BAC Information

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BAC

Clone NameB6Ng01-073B13
Chromosome9 (Build37)11 (Build37)
Map Location 117,007,033 - 117,007,085109,553,151 - 109,554,262
singlet/doubletsingletsinglet
Overlap geneRbms3
Upstream geneTgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073B13.bB6Ng01-073B13.g
ACCDH890326DH890327
length2511,099
definitionDH890326|Mus musculus domesticus DNA, BAC clone: B6Ng01-073B13, 5' end.DH890327|Mus musculus domesticus DNA, BAC clone: B6Ng01-073B13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(117,007,033 - 117,007,085)(109,553,151 - 109,554,262)
sequence
gaattcttagtgtgcttagtgccctcagttcaatccctagcataacataa
gtccagcatggtggaccacacctctaatccctgccctcaggagggacagg
caggtggatcagaagttcaaggtcatctttgactacacagaaaatttgag
gccagattatgatatatatcctgcaacaacaaaattagatagatagatag
atagatagatagatagatagatagatagatagatagatggatggatggat
g
gaattctctggggtcactgggcaggagacatgtaaactttataacaacca
cagaggggacaggctgacttgtacgcccgaaacaaatgtgtactcagaag
caaagcgttctcaggctgggcaggcagcagaaatgagcaaggaatgtagg
ccgaaggcagcaaggagccatgaggagtttgtcaatcggagaggagcctc
cccagataaaagggagcagcggctttcacttttagctcaatgctgttttg
aactgacactgtccatcaatcaaatgtttgccgagaactagatatcgatc
tatattttggaactagagttgcacacaaaataagtggttttatttttttt
ctcacggagcatctttcaggcgagtaatttattctgagttttttccaaag
gaagctagaaatccagattgttatcccaattaagcatctccttttaaaaa
gaaaggaaaaatatgttggttgggattaaacaccatctcatgggaggcca
aacaagttcaccgtcattgcaagtttgctgccctattggagaacaagcct
tatcagtgtgaaacgatattaaaagcccaccctccaccacgctgatttga
catgctggggaaagtctacaaatgaggagacaagacaatgaagcattcgt
attatttaagacatggattcctagagcagaaaaatggcggctttatcttt
ttttttttttttctcacaagatcaaggccctggttagccttgagctcggg
gtagaggaacccagtctggtgacatctctgaagcgcagccacaggccatt
gaatccctcctctctttccctccccaacaaagggtcaacatgtacttttg
tgattactaaaagtgaccaatattaaagttttctagacatagcattttat
agaaatcaagggagagggcaaattgttgaccaggtctctagccaactttt
cctttattacattttattttaggaggaaaaaaaaagaaaagaaattaacc
ccaagtctggcagcttctcgttccagggctcttagaagcttgagctgttg
taattgctagactcctctcggaccttgctgaaggatgggaggtgccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_117007033_117007085
seq2: B6Ng01-073B13.b_239_291 (reverse)

seq1  CATCCATCCATCCATCTATCTATCTATCCATCTATCCATCTATCCATCTA  50
      |||||||||||||||||||||||||||| ||||||| ||||||| |||||
seq2  CATCCATCCATCCATCTATCTATCTATCTATCTATCTATCTATCTATCTA  50

seq1  TCT  53
      |||
seq2  TCT  53

seq1: chr11_109553151_109554262
seq2: B6Ng01-073B13.g_70_1168

seq1  GAATTCTCTGGGGTCACTGGGCAGGAGACATGTAAACTTTATAACAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGGGTCACTGGGCAGGAGACATGTAAACTTTATAACAACCA  50

seq1  CAGAGGGGACAGGCTGACTTGTACGCCCGAAACAAATGTGTACTCAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGGACAGGCTGACTTGTACGCCCGAAACAAATGTGTACTCAGAAG  100

seq1  CAAAGCGTTCTCAGGCTGGGCAGGCAGCAGAAATGAGCAAGGAATGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCGTTCTCAGGCTGGGCAGGCAGCAGAAATGAGCAAGGAATGTAGG  150

seq1  CCGAAGGCAGCAAGGAGCCATGAGGAGTTTGTCAATCGGAGAGGAGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGGCAGCAAGGAGCCATGAGGAGTTTGTCAATCGGAGAGGAGCCTC  200

seq1  CCCAGATAAAAGGGAGCAGCGGCTTTCACTTTTAGCTCAATGCTGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATAAAAGGGAGCAGCGGCTTTCACTTTTAGCTCAATGCTGTTTTG  250

seq1  AACTGACACTGTCCATCAATCAAATGTTTGCCGAGAACTAGATATCGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACACTGTCCATCAATCAAATGTTTGCCGAGAACTAGATATCGATC  300

seq1  TATATTTTGGAACTAGAGTTGCACACAAAATAAGTGGTTTTATTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTGGAACTAGAGTTGCACACAAAATAAGTGGTTTTATTTTTTTT  350

seq1  CTCACGGAGCATCTTTCAGGCGAGTAATTTATTCTGAGTTTTTTCCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGGAGCATCTTTCAGGCGAGTAATTTATTCTGAGTTTTTTCCAAAG  400

seq1  GAAGCTAGAAATCCAGATTGTTATCCCAATTAAGCATCTCCTTTTAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGAAATCCAGATTGTTATCCCAATTAAGCATCTCCTTTTAAAAA  450

seq1  GAAAGGAAAAATATGTTGGTTGGGATTAAACACCATCTCATGGGAGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAAAATATGTTGGTTGGGATTAAACACCATCTCATGGGAGGCCA  500

seq1  AACAAGTTCACCGTCATTGCAAGTTTGCTGCCCTATTGGAGAACAAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTTCACCGTCATTGCAAGTTTGCTGCCCTATTGGAGAACAAGCCT  550

seq1  TATCAGTGTGAAACGATATTAAAAGCCCACCCTCCACCACGCTGATTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGTGAAACGATATTAAAAGCCCACCCTCCACCACGCTGATTTGA  600

seq1  CATGCTGGGGAAAGTCTACAAATGAGGAGACAAGACAATGAAGCATTCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGGGAAAGTCTACAAATGAGGAGACAAGACAATGAAGCATTCGT  650

seq1  ATTATTTAAGACATGGATTCCTAGAGCAGAAAAATGGCGGCTTTATCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAAGACATGGATTCCTAGAGCAGAAAAATGGCGGCTTTATCTTT  700

seq1  TTTTTTTTTTTTCTCACAAGATCAAGGCCCTGGTTAGCCTTGAGCTCGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTCTCACAAGATCAAGGCCCTGGTTAGCCTTGAGCTCGGG  750

seq1  GTAGAGGAACCCAGTCTGGTGACATCTCTGAAGCGCAGCCACAGGCCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGAACCCAGTCTGGTGACATCTCTGAAGCGCAGCCACAGGCCATT  800

seq1  GAATCCCTCCTCTCTTTCCCTCCCCAACAAAGGGTCAACATGTACTTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCTCCTCTCTTTCCCTCCCCAACAAAGGGTCAACATGTACTTTTG  850

seq1  TGATTACTAAAAGTGACCAATATTAAAGTTTTCTAGACATAGCATTTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTAAAAGTGACCAATATTAAAGTTTTCTAGACATAGCATTTTAT  900

seq1  AGAAATCAAGGGAGAGGGCAAATTGTTGACCAGGTCTCTAGCCAACTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCAAGGGAGAGGGCAAATTGTTGACCAGGTCTCTAGCCAACTTTT  950

seq1  CCTTTATTAACATTTTATTTTTAGGGAGGAAAAAAAAAAAAGAAAAAGAA  1000
      |||||||| ||||||||||||   ||||||||||||||     |||||||
seq2  CCTTTATT-ACATTTTATTTT--AGGAGGAAAAAAAAA----GAAAAGAA  993

seq1  AATAAACCCCCAAGTCTGGCAGGCTCTCGTTCCCAGGGCTCTTTGGAAGC  1050
      | |||  |||||||||||||||  ||||||| ||||||||| || |||||
seq2  ATTAA--CCCCAAGTCTGGCAGCTTCTCGTT-CCAGGGCTC-TTAGAAGC  1039

seq1  TAGAGCTG-TGTAATTGCTAGACT-CTCTCGGGAGCTTGCTGGAAGGAGT  1098
      | |||||| ||||||||||||||| ||||| ||| |||||| |||||| |
seq2  TTGAGCTGTTGTAATTGCTAGACTCCTCTC-GGACCTTGCT-GAAGGA-T  1086

seq1  GGGAGGTGGCCAGC  1112
      ||||||| ||||||
seq2  GGGAGGT-GCCAGC  1099