAGTTCTGCTTTGGCCTTCCCATGAGAATAGGACTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACACCTAAAGTTCTGCTTTGGCCTTCCCATGAGAATAGGACTGCA  150

seq1  TCTGCATAACCACAAGCACATACCACGCAAATACACACAGAGGGACACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATAACCACAAGCACATACCACGCAAATACACACAGAGGGACACCA  200

seq1  GACACAGGCTCACAATTGAAATTCCAATATTTGGGAAAGAGAAACAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGCTCACAATTGAAATTCCAATATTTGGGAAAGAGAAACAGGAC  250

seq1  TGAAAGGAACTCAAACCAGCCAAGGCTGCGTAACAAAATAAAAAAGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAACTCAAACCAGCCAAGGCTGCGTAACAAAATAAAAAAGATGC  300

seq1  ATGATAGTATACATTCCTAGTATTTGGCACACAGAGGCAGGAAGGAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGTATACATTCCTAGTATTTGGCACACAGAGGCAGGAAGGAGCAT  350

seq1  CACCAGGAGCTCAAAATCAGACTGAGATACATAGCAAGACTGTCTCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGAGCTCAAAATCAGACTGAGATACATAGCAAGACTGTCTCAAAA  400

seq1  ATACCAAAAATTCCTACTTGCTGAGTGATGTAGACTAAACTAAAAATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAAAATTCCTACTTGCTGAGTGATGTAGACTAAACTAAAAATTGA  450

seq1  CATTCTATGTAAAAGACCCAACAAATATATAAAATTACAAAAGAAAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTATGTAAAAGACCCAACAAATATATAAAATTACAAAAGAAAGATG  500

seq1  TCCTAGTCTGTTTCTTTAACAAAAAAGCAAAAAAGAAAAGGTTAAGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTCTGTTTCTTTAACAAAAAAGCAAAAAAGAAAAGGTTAAGGGAC  550

seq1  AAATTCCTTGAAACAAAATATACTCACCCTGCCAAGGTCCTGCAGAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTTGAAACAAAATATACTCACCCTGCCAAGGTCCTGCAGAAAGG  600

seq1  TTTTGACACTGTCAGCCATCTCTCCACTGCCCAGACTATCAAATACAGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACACTGTCAGCCATCTCTCCACTGCCCAGACTATCAAATACAGCG  650

seq1  AGAGGGAAGTGCCCCCAAACCATTCATCATGGAGGGCCTAGACAGAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAGTGCCCCCAAACCATTCATCATGGAGGGCCTAGACAGAGATG  700

seq1  GAGGAAAAAGACTAATGTTAAAGATCCATTACTTCATGATGTTTCTACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAAGACTAATGTTAAAGATCCATTACTTCATGATGTTTCTACAA  750

seq1  AATGACACAACATTCTAGTATCCCTAATACAAGAGTAATAGACTCTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACAACATTCTAGTATCCCTAATACAAGAGTAATAGACTCTGACA  800

seq1  CTAATAACGTCAACTAAGAGGCTAGACCTTTAACTGCTAAAATTAAGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAACGTCAACTAAGAGGCTAGACCTTTAACTGCTAAAATTAAGAGT  850

seq1  CTGTTTTCTTCAGAGATGAGATACTGGAAGTTGTTCTGGCTAGTCCCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCTTCAGAGATGAGATACTGGAAGTTGTTCTGGCTAGTCCCACA  900

seq1  CTTGCTGAAACTACAGGAATGTTTAGATAAGGGGCAAAATGTGCTCCTGG  950
      |||||||||||||||||||||||||||| |||||| |||||||||||| |
seq2  CTTGCTGAAACTACAGGAATGTTTAGAT-AGGGGC-AAATGTGCTCCT-G  947

seq1  ACAAGTGGTCTCCCCTGAGCCTTGAATTTCCAAACCACTCCTCCCAAACA  1000
      || |||||||| ||||||||  || |||||||||||||||   |||||||
seq2  AC-AGTGGTCT-CCCTGAGC--TGGATTTCCAAACCACTC--TCCAAACA  991

seq1  CTTTCACTTTTGAGAATCTGGATAGAAATACT-CTCTTAAGCAATTTTTA  1049
      | ||||| |||||||||||||||||||||||| ||||| ||| |||||||
seq2  C-TTCAC-TTTGAGAATCTGGATAGAAATACTCCTCTT-AGC-ATTTTTA  1037

seq1  TACTGGCTACATAGTCTCCAGCACTTGAATGTGAGACTGGAAAAGATGGC  1099
      ||||| |||||||||||||||||||   ||||| |||| | |||||  ||
seq2  TACTGCCTACATAGTCTCCAGCACT--GATGTG-GACT-GCAAAGAATGC  1083

seq1  TCAGTGGTTAAGAGAACTGGCTACTCTTTCAGAGGACCAGAGATCGATTC  1149
      ||| ||  | |||  ||| ||||||||    ||||||   ||||||| ||
seq2  TCAATG--TTAGAAGACT-GCTACTCT---CGAGGAC---AGATCGA-TC  1123

seq1  CTCGATTC  1157
      ||||||||
seq2  CTCGATTC  1131