BAC Information

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BAC

Clone NameB6Ng01-068I21
Chromosome9 (Build37)
Map Location 26,945,738 - 26,946,718
singlet/doubletsinglet
Overlap geneJam3
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3
Downstream geneIgsf9b, Spata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068I21.bB6Ng01-068I21.g
ACCDH887107DH887108
length9731,112
definitionDH887107|Mus musculus domesticus DNA, BAC clone: B6Ng01-068I21, 5' end.DH887108|Mus musculus domesticus DNA, BAC clone: B6Ng01-068I21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacaatgctctgctttaacgcccttgcacgtggcgcgttatgtc
tttgagtggtgaactttgatgggctaggagttttcttttctctcattctt
ccccccacaaatgtccttcacccaaaaactataacacaataacctcagaa
tatgaaacatatgggaaaagttatgggaaaaaaataaaacaactaaaatt
ccaaggtataaacaccgcagaacatggaggccagtctagttatgtaccct
ttcagccgtggactccgctatcatttgtttaagacagtcttgctaagcca
tcctggaactcataatcctcctgcctcagtgtcctgagagctggaactat
ctacataagcaccacacaagcagcttcagccattaagggtacttactgaa
ccacacatttgttcttagtgtaaactctgaggtacagtggcagccccctt
acttctaaagatgctggaattgccactaaacctcttactgtcagtctttc
ctggttcaggcaggaaaactgtctcccaggcaaagaggtctaatcttttc
cgtaaataatcaaggaaccactgtgactaagaacgtctgaaactctgaaa
gaatgcttcttctttactcacaaattttaaaatttgattagtgttctgca
gaaaaattctggaggacaaccaactgcattttgaacatagtatttttgca
acgtcggaatttaattttttttttaaatttgcaacctcctatggggggtg
gcagcacacacctttaatcccagcacctgggaggcagaggcaggtgaatc
tctctgagtttgaggccagcctggtctacagagtgagtttcagcgcagcc
aaacaacataaaggaacccttgtctcagagacttaaaaaaaaaaaattgc
atctcccaaatcaagtcccttgcctggggaaatctctgtggctattttaa
cacccctattaccagaagtagaa
gaattctcttttctagtccactctacttggtgttctgcaagctttttgta
cattgataggaatctctttttaggttagggaaattttcttctgattttgt
tgaagatgttttctgggccttcaaactgagagtcttctcctttttttagt
cctattattctttggtgtggtcttttcatagtgtcctggatgttttgtgt
tagaaatctttagctattctttgacagatgtataaatttcttctattata
tcttctatacctgagattctatctttcatctcttgtattctgttggcgat
gcttgtgtctgcatttcctgatctctttcctaggttttctatctccagga
ttgccttaagtttttctttattgcttctattttcattttcaggtcttaaa
gcattatgttcacttccttcacctgtttgattgtattttcttgtatttct
ttatacttattcatttcctctttaaggacctctacctatttgattgtatg
ttcctgtatctctttaagagatttattcatttcctctttaaagccctcta
tcatctccataagaatagatttaagatcattttctttcgattcaggtgtg
ttaggatattcaggtcttgttgtatgtagtaggatagctgggttctaatg
gtgccatattggcctggcttttgtatctagggatacaggttgacttcatg
gtccctgatagctgcagtcttctgtttgttctgggcagcagcaggcctcc
aggcattcagtcagagttgtggtcctagaaatggagtgcagaggggccag
ggcagaaagttgatggttctgggtttgccaagggggctgaccaggcaggg
aattgggtaagtgtgctagtagtcgctgatgtctgcaggcatctgggatt
gcggttagaggtgtggaccagaagatggagcacggaggggatagggaaga
ctcacatctactggcatgccaggtacccagcaagcaggggttggggcttg
taagcctacttggtttgaccttgacagcacaggcttccatctttatgaac
ttttgctggaatgggttcgacttaatatttagggggtgttgggataaggg
ctcctctccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_26945738_26946718
seq2: B6Ng01-068I21.b_46_1018

seq1  GAATTCCACAATGCTCTGCTTTAACGCCCTTGCACGTGGCGCGTTATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAATGCTCTGCTTTAACGCCCTTGCACGTGGCGCGTTATGTC  50

seq1  TTTGAGTGGTGAACTTTGATGGGCTAGGAGTTTTCTTTTCTCTCATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTGGTGAACTTTGATGGGCTAGGAGTTTTCTTTTCTCTCATTCTT  100

seq1  CCCCCCACAAATGTCCTTCACCCAAAAACTATAACACAATAACCTCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACAAATGTCCTTCACCCAAAAACTATAACACAATAACCTCAGAA  150

seq1  TATGAAACATATGGGAAAAGTTATGGGAAAAAAATAAAACAACTAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAACATATGGGAAAAGTTATGGGAAAAAAATAAAACAACTAAAATT  200

seq1  CCAAGGTATAAACACCGCAGAACATGGAGGCCAGTCTAGTTATGTACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTATAAACACCGCAGAACATGGAGGCCAGTCTAGTTATGTACCCT  250

seq1  TTCAGCCGTGGACTCCGCTATCATTTGTTTAAGACAGTCTTGCTAAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCGTGGACTCCGCTATCATTTGTTTAAGACAGTCTTGCTAAGCCA  300

seq1  TCCTGGAACTCATAATCCTCCTGCCTCAGTGTCCTGAGAGCTGGAACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCATAATCCTCCTGCCTCAGTGTCCTGAGAGCTGGAACTAT  350

seq1  CTACATAAGCACCACACAAGCAGCTTCAGCCATTAAGGGTACTTACTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAAGCACCACACAAGCAGCTTCAGCCATTAAGGGTACTTACTGAA  400

seq1  CCACACATTTGTTCTTAGTGTAAACTCTGAGGTACAGTGGCAGCCCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATTTGTTCTTAGTGTAAACTCTGAGGTACAGTGGCAGCCCCCTT  450

seq1  ACTTCTAAAGATGCTGGAATTGCCACTAAACCTCTTACTGTCAGTCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAAAGATGCTGGAATTGCCACTAAACCTCTTACTGTCAGTCTTTC  500

seq1  CTGGTTCAGGCAGGAAAACTGTCTCCCAGGCAAAGAGGTCTAATCTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCAGGCAGGAAAACTGTCTCCCAGGCAAAGAGGTCTAATCTTTTC  550

seq1  CGTAAATAATCAAGGAACCACTGTGACTAAGAACGTCTGAAACTCTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAATAATCAAGGAACCACTGTGACTAAGAACGTCTGAAACTCTGAAA  600

seq1  GAATGCTTCTTCTTTACTCACAAATTTTAAAATTTGATTAGTGTTCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTCTTCTTTACTCACAAATTTTAAAATTTGATTAGTGTTCTGCA  650

seq1  GAAAAATTCTGGAGGACAACCAACTGCATTTTGAACATAGTATTTTTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTCTGGAGGACAACCAACTGCATTTTGAACATAGTATTTTTGCA  700

seq1  ACGTCGGAATTTAATTTTTTTTTTAAATTTGCAACCTCCTATGGGGGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCGGAATTTAATTTTTTTTTTAAATTTGCAACCTCCTATGGGGGGTG  750

seq1  GCAGCACACACCTTTAATCCCAGCACCTGGGAGGCAGAGGCAGGTGAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACACACCTTTAATCCCAGCACCTGGGAGGCAGAGGCAGGTGAATC  800

seq1  TCTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGCGCAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGCGCAGCC  850

seq1  ACAACAACATAGAGAAACCC-TGTCTTCAGAGACTAAAAAAAAAAAAAAT  899
      | ||||||||| || ||||| |||| |||||||||  |||||||||||||
seq2  A-AACAACATAAAGGAACCCTTGTC-TCAGAGACT-TAAAAAAAAAAAAT  897

seq1  TGCAACCTCCCAAATCAAGTCCCCTTGCCTGGGGAAAATCTCTGTGGCTA  949
      ||| | |||||||||||||| ||||||||||||| |||||||||||||||
seq2  TGC-ATCTCCCAAATCAAGT-CCCTTGCCTGGGG-AAATCTCTGTGGCTA  944

seq1  TTTTAACACCCCCTATATAACCAGAAGTAGAA  981
      ||||||||||||   ||| |||||||||||||
seq2  TTTTAACACCCC---TATTACCAGAAGTAGAA  973