BAC Information

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BAC

Clone NameB6Ng01-064B19
Chromosome9 (Build37)
Map Location 54,371,195 - 54,372,307
singlet/doubletsinglet
Overlap genenone
Upstream geneNpat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2
Downstream gene4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064B19.bB6Ng01-064B19.g
ACCDH883999DH884000
length1,1301,102
definitionDH883999|Mus musculus domesticus DNA, BAC clone: B6Ng01-064B19, 5' end.DH884000|Mus musculus domesticus DNA, BAC clone: B6Ng01-064B19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccat
ggaggagctagagaaagtagcaggagctaaagggatctgcaaccctataa
ggtggacacatatgagttacagtaccccgagctcctgactctagctgcat
taatttcaaaagatggcctatcggccatcacttgaaagagaagcccattg
gactgtccaaccttatatggcgccagatac
gaattcttcatagattgatcaaaaagattgattgctttctgcaaacagcc
tggttgagtttagaaggaaaattcacaccaaacccacaatgaactgttta
tttgtttatttgggacaaggccctaaatagatcagactggtctcaaactc
atcaatatccacttgcttctgcccctaagttctgggattaaaggtgtgta
ccccgaatactttatccattcgtttataatgacaaactagatgcatcagt
gtgattttccttccacatacaactcagaagactaattatccatgaagata
gtttgacgatcactgttccctcccgtggaactgctgtatcctattcctaa
atggttgacagctttagacatgccagtagaaccttgtttgccagagacca
caaaataagctaggttcgaaagagatcctcacagggtttctctaactgtg
ctaacagcaagagatgagctgaacatagaagatgaactattagagcaagg
ggaaggaactcagggaatagcagaaagagaggaaggcaaagtaggacaga
agagaaggggacgtgaccagaacagaacacattgaagacccgagaagaaa
gcctcttcaggtgccttgtgagtggctggcacaggcaccacttctgcatg
ctttgtacacattctctacggtccaccatgctctttcacagtctttccag
ctttcaagatcattgcctcttcaacttctaagtcttttatctcaggaaag
cccagaatcacacagcgtttttacaagagaaatcagttgttggacagaag
atctgctcttactttgggaggtttataagcagttatcacactagtctgga
agagttcaaccctggagaaatctattagtaaaagagtaagacaggtcact
aaagactcacagtccctgaatatcactttgtagtagtctccagaattctg
gattttagaatattaattggaaacatagtgctaaattaataagaaagagt
gagagaagagaaaatataaagctgctactttaacttgccagaagaatgtt
ataatacctttatttaaggtattgttccatagtactttcccttcccggaa
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_54371195_54372307
seq2: B6Ng01-064B19.g_69_1170 (reverse)

seq1  GCTTTCGGGAAGGGAAATGTAACTATGGGAACAATAGCTATAAATAAGAG  50
      |||| |||||||||||| || ||||| ||||||||| || ||||||| ||
seq2  GCTTCCGGGAAGGGAAA-GT-ACTAT-GGAACAATACCT-TAAATAA-AG  45

seq1  TAATCATAACATTCTTTCTGGGCAAGTTAAAAGTTAGCAGCTCTATATTT  100
        || ||||||||| |||| |||||||||||   |||||||| |||| ||
seq2  GTATTATAACATTC-TTCT-GGCAAGTTAAA--GTAGCAGCTTTATA-TT  90

seq1  TTCTCTTCTCTCCACTCTTTC-TATTAATTTAGCAACTTATGTTTCCAAT  149
      ||||||||||| ||||||||| |||||||||||||   ||||||||||||
seq2  TTCTCTTCTCT-CACTCTTTCTTATTAATTTAGCA--CTATGTTTCCAAT  137

seq1  T-ATATTCTAAAATCCAGAATTCTGGAGACTACTACAAAGTGATATTCAG  198
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCTAAAATCCAGAATTCTGGAGACTACTACAAAGTGATATTCAG  187

seq1  GGACTGTGAGTCTTTAGTGACCTGTCTTACTCCTTTACTAATAGATCTCT  248
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  GGACTGTGAGTCTTTAGTGACCTGTCTTACTCTTTTACTAATAGATTTCT  237

seq1  CCAGGGTTGAACTCTTCCAGACTAGTGTGATAACTGCTTATAAACCTCCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTTGAACTCTTCCAGACTAGTGTGATAACTGCTTATAAACCTCCC  287

seq1  AAAGTAAGAGCAGATCTTCTGTCCAACAACTGATTTCTCTTGTAAAAACG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAGAGCAGATCTTCTGTCCAACAACTGATTTCTCTTGTAAAAACG  337

seq1  CTGTGTGATTCTGGGCTTTCCTGAGATAAAAGACTTAGAAGTTGAAGAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGATTCTGGGCTTTCCTGAGATAAAAGACTTAGAAGTTGAAGAGG  387

seq1  CAATGATCTTGAAAGCTGGAAAGACTGTGAAAGAGCATGGTGGACCGTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATCTTGAAAGCTGGAAAGACTGTGAAAGAGCATGGTGGACCGTAG  437

seq1  AGAATGTGTACAAAGCATGCAGAAGTGGTGCCTGTGCCAGCCACTCACAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTGTACAAAGCATGCAGAAGTGGTGCCTGTGCCAGCCACTCACAA  487

seq1  GGCACCTGAAGAGGCTTTCTTCTCGGGTCTTCAATGTGTTCTGTTCTGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTGAAGAGGCTTTCTTCTCGGGTCTTCAATGTGTTCTGTTCTGGT  537

seq1  CACGTCCCCTTCTCTTCTGTCCTACTTTGCCTTCCTCTCTTTCTGCTATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCCCCTTCTCTTCTGTCCTACTTTGCCTTCCTCTCTTTCTGCTATT  587

seq1  CCCTGAGTTCCTTCCCCTTGCTCTAATAGTTCATCTTCTATGTTCAGCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTTCCTTCCCCTTGCTCTAATAGTTCATCTTCTATGTTCAGCTC  637

seq1  ATCTCTTGCTGTTAGCACAGTTAGAGAAACCCTGTGAGGATCTCTTTCGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGCTGTTAGCACAGTTAGAGAAACCCTGTGAGGATCTCTTTCGA  687

seq1  ACCTAGCTTATTTTGTGGTCTCTGGCAAACAAGGTTCTACTGGCATGTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCTTATTTTGTGGTCTCTGGCAAACAAGGTTCTACTGGCATGTCT  737

seq1  AAAGCTGTCAACCATTTAGGAATAGGATACAGCAGTTCCACGGGAGGGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTCAACCATTTAGGAATAGGATACAGCAGTTCCACGGGAGGGAA  787

seq1  CAGTGATCGTCAAACTATCTTCATGGATAATTAGTCTTCTGAGTTGTATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATCGTCAAACTATCTTCATGGATAATTAGTCTTCTGAGTTGTATG  837

seq1  TGGAAGGAAAATCACACTGATGCATCTAGTTTGTCATTATAAACGAATGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAAAATCACACTGATGCATCTAGTTTGTCATTATAAACGAATGG  887

seq1  ATAAAGTATTCGGGGTACACACCTTTAATCCCAGAACTTAGGGGCAGAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTATTCGGGGTACACACCTTTAATCCCAGAACTTAGGGGCAGAAG  937

seq1  CAAGTGGATATTGATGAGTTTGAGACCAGTCTGATCTATTTAGGGCCTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGATATTGATGAGTTTGAGACCAGTCTGATCTATTTAGGGCCTTG  987

seq1  TCCCAAATAAACAAATAAACAGTTCATTGTGGGTTTGGTGTGAATTTTCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATAAACAAATAAACAGTTCATTGTGGGTTTGGTGTGAATTTTCC  1037

seq1  TTCTAAACTCAACCAGGCTGTTTGCAGAAAGCAATCAATCTTTTTGATCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAACTCAACCAGGCTGTTTGCAGAAAGCAATCAATCTTTTTGATCA  1087

seq1  ATCTATGAAGAATTC  1113
      |||||||||||||||
seq2  ATCTATGAAGAATTC  1102