BAC Information

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BAC

Clone NameB6Ng01-061J24
Chromosome9 (Build37)
Map Location 109,690,569 - 109,863,196
singlet/doubletdoublet
Overlap gene1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4
Upstream geneIhpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109
Downstream geneLOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061J24.bB6Ng01-061J24.g
ACCDH882248DH882249
length998527
definitionDH882248|Mus musculus domesticus DNA, BAC clone: B6Ng01-061J24, 5' end.DH882249|Mus musculus domesticus DNA, BAC clone: B6Ng01-061J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,862,192 - 109,863,196)(109,690,569 - 109,691,101)
sequence
gaattctcttgcctcaatttaaaaattagaagttcaggccccgagcgtgg
tggtgcacgcctttaataccagcactcgggaggcagaggcaggtggattt
ctgagttcgaggccagcctggtctacaaagtgagttccaggacaaccagg
gctatacagagaaaccctgtctcgaaaaacaaaaacaaaaacaaaaaaaa
gttcaaaacatgaatatggatctcactttaacaataatacattcatcttg
agaaatatctgctttctatttatatataatgccatcagcatcatctctaa
ttacagtcagctttacctccattcattttaactgccactatgttttatga
gtttaaagactcttgtactagccagatacactgctgcatatgagcaggaa
gattgagctcagttacatagtggagtctgagggtaaccagggctatatga
gaccatatctcaaagtttcaggaggggtagacaaactgaaaagatggttg
tgtcagtaaagagcttgttgtgcaagcattaacagcctgagttcaatccc
caggccccgtataaaaaggctgagcacagtgtaatctagtgtaatctagc
actagggaagcagaatcaaacaagtcctcaagttcattaactaatcagcc
taggaaagccatcagagaccctggctcaaaaacacagaaacaaaaaaaca
cggtgtgctttgacctctggcccctacacacactctacaaatgaaacaca
aacaaaaaaggcaaaatggtttgtttaaccacgggggagggggggacgac
ttggtattttcttctactggtgacaagaaaggctgccttttgggaacctg
aataggaggacaggacagcctgaattccagagtgagatctgttggagaag
gaagacagtcaagaaaggagaaaactctgttctgatacatctgtcttttt
tgtttggttttgcttttagacagtgtttttctgtaaacactggctgtc
accatacagacaacagacttgtcttgtccctttcttgttatgccacaccc
tgagatataacatgcatagccacaaggtcctgcaaggaaaccccaacaat
atatgggcagcagacagttgagggacaactcaacctgaaggaggtatggt
tcatttccctctactttgtagaaggcttgggaaaagctgtggaaaggatg
aagtgagaggcaatcaagcacactgcaggctggacattagttcagaaaca
tttactctttaatatgtttttatagatacaaaatgggtctggggcctgga
gctgtgactcctgggcagagttctcggttgtattctgaaaggccaataag
ctggaactcactactaatttggaggcagaaaagtccgaagtgcattggtg
tgtgttacatgaagggtttgaggtctactggtagtacatgagatcctgtc
gaaagaaagaaagaaagaaagagagagagagagagagagagagagagaga
gagagaggaaggaaggaaggaaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109862192_109863196
seq2: B6Ng01-061J24.b_47_1044 (reverse)

seq1  GACAGCCAGTGCTATACAGAAAAACACTGTCTCAAAAGCAAAACCAAAAC  50
      ||||||||||| | |||||||||||||||||| |||||||||||| ||||
seq2  GACAGCCAGTG-TTTACAGAAAAACACTGTCT-AAAAGCAAAACC-AAAC  47

seq1  AAAAAAGACAGATGTATCAGAACAGAGTTTTCCTCCTTTCTTTGACTGTC  100
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  AAAAAAGACAGATGTATCAGAACAGAGTTTT-CTCCTTTC-TTGACTGTC  95

seq1  TTTCCTTCTCCAACAGATCTCACTCTGGAATTCAGGCTGTCCTGTCCTCC  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTCCTTCTCCAACAGATCTCACTCTGGAATTCAGGCTGTCCTGTCCTCC  144

seq1  TATTTCAGGTTCCCAAAAGGCAGCCTTTCTTGTCACCAGTAGAAGAAAAT  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TTCAGGTTCCCAAAAGGCAGCCTTTCTTGTCACCAGTAGAAGAAAAT  193

seq1  ACCAAGTCGTCCCCCCCTCCCCCGTGGTTAAACAAACCATTTTGCCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTCGTCCCCCCCTCCCCCGTGGTTAAACAAACCATTTTGCCTTTT  243

seq1  TTGTTTGTGTTTCATTTGTAGAGTGTGTGTAGGGGCCAGAGGTCAAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTGTTTCATTTGTAGAGTGTGTGTAGGGGCCAGAGGTCAAAGCA  293

seq1  CACCGTGTTTTTTTGTTTCTGTGTTTTTGAGCCAGGGTCTCTGATGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTGTTTTTTTGTTTCTGTGTTTTTGAGCCAGGGTCTCTGATGGCTT  343

seq1  TCCTAGGCTGATTAGTTAATGAACTTGAGGACTTGTTTGATTCTGCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGCTGATTAGTTAATGAACTTGAGGACTTGTTTGATTCTGCTTCC  393

seq1  CTAGTGCTAGATTACACTAGATTACACTGTGCTCAGCCTTTTTATACGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCTAGATTACACTAGATTACACTGTGCTCAGCCTTTTTATACGGG  443

seq1  GCCTGGGGATTGAACTCAGGCTGTTAATGCTTGCACAACAAGCTCTTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGGATTGAACTCAGGCTGTTAATGCTTGCACAACAAGCTCTTTAC  493

seq1  TGACACAACCATCTTTTCAGTTTGTCTACCCCTCCTGAAACTTTGAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAACCATCTTTTCAGTTTGTCTACCCCTCCTGAAACTTTGAGATA  543

seq1  TGGTCTCATATAGCCCTGGTTACCCTCAGACTCCACTATGTAACTGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCATATAGCCCTGGTTACCCTCAGACTCCACTATGTAACTGAGCT  593

seq1  CAATCTTCCTGCTCATATGCAGCAGTGTATCTGGCTAGTACAAGAGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTCCTGCTCATATGCAGCAGTGTATCTGGCTAGTACAAGAGTCTT  643

seq1  TAAACTCATAAAACATAGTGGCAGTTAAAATGAATGGAGGTAAAGCTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCATAAAACATAGTGGCAGTTAAAATGAATGGAGGTAAAGCTGAC  693

seq1  TGTAATTAGAGATGATGCTGATGGCATTATATATAAATAGAAAGCAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTAGAGATGATGCTGATGGCATTATATATAAATAGAAAGCAGATA  743

seq1  TTTCTCAAGATGAATGTATTATTGTTAAAGTGAGATCCATATTCATGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAAGATGAATGTATTATTGTTAAAGTGAGATCCATATTCATGTTT  793

seq1  TGAACTTTTTTTTGTTTTTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTTTTTTGTTTTTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGT  843

seq1  ATAGCCCTGGTTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTGGTTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAA  893

seq1  CTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGTATTAAAGGCGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGTATTAAAGGCGTG  943

seq1  CACCACCACGCTCGGGGCCTGAACTTCTAATTTTTAAATTGAGGCAAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCACGCTCGGGGCCTGAACTTCTAATTTTTAAATTGAGGCAAGAG  993

seq1  AATTC  1005
      |||||
seq2  AATTC  998

seq1: chr9_109690569_109691101
seq2: B6Ng01-061J24.g_69_601

seq1  GAATTCACCATACAGACAACAGACTTGTCTTGTCCCTTTCTTGTTATGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATACAGACAACAGACTTGTCTTGTCCCTTTCTTGTTATGCC  50

seq1  ACACCCTGAGATATAACATGCATAGCCACAAGGTCCTGCAAGGAAACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTGAGATATAACATGCATAGCCACAAGGTCCTGCAAGGAAACCCC  100

seq1  AACAATATATGGGCAGCAGACAGTTGAGGGACAACTCAACCTGAAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATATGGGCAGCAGACAGTTGAGGGACAACTCAACCTGAAGGAGG  150

seq1  TATGGTTCATTTCCCTCTACTTTGTAGAAGGCTTGGGAAAAGCTGTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTCATTTCCCTCTACTTTGTAGAAGGCTTGGGAAAAGCTGTGGAA  200

seq1  AGGATGAAGTGAGAGGCAATCAAGCACACTGCAGGCTGGACATTAGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAAGTGAGAGGCAATCAAGCACACTGCAGGCTGGACATTAGTTCA  250

seq1  GAAACATTTACTCTTTAATATGTTTTTATAGATACAAAATGGGTCTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTTACTCTTTAATATGTTTTTATAGATACAAAATGGGTCTGGGG  300

seq1  CCTGGAGCTGTGACTCCTGGGCAGAGTTCTCGGTTGTATTCTGAAAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGCTGTGACTCCTGGGCAGAGTTCTCGGTTGTATTCTGAAAGGCC  350

seq1  AATAAGCTGGAACTCACTACTAATTTGGAGGCAGAAAAGTCCGAAGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCTGGAACTCACTACTAATTTGGAGGCAGAAAAGTCCGAAGTGCA  400

seq1  TTGGTGTGTGTTACATGAAGGGTTTGAGGTCTACTGGTAGTACATGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTGTGTTACATGAAGGGTTTGAGGTCTACTGGTAGTACATGAGAT  450

seq1  CCTGTCGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGA  500

seq1  GAGAGAGAGAGAGGAAGGAAGGAAGGAAGGAAG  533
      |||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGGAAGGAAGGAAGGAAGGAAG  533