BAC Information

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BAC

Clone NameB6Ng01-074C08
Chromosome9 (Build37)
Map Location 17,403,065 - 17,609,236
singlet/doubletdoublet
Overlap geneLOC244710, LOC100040508
Upstream geneEG434373, LOC100040074, LOC100040090
Downstream geneEG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074C08.bB6Ng01-074C08.g
ACCDH891076DH891077
length1,0171,143
definitionDH891076|Mus musculus domesticus DNA, BAC clone: B6Ng01-074C08, 5' end.DH891077|Mus musculus domesticus DNA, BAC clone: B6Ng01-074C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,608,229 - 17,609,236)(17,403,065 - 17,404,230)
sequence
gaattcctctgttaagatattgaagtagcaaaaaccaagtcccattaata
attgacccgagaatgcatgaatttgaagtgaccttgacttggaaaccata
caacctccaagctaacctccattgctaactgttgagaagttcacaatcat
gtgtcagtttgggacagggcccatatgtgagtggttttatttgcccctat
gtatggtttattaacgtgtacacaattcaaactgggaagattctatttaa
tagaataatcttgctcttccaattacataaccgttcctttcactctcacc
cattcaatttaggctgacttcccaccccgagtgatcatcaatgtaatcta
tgagatgtctaacatcttatggatgtttacagtgtctccctttctcataa
tttgagttattgggtttacacagtgtttcttggaccttttttctctattt
ttgtgtgtgaaaattaaaatgattcataactgtgtatgaggcgggtgttt
gtgttatgcaactgtaataatgtatgtagatgtatgtgtaaatcaccaat
ataaccacagatatttaaacttcttttataatagtgggctccattacaca
taatgtattttagacttatgtgatgtaattcataaataatttatgtaact
taattaacagtatttttcaaacattaatataaaataatgtattaatacat
atttgggaagacatcacagtagtaaaaagttttactatgtatcttggact
ttcatgtatgcttatacatgtagaaagctttttatctaactgtaatttat
gatgttgaaactatgaaattatgcccaattccatgttttgttacatgcct
gttccatgtacttccccttgttggtagtcttgtagaaatgatttgaaatc
tcttcttaagaactaaatatcttataaactaattattcttataaacttgg
ggttttcttaagtttcaatgccattcaaatgagccgctgtgtattgttga
ttagtggtgacttggta
gaattccagactaattgcatgccagggaccggggactgactatacatttt
cttactgcctctactgacccctgggaagtgtatcctactttctgaaatga
ttccgtgttccgatcatgattacctgggtgagatgatttattcaaagttt
ggatgccatacattgcgatgagtgagacataggactttgtacatttgctt
tcacatctgggcaaatgtcttctctaaagcagcatgaattattcaacaac
ttggcactgatgatcatttctggggctgacattagttttgtattttgagg
tcaatgtcccacatcacttcacggtggtggttcctgaaggaaacatttct
accactggaattgggaattcaaagggtgaatacatctgtaatttatcggt
tttgtcaaggtcaacatttcaaatgttggaaaactgcttgtctgaccgag
aatcacccgacgggacctatgtctttcccccctcacctcgtaattttttg
tgtaaatgtttttaataactatcaaacatgttttttaaaaacaaaatatc
agcaccttagcttgtgctttttcaatgtaactaaacacgttcataattct
taaaaaaacatttatattgcctgttgtatgaaattatctttctgtatttc
gcatcattctgattgagttatttcatttttataatatttcggttgattat
actcttatatatgaatgtacagatatacatttttcttatagcaatttgca
catatgtcatattgtttcagctttattttttaagtatggtcccttttgtt
tgagagaggatcttgttatacagactaggctgacttcagctttgcactct
tctcgttcatccccacaatgatgtatgtactggtatgcatagcttcaaag
ttgcctacattgatgtgttctttcctgttgaacctacggctttatatcga
actatggcttgagatcatatatattagagatctcagatgaccctttatcc
ttttcatagcatgattgtagattcataccagctccagcctgcatttcaaa
tggagttagtgatgatatcattaccctccaatctcatctttaccattctc
agaacataaaccctgcaataaaaaatatttttaccaatgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17608229_17609236
seq2: B6Ng01-074C08.b_54_1056 (reverse)

seq1  CAAGATCACAACTAATCAAACAATACAACAGCGGCTCA-TTGAATGGCAT  49
      |||| |||| ||||||| |||||||| ||||||||||| |||||||||||
seq2  CAAG-TCACCACTAATC-AACAATAC-ACAGCGGCTCATTTGAATGGCAT  47

seq1  TGAAACTTAAGAAAACCCCAAGTTTATAAGAATAATTAGTTTATAAGAAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGAAACTTAAGAAAACCCCAAGTTTATAAGAATAATTAGTTTATAAG-AT  96

seq1  ATTTAGTTCTTAAGAAGAGATTTCAAATCATTTCTACAAGACTACCAACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTCTTAAGAAGAGATTTCAAATCATTTCTACAAGACTACCAACA  146

seq1  AGGGGAAGTACATGGAACAGGCATGTAACAAAACATGGAATTGGGCATAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAGTACATGGAACAGGCATGTAACAAAACATGGAATTGGGCATAA  196

seq1  TTTCATAGTTTCAACATCATAAATTACAGTTAGACTAAAAGCTTTCTACA  249
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  TTTCATAGTTTCAACATCATAAATTACAGTTAGATAAAAAGCTTTCTACA  246

seq1  TGTATAAGCATACATGAAAGTCCAAGATACATAGTAAAACTTTTTACTAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAGCATACATGAAAGTCCAAGATACATAGTAAAACTTTTTACTAC  296

seq1  TGTGATGTCTTCCCAAATATGTATTAATACATTATTTTATATTAATGTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTCTTCCCAAATATGTATTAATACATTATTTTATATTAATGTTT  346

seq1  GAAAAATACTGTTAATTAAGTTACATAAATTATTTATGAATTACATCACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACTGTTAATTAAGTTACATAAATTATTTATGAATTACATCACA  396

seq1  TAAGTCTAAAATACATTATGTGTAATGGAGCCCACTATTATAAAAGAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTAAAATACATTATGTGTAATGGAGCCCACTATTATAAAAGAAGT  446

seq1  TTAAATATCTGTGGTTATATTGGTGATTTACACATACATCTACATACATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATCTGTGGTTATATTGGTGATTTACACATACATCTACATACATT  496

seq1  ATTACAGTTGCATAACACAAACACCCGCCTCATACACAGTTATGAATCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTTGCATAACACAAACACCCGCCTCATACACAGTTATGAATCAT  546

seq1  TTTAATTTTAGATTACTAAAAATAGAGAAAAAAGGGCCATGTAACAGTGA  599
      |||||||||     || |||||||||||||||||| ||| | |||| || 
seq2  TTTAATTTTCACACAC-AAAAATAGAGAAAAAAGGTCCAAGAAACACTGT  595

seq1  GTAAACACAATCTACT-AAATTATCTGAAAGGGAGACACTGTAAACATCC  648
      |||||| ||||  ||| |||||||  ||||||||||||||||||||||||
seq2  GTAAACCCAAT-AACTCAAATTATGAGAAAGGGAGACACTGTAAACATCC  644

seq1  ATAAGATGGTAGACATCTCATAGATTACAAAGATGATTATTTGGGGTTAG  698
      |||||||| ||||||||||||||||||||  |||||| | | |||||  |
seq2  ATAAGATGTTAGACATCTCATAGATTACATTGATGATCACTCGGGGTGGG  694

seq1  AAGTCAGCCAAAATAGAATGTGAGAGAGTAAAAGGAACCTTTATGTAATT  748
      ||||||||| |||| ||||| | |||||| ||||||||  ||||||||||
seq2  AAGTCAGCCTAAATTGAATGGGTGAGAGTGAAAGGAACGGTTATGTAATT  744

seq1  TTAAGATTAAGATTATTCTATTAAATATAATTACTT--TACTCTAAATAG  796
        ||||  ||||||||||||||||||| |||  |||   | | | ||| |
seq2  GGAAGAGCAAGATTATTCTATTAAATAGAAT--CTTCCCAGTTTGAATTG  792

seq1  TTTACAAGTAAATATACCATACAGCTGGCTAAATAAAACCACTCACATAT  846
      | |||| || |||| ||||||||   ||  ||||||||||||||||||||
seq2  TGTACACGTTAATAAACCATACATAGGGGCAAATAAAACCACTCACATAT  842

seq1  GTGCCCTGTCCCAAACTTGACACATGACTGTGAACTTCTCTACAGTTAGC  896
      | |||||||||||||| |||||||||| |||||||||||| |||||||||
seq2  GGGCCCTGTCCCAAAC-TGACACATGATTGTGAACTTCTCAACAGTTAGC  891

seq1  AATGGAGCTTAGCTTGGAGGTTGTATGGTTTCAAAGTCAACGTGGTTTCA  946
      ||||||| |||||||||||||||||||||||| ||||||| ||   ||||
seq2  AATGGAGGTTAGCTTGGAGGTTGTATGGTTTCCAAGTCAAGGTCACTTCA  941

seq1  AACTCATTTATTATCAGTTAAATTATTTATTTATTATGGTTGTTGCTACT  996
      || ||||  ||| || | | ||||||| ||      ||||| ||||||||
seq2  AATTCATGCATTCTCGGGTCAATTATTAATGGGACTTGGTTTTTGCTACT  991

seq1  TCAATATCTTAA  1008
      ||||||||||||
seq2  TCAATATCTTAA  1003

seq1: chr9_17403065_17404230
seq2: B6Ng01-074C08.g_67_1209

seq1  GAATTCCAGTCTTCTTGCATGCCATGCACAGATAATTTACTATACATTTT  50
      ||||||||| ||  |||||||||| | || |   | | ||||||||||||
seq2  GAATTCCAGACTAATTGCATGCCAGGGACCGGGGACTGACTATACATTTT  50

seq1  CTTACTCCCTCTACACATATATAAAGAAGTGTATCCTACTTTATAAAATG  100
      |||||| |||||||  |    |   ||||||||||||||||| | |||||
seq2  CTTACTGCCTCTACTGACCCCT-GGGAAGTGTATCCTACTTTCTGAAATG  99

seq1  ATTTTGTGTTATGATCATGATTACATGCATTTGCTTATTTATTTAAAATT  150
      |||  |||||  |||||||||||| ||  |  | | ||||||| ||| ||
seq2  ATTCCGTGTTCCGATCATGATTACCTGGGTGAGATGATTTATTCAAAGTT  149

seq1  AATTTTAAATACATTGTGATGATTGAGTCATATGAGTTTGTACATTTGCT  200
          |   |||||||| ||||| |||| |||| || ||||||||||||||
seq2  TGGATGCCATACATTGCGATGAGTGAGACATAGGACTTTGTACATTTGCT  199

seq1  TTCACATCTGGGCAAATGTCTTCTCTACAAGCAGCATGAATTATTCAACA  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCACATCTGGGCAAATGTCTTCTCTA-AAGCAGCATGAATTATTCAACA  248

seq1  ACTTGGCACTGATGATCATTTCAATGGCTGACATTATTTTTTTATTTTGA  300
      ||||||||||||||||||||||   ||||||||||| |||| ||||||||
seq2  ACTTGGCACTGATGATCATTTCTGGGGCTGACATTAGTTTTGTATTTTGA  298

seq1  GGTCAATGTTCCACATCACTTCACACATGTGGTTCCTGAAGGAAACATTT  350
      ||||||||| ||||||||||||||    ||||||||||||||||||||||
seq2  GGTCAATGTCCCACATCACTTCACGGTGGTGGTTCCTGAAGGAAACATTT  348

seq1  CTACAACTGGAATTGGTAATTCAAAGGGTGAATACATCTGTAATTTATCA  400
      |||| ||||||||||| |||||||||||||||||||||||||||||||| 
seq2  CTACCACTGGAATTGGGAATTCAAAGGGTGAATACATCTGTAATTTATCG  398

seq1  GTTTTGTCAAGGTCGTCATTACAAATGTTGGAGAACTGCTTTTCTGACTG  450
      ||||||||||||||  |||| ||||||||||| |||||||| |||||| |
seq2  GTTTTGTCAAGGTCAACATTTCAAATGTTGGAAAACTGCTTGTCTGACCG  448

seq1  AGAATCACCCAACGGTACCTATTTCTTTACCCCATCACCTCTTAATTTTT  500
      |||||||||| |||| |||||| ||||| |||| ||||||| ||||||||
seq2  AGAATCACCCGACGGGACCTATGTCTTTCCCCCCTCACCTCGTAATTTTT  498

seq1  TGTGTGAATGTTTTTAATAACTATCAAACATGTTTTGTAAAAACAAAATA  550
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTGTAAATGTTTTTAATAACTATCAAACATGTTTTTTAAAAACAAAATA  548

seq1  TCAGCACCTTAGCTTGTGCTTTTTCAATGTAACTAAACACTTTCATAATT  600
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCAGCACCTTAGCTTGTGCTTTTTCAATGTAACTAAACACGTTCATAATT  598

seq1  CTTAAAAAAACATTTATATTGCCTGTTGTATGTTACTATCTTTCTGTATT  650
      ||||||||||||||||||||||||||||||||  | ||||||||||||||
seq2  CTTAAAAAAACATTTATATTGCCTGTTGTATGAAATTATCTTTCTGTATT  648

seq1  TTGCATCATTCTGATTGAGTTATTTCATTTTTATAATATTTC-TTTGATT  699
      | ||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  TCGCATCATTCTGATTGAGTTATTTCATTTTTATAATATTTCGGTTGATT  698

seq1  ATACTCTTATATATGAATGTACAGATATACA-TTTTCTTATAGCAATTTG  748
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATACTCTTATATATGAATGTACAGATATACATTTTTCTTATAGCAATTTG  748

seq1  CACATATGTCATATTGTTTCTGCTTTAATTTTTAGGTTTCGTCCCTTTTG  798
      |||||||||||||||||||| |||||| |||||| || | ||||||||||
seq2  CACATATGTCATATTGTTTCAGCTTTATTTTTTAAGTATGGTCCCTTTTG  798

seq1  TTTGAGAGAGTATCTTGTTATACAGACTAGGCTGCCATCAAACTTGCACT  848
      |||||||||| ||||||||||||||||||||||| | |||   |||||||
seq2  TTTGAGAGAGGATCTTGTTATACAGACTAGGCTGACTTCAGCTTTGCACT  848

seq1  CTTCCTGTTCATCCCCACAATGATGTATGTACTGGTATGCATAGCTTCAA  898
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCGTTCATCCCCACAATGATGTATGTACTGGTATGCATAGCTTCAA  898

seq1  AGTTGCCTTACATTGATTTTGTTTATTTCATGTTGTAACCTACAGCCTTT  948
      ||||||| ||||||||| |   || |||| ||||| ||||||| | ||||
seq2  AGTTGCC-TACATTGATGT--GTTCTTTCCTGTTG-AACCTAC-GGCTTT  943

seq1  ATAATCGAACATATTGCTTGAGATCATATCATATTAGAGATCTCAGAATG  998
      || ||||||| ||| |||||||||||||| |||||||||||||||| |||
seq2  AT-ATCGAAC-TATGGCTTGAGATCATAT-ATATTAGAGATCTCAG-ATG  989

seq1  ACACATTTATCCCTTTCTATAGCAAGATTGTTAGATTCTATA-CAGTTTC  1047
      || | ||||||| |||| |||||| ||||| ||||||| ||| ||| | |
seq2  AC-CCTTTATCCTTTTC-ATAGCATGATTG-TAGATTC-ATACCAGCTCC  1035

seq1  AGCATGCATTTCAAAATGAATTATTTAATGATTTTTAATTACTCTTCCAA  1097
      ||| |||||||||||  || |||  | ||||  | | ||||| | |||||
seq2  AGCCTGCATTTCAAATGGAGTTA-GTGATGA--TATCATTAC-CCTCCAA  1081

seq1  TTTTATCTTTTACACATTTCTAGATCATAAAACACATCAAATAAAAAATA  1147
      | | ||| ||||| ||||   ||| ||||||   | |  |||||||||||
seq2  TCTCATC-TTTAC-CATTCTCAGAACATAAA--CCCTGCAATAAAAAATA  1127

seq1  TTTTTTACCAAATTGTATG  1166
       ||||||||||  ||||||
seq2  -TTTTTACCAA--TGTATG  1143