BAC Information

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BAC

Clone NameB6Ng01-066B19
Chromosome9 (Build37)
Map Location 118,981,454 - 119,139,910
singlet/doubletdoublet
Overlap genePlcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik
Upstream gene2010110K16Rik, Eomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill
Downstream geneOxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066B19.bB6Ng01-066B19.g
ACCDH885379DH885380
length8221,086
definitionDH885379|Mus musculus domesticus DNA, BAC clone: B6Ng01-066B19, 5' end.DH885380|Mus musculus domesticus DNA, BAC clone: B6Ng01-066B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,981,454 - 118,982,272)(119,138,733 - 119,139,910)
sequence
gaattcttattcttattgaccttcggcagctgctgtccagagatgatctg
aggaaaggcggagacaatgagcgttcaaggacatcaatgagcaggaaggg
acttccacaggctgccatgccccctgtatcaggccatacccagactcgga
gcttcttcggggcccaccagggcccctgagtcagggcccgtgagttgaag
gtggtgtcagggtctctcaggaaggccggtttcagcacatacccacaacc
tccattgtcctggaagcagccaaggtaaacatccatttctggcccagggg
tttggaagttcagagccactacaggtggaacagagcagtcatcaactgtg
ggttggccccagagtcctagagcctagcctcctactcagagtgcactagc
atctgggttcccatgtgagttagagcaggatccaatggtccagtgtctcc
tgccttccagcatcctagctgacccaccacactgaccacattctttgtgt
gtgtgtgtgtggtgttgtgtataatataggtgtgtcacgagagtgtgtgc
acatgcatatttgcatatacttgcggaggccaaaggcctggcatcttttt
tgcgacagggctcctattgaatcctctgggctggctggctggccagtgag
tggagctcagcttctctctgcctcagtagtgctgattacagattgcctgt
catcaaccctgtgctttcatgtggggccggggtcccaagcaggacctcct
gcttctatggcagacatttttgctgactgagtcatctccccaatctcttt
tctggggggtttgagacagggt
gaattccctatggtgctgagaattgccttgatacacaatgtaggaaccaa
gggaattcgatgataaagttggccctggctgttagacccagtcttacata
tcttgctttcctttcagtttgacctggtgtgtgattgaaagaacctgaag
aggacctctcagtcggtgttcatggctggacttcttgttggagccctggt
ctttgggcctgtctgtgactggtatgtgctgctggtccggcgtgctttta
ggcttctggtgcttgctcagttaccccctccccaccccccagagctatac
cagtagccattaagataagtcctattgcctacctaccagggaaaacccta
tctccccactctgacagagggccagaataggcttgccgggggctctcttg
attcagtcctgggccagcctcttcacttcaaatcctgtccccctgttacc
tcaggattggccgaagagccagccttctgctgcagctgcttctgtcaggt
accataggtgtggccacagcctttgtgcccagctttgagctctacatggt
tctgtgcttcttctcagctgttgctgttgcaggatccataatgagcacca
tgattctgggtgagtgtctgagccctggagccacttggacagtctgaaac
ctgaactcttcgagagcccctgaatggcctgtggggttagtttcagacat
ctctacctatcatatgtcatagcagagctttctatgctgtgaatgaggca
cagtgctacggactggcctcagtcagccccctcaatccgagggagaattc
agggtcctggtacaggtgggcaggagtctcagaagaactctaaagatgag
tggaaatacaacaattactaaataataataatgatgatgccaataataat
aacaagcaagattaaatattgaacccaatccaagtgattcatgcccttag
gttattttttaaatctctggataattcatcaatgttcccagtatccgaaa
ggcttttgtaattatctgaaatttctgctttactgttcatgtcaggtgaa
atatcagtatctctccacactcctggaaaatgaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_118981454_118982272
seq2: B6Ng01-066B19.b_43_864

seq1  GAATTCTTATTCTTATTGACCTTCGGCAGCTGCTGTCCAGAGATGATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTCTTATTGACCTTCGGCAGCTGCTGTCCAGAGATGATCTG  50

seq1  AGGAAAGGCGGAGACAATGAGCGTTCAAGGACATCAATGAGCAGGAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGCGGAGACAATGAGCGTTCAAGGACATCAATGAGCAGGAAGGG  100

seq1  ACTTCCACAGGCTGCCATGCCCCCTGTATCAGGCCATACCCAGACTCGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACAGGCTGCCATGCCCCCTGTATCAGGCCATACCCAGACTCGGA  150

seq1  GCTTCTTCGGGGCCCACCAGGGCCCCTGAGTCAGGGCCCGTGAGTTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTCGGGGCCCACCAGGGCCCCTGAGTCAGGGCCCGTGAGTTGAAG  200

seq1  GTGGTGTCAGGGTCTCTCAGGAAGGCCGGTTTCAGCACATACCCACAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTCAGGGTCTCTCAGGAAGGCCGGTTTCAGCACATACCCACAACC  250

seq1  TCCATTGTCCTGGAAGCAGCCAAGGTAAACATCCATTTCTGGCCCAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTCCTGGAAGCAGCCAAGGTAAACATCCATTTCTGGCCCAGGGG  300

seq1  TTTGGAAGTTCAGAGCCACTACAGGTGGAACAGAGCAGTCATCAACTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGTTCAGAGCCACTACAGGTGGAACAGAGCAGTCATCAACTGTG  350

seq1  GGTTGGCCCCAGAGTCCTAGAGCCTAGCCTCCTACTCAGAGTGCACTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCCCCAGAGTCCTAGAGCCTAGCCTCCTACTCAGAGTGCACTAGC  400

seq1  ATCTGGGTTCCCATGTGAGTTAGAGCAGGATCCAATGGTCCAGTGTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTTCCCATGTGAGTTAGAGCAGGATCCAATGGTCCAGTGTCTCC  450

seq1  TGCCTTCCAGCATCCTAGCTGACCCACCACACTGACCACATTCTTTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCCAGCATCCTAGCTGACCCACCACACTGACCACATTCTTTGTGT  500

seq1  GTGTGTGTGTGGTGTTGTGTATAATATAGGTGTGTCACGAGAGTGTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGGTGTTGTGTATAATATAGGTGTGTCACGAGAGTGTGTGC  550

seq1  ACATGCATATTTGCATATACTTGCGGAGGCCAAAGGCCTGGCATCTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATATTTGCATATACTTGCGGAGGCCAAAGGCCTGGCATCTTTTT  600

seq1  TGCGACAGGGCTCCTATTGAATCCTCTGGGCTGGCTGGCTGGCCAGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGACAGGGCTCCTATTGAATCCTCTGGGCTGGCTGGCTGGCCAGTGAG  650

seq1  TGGAGCTCAGCTTCTCTCTGCCTCAGTAGTGCTGATTACAGATTGCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTCAGCTTCTCTCTGCCTCAGTAGTGCTGATTACAGATTGCCTGT  700

seq1  CATCAACCCTGTGCTTTCATGT-GGGCCGGGGTCCCAAGCAGGACCTCCT  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATCAACCCTGTGCTTTCATGTGGGGCCGGGGTCCCAAGCAGGACCTCCT  750

seq1  GCTTCTATGGCAGACA-TTTTGCTGACTGAGTCATCTCCCCAATCTC-TT  797
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  GCTTCTATGGCAGACATTTTTGCTGACTGAGTCATCTCCCCAATCTCTTT  800

seq1  TCTGGGGGGTTTGAGACAGGGT  819
      ||||||||||||||||||||||
seq2  TCTGGGGGGTTTGAGACAGGGT  822

seq1: chr9_119138733_119139910
seq2: B6Ng01-066B19.g_67_1152 (reverse)

seq1  GCTTCATTTCAATATATTTGTTTAGAATTTGCTGTAAATGTATACCCCAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TACCTTATAATGCTACCACTGGTTGGAAAAAGACTAAGGCTCATTTTCAG  100
                                           |  ||||||||  
seq2  -------------------------------------GCTTCATTTTCCA  13

seq1  GGAGTGTGGAGAGATACTGATATTTCACATGACATGGAACAGTTAAAGGC  150
      |||||||||||||||||||||||||||| |||||| |||||||  || ||
seq2  GGAGTGTGGAGAGATACTGATATTTCACCTGACAT-GAACAGT--AAAGC  60

seq1  AGAAATTTCAGATATTAACAAAAGCCTTTCGGATACTGGGAACATTGATG  200
      |||||||||||||| | |||||||||||||||||||||||||||||||||
seq2  AGAAATTTCAGATAATTACAAAAGCCTTTCGGATACTGGGAACATTGATG  110

seq1  AATTATCCAGAGATTTAAAAAAATAACCTAAGGGCATTGAATCACTTGGA  250
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  AATTATCCAGAGATTT-AAAAAATAACCTAAGGGCA-TGAATCACTTGGA  158

seq1  TTGGGTTCAATATTTAATCTTGCTTGTTATTATTATTGGCATCATCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTCAATATTTAATCTTGCTTGTTATTATTATTGGCATCATCATTA  208

seq1  TTATTATTTAGTAATTGTTGTATTTCCACTCATCTTTAGAGTTCTTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTAGTAATTGTTGTATTTCCACTCATCTTTAGAGTTCTTCTGA  258

seq1  GACTCCTGCCCACCTGTACCAGGACCCTGAATTCTCCCTCGGATTGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTGCCCACCTGTACCAGGACCCTGAATTCTCCCTCGGATTGAGGG  308

seq1  GGCTGACTGAGGCCAGTCCGTAGCACTGTGCCTCATTCACAGCATAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACTGAGGCCAGTCCGTAGCACTGTGCCTCATTCACAGCATAGAAA  358

seq1  GCTCTGCTATGACATATGATAGGTAGAGATGTCTGAAACTAACCCCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCTATGACATATGATAGGTAGAGATGTCTGAAACTAACCCCACAG  408

seq1  GCCATTCAGGGGCTCTCGAAGAGTTCAGGTTTCAGACTGTCCAAGTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCAGGGGCTCTCGAAGAGTTCAGGTTTCAGACTGTCCAAGTGGCT  458

seq1  CCAGGGCTCAGACACTCACCCAGAATCATGGTGCTCATTATGGATCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTCAGACACTCACCCAGAATCATGGTGCTCATTATGGATCCTGC  508

seq1  AACAGCAACAGCTGAGAAGAAGCACAGAACCATGTAGAGCTCAAAGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAACAGCTGAGAAGAAGCACAGAACCATGTAGAGCTCAAAGCTGG  558

seq1  GCACAAAGGCTGTGGCCACACCTATGGTACCTGACAGAAGCAGCTGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGGCTGTGGCCACACCTATGGTACCTGACAGAAGCAGCTGCAGC  608

seq1  AGAAGGCTGGCTCTTCGGCCAATCCTGAGGTAACAGGGGGACAGGATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTGGCTCTTCGGCCAATCCTGAGGTAACAGGGGGACAGGATTTG  658

seq1  AAGTGAAGAGGCTGGCCCAGGACTGAATCAAGAGAGCCCCCGGCAAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAGAGGCTGGCCCAGGACTGAATCAAGAGAGCCCCCGGCAAGCCT  708

seq1  ATTCTGGCCCTCTGTCAGAGTGGGGAGATAGGGTTTTCCCTGGTAGGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGCCCTCTGTCAGAGTGGGGAGATAGGGTTTTCCCTGGTAGGTAG  758

seq1  GCAATAGGACTTATCTTAATGGCTACTGGTATAGCTCTGGGGGGTGGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGGACTTATCTTAATGGCTACTGGTATAGCTCTGGGGGGTGGGGA  808

seq1  GGGGGTAACTGAGCAAGCACCAGAAGCCTAAAAGCACGCCGGACCAGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTAACTGAGCAAGCACCAGAAGCCTAAAAGCACGCCGGACCAGCAG  858

seq1  CACATACCAGTCACAGACAGGCCCAAAGACCAGGGCTCCAACAAGAAGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACCAGTCACAGACAGGCCCAAAGACCAGGGCTCCAACAAGAAGTC  908

seq1  CAGCCATGAACACCGACTGAGAGGTCCTCTTCAGGTTCTTTCAATCACAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGAACACCGACTGAGAGGTCCTCTTCAGGTTCTTTCAATCACAC  958

seq1  ACCAGGTCAAACTGAAAGGAAAGCAAGATATGTAAGACTGGGTCTAACAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTCAAACTGAAAGGAAAGCAAGATATGTAAGACTGGGTCTAACAG  1008

seq1  CCAGGGCCAACTTTATCATCGAATTCCCTTGGTTCCTACATTGTGTATCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCCAACTTTATCATCGAATTCCCTTGGTTCCTACATTGTGTATCA  1058

seq1  AGGCAATTCTCAGCACCATAGGGAATTC  1178
      ||||||||||||||||||||||||||||
seq2  AGGCAATTCTCAGCACCATAGGGAATTC  1086