BAC Information

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BAC

Clone NameB6Ng01-061J19
Chromosome9 (Build37)
Map Location 49,448,145 - 49,579,514
singlet/doubletdoublet
Overlap geneNcam1
Upstream geneZbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12
Downstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061J19.bB6Ng01-061J19.g
ACCDH882240DH882241
length1,130178
definitionDH882240|Mus musculus domesticus DNA, BAC clone: B6Ng01-061J19, 5' end.DH882241|Mus musculus domesticus DNA, BAC clone: B6Ng01-061J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,448,145 - 49,449,277)(49,579,337 - 49,579,514)
sequence
gaattcattgtggtctatcaattataccgacttttgcacatattctcaca
aaaaaggaactccccagacccatacaaaatgcaagaaaccccacttttca
gtcaactcattacagatcttcaagaactagctggccccgaggttcctggc
atacattctgactgttaaatcgaattgcaagtattaaatcaacttgtctc
cagggcactgcaggtggacccggcaggctgcacaatgcaatgcatcgctg
gtttctctcaaagagaacagaggactatatacaaaagcacaggaaaggac
agtcgtttccaagcagcgcttcaaggttcaaggtaccagtggatgtcgac
tcacatgcctgaagaggccgaagggcaggtttgacaacttcccagggcat
ggcacatactacacaatggcctcagcttcatcttgccctggattacaggg
gctctaatcaggtaaacccctggtcccaaggtcccaagaagtatattctc
aatgccttgagactctcttattgacaaaaatgtgctttaaaaagtcataa
aatggttattgctctctgatacaatatgccaagctcatctaccctctgcc
tctggatcttctgcagaacatgcgggctgggggtgctgagggctggccat
gctgactataacagccccatctacaaaagcttcctacaccctccctcact
tcctcagttcctacctgtgtcactgttctcatgtacccacagggattctg
ggaaagtagttttgaccacccaatcttccagctcatgaaggacacagtct
ttgtcaaagttggatagttatgaagcccaggccatggtctccactgcaat
tccacctgtccccatagggaactggtaaggaaaaggcagacgccatctgc
cctggaggatgcacctggtgcttgtctcttctcagtgcggattactgcag
caagcaagcttccttctaaacaacacagtggcaggatgtaaattggtggc
taatcctcaaatctcatcatctacatgagatgacatgctcagaaaaaata
cttgcaattgaatgcgagaaggaaagcagtcccagtgggaggtgactgga
ctgaggggagaattgctttctgctgaaatg
ctttttttttttcgattggaaaaagaggttagtcttccctagggaaaatt
gtgcatcttaatatccatcctgacacattacggttccaattcagtgtgtg
ctttggtatcccagttctctctctctctctctctctctctctctctctct
ctctctctctttctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_49448145_49449277
seq2: B6Ng01-061J19.b_49_1178

seq1  GAATTCATTGTGGTCTATCAATTATACCGACTTTTGCACATATTCTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGGTCTATCAATTATACCGACTTTTGCACATATTCTCACA  50

seq1  AAAAAGGAACTCCCCAGACCCATACAAAATGCAAGAAACCCCACTTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAACTCCCCAGACCCATACAAAATGCAAGAAACCCCACTTTTCA  100

seq1  GTCAACTCATTACAGATCTTCAAGAACTAGCTGGCCCCGAGGTTCCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTCATTACAGATCTTCAAGAACTAGCTGGCCCCGAGGTTCCTGGC  150

seq1  ATACATTCTGACTGTTAAATCGAATTGCAAGTATTAAATCAACTTGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTCTGACTGTTAAATCGAATTGCAAGTATTAAATCAACTTGTCTC  200

seq1  CAGGGCACTGCAGGTGGACCCGGCAGGCTGCACAATGCAATGCATCGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCACTGCAGGTGGACCCGGCAGGCTGCACAATGCAATGCATCGCTG  250

seq1  GTTTCTCTCAAAGAGAACAGAGGACTATATACAAAAGCACAGGAAAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTCAAAGAGAACAGAGGACTATATACAAAAGCACAGGAAAGGAC  300

seq1  AGTCGTTTCCAAGCAGCGCTTCAAGGTTCAAGGTACCAGTGGATGTCGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTTTCCAAGCAGCGCTTCAAGGTTCAAGGTACCAGTGGATGTCGAC  350

seq1  TCACATGCCTGAAGAGGCCGAAGGGCAGGTTTGACAACTTCCCAGGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGCCTGAAGAGGCCGAAGGGCAGGTTTGACAACTTCCCAGGGCAT  400

seq1  GGCACATACTACACAATGGCCTCAGCTTCATCTTGCCCTGGATTACAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATACTACACAATGGCCTCAGCTTCATCTTGCCCTGGATTACAGGG  450

seq1  GCTCTAATCAGGTAAACCCCTGGTCCCAAGGTCCCAAGAAGTATATTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAATCAGGTAAACCCCTGGTCCCAAGGTCCCAAGAAGTATATTCTC  500

seq1  AATGCCTTGAGACTCTCTTATTGACAAAAATGTGCTTTAAAAAGTCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTGAGACTCTCTTATTGACAAAAATGTGCTTTAAAAAGTCATAA  550

seq1  AATGGTTATTGCTCTCTGATACAATATGCCAAGCTCATCTACCCTCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTATTGCTCTCTGATACAATATGCCAAGCTCATCTACCCTCTGCC  600

seq1  TCTGGATCTTCTGCAGAACATGCGGGCTGGGGGTGCTGAGGGCTGGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATCTTCTGCAGAACATGCGGGCTGGGGGTGCTGAGGGCTGGCCAT  650

seq1  GCTGACTATAACAGCCCCATCTACAAAAGCTTCCTACACCCTCCCTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTATAACAGCCCCATCTACAAAAGCTTCCTACACCCTCCCTCACT  700

seq1  TCCTCAGTTCCTACCTGTGTCACTGTTCTCATGTACCCACAGGGATTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGTTCCTACCTGTGTCACTGTTCTCATGTACCCACAGGGATTCTG  750

seq1  GGAAAGTAGTTTTGACCACCCAATCTTCCAGCTCATGAAGGACACAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTAGTTTTGACCACCCAATCTTCCAGCTCATGAAGGACACAGTCT  800

seq1  TTGTCAAAGTTGGATAGTTATGAAGCCCAGGCCATGGTCTCCACTGCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAAGTTGGATAGTTATGAAGCCCAGGCCATGGTCTCCACTGCAAT  850

seq1  TCCACCTGTCCCCATAGGGAACTGGTAAGGAAAAGGCAGACGCCATCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGTCCCCATAGGGAACTGGTAAGGAAAAGGCAGACGCCATCTGC  900

seq1  CCTGGAGGATGCACCTGGTGCTTGTCTCTTCTCAGTGCGGATTACTGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGATGCACCTGGTGCTTGTCTCTTCTCAGTGCGGATTACTGCAG  950

seq1  CAAAGCAAGC-TCCTTCTAAACAACACAGTGGCAGGATGTAAATTGGTGG  999
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  C-AAGCAAGCTTCCTTCTAAACAACACAGTGGCAGGATGTAAATTGGTGG  999

seq1  CTAATCCTCAAATCTCATCATCTACATGAGATGACATGCCTCAG-AAAAA  1048
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  CTAATCCTCAAATCTCATCATCTACATGAGATGACATG-CTCAGAAAAAA  1048

seq1  TACTTGCAATTGATTGCGAGAAAGGACAGCAGTCCCAGTGTGAGGGTGAC  1098
      ||||||||||||| |||||| ||||| ||||||||||||| || ||||||
seq2  TACTTGCAATTGAATGCGAG-AAGGAAAGCAGTCCCAGTGGGA-GGTGAC  1096

seq1  TGGGACTGAGGGGAG-ACTGCTTTCTGCCTGAAATG  1133
      | ||||||||||||| | ||||||||| ||||||||
seq2  T-GGACTGAGGGGAGAATTGCTTTCTG-CTGAAATG  1130

seq1: chr9_49579337_49579514
seq2: B6Ng01-061J19.g_75_252 (reverse)

seq1  AGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAACTGGGATACCAAAGCACACACTGAATTGGAACCGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAACTGGGATACCAAAGCACACACTGAATTGGAACCGTA  100

seq1  ATGTGTCAGGATGGATATTAAGATGCACAATTTTCCCTAGGGAAGACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCAGGATGGATATTAAGATGCACAATTTTCCCTAGGGAAGACTAA  150

seq1  CCTCTTTTTCCAATCGAAAAAAAAAAAG  178
      ||||||||||||||||||||||||||||
seq2  CCTCTTTTTCCAATCGAAAAAAAAAAAG  178