BAC Information

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BAC

Clone NameB6Ng01-075K20
Chromosome9 (Build37)
Map Location 90,491,589 - 90,492,246
singlet/doubletsinglet
Overlap genenone
Upstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
Downstream geneLOC100039925, EG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075K20.b
ACCDH892170
length1,098
definitionDH892170|Mus musculus domesticus DNA, BAC clone: B6Ng01-075K20, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccgggatttttgagtcttattccttcagaatctcctttaacggg
ttcatgcttctcttcagtgactctaagaacatccaagtttgaccctgtgt
catcatctccccaatttccaagtctccgcacgtcttccactggcagagcc
tctgcagattggtctgactctgaactcccatgacccgttttgagtttatc
gtatctctcctcggctgtctccactcttccactgagcccacagagcaagg
ttttcaaatttcagttattgtattattttaggtctaaaatgtcgctttgg
tattttcctaaatgcccgctgtttctatgctgaggttttctacctggtgt
tttcggcttcttcttcttcttcttcttcttcttcttcttcttcttcttct
tcttcttcttcgacatagagattatttagtccctgttaaaggagttaact
caaaaatttaaataaagaggtacttttttgaagtgcataagatattggta
atgtaaatattttgaattcctaccctatagctaagtatgactttgtagta
ggtgtgaaatacttgccaaaacattctggcaaataaatactgagttggtt
ccggaaaggcaaaagactgcaaatagaagatgttttattcaaagtcaatt
catttttgacaagctacatggttagcttttttctatgctgatgaaaaaat
ttgtttcactgtaagccatggatagaccagtttctaatggttaacattta
cgacatgatagtttcatagacataatagcaatagatgtgattttctgcca
atataatttaatcaaaatgcctttaaattttttctagtaagaaaaaaatt
ccgaaccagtctcccaattatcactgcatgtggtttgtgtgcccaaagaa
aaaaaggatcatttttatcatctccactgcgatctctgggagcttacagg
aattactaggatccctgactactactttggatttggcatggggcatttat
aatcttggaaacttatccttggtcccactgggaagggattttcctaacaa
tctaaaaatgaaggtaagacctgggtctaggtataccttaaggttctt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_90491589_90492246
seq2: B6Ng01-075K20.b_452_1138

seq1  GACATAGAGATTATTTAGTCCCTGTTAAAGGAGTTAACTCAAAAATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGAGATTATTTAGTCCCTGTTAAAGGAGTTAACTCAAAAATTTAA  50

seq1  ATAAAGAGGTACTTTTTTGAAGTGCATAAGATATTGGTAATGTAAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGGTACTTTTTTGAAGTGCATAAGATATTGGTAATGTAAATATT  100

seq1  TTGAATTCCTACCCTATAGCTAAGTATGACTTTGTAGTAGGTGTGAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCCTACCCTATAGCTAAGTATGACTTTGTAGTAGGTGTGAAATA  150

seq1  CTTGCCAAAACATTCTGGCAAATAAATACTGAGTTGGTTCCGGAAAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAAAACATTCTGGCAAATAAATACTGAGTTGGTTCCGGAAAGGCA  200

seq1  AAAGACTGCAAATAGAAGATGTTTTATTCAAAGTCAATTCA-TTTTGACA  249
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAGACTGCAAATAGAAGATGTTTTATTCAAAGTCAATTCATTTTTGACA  250

seq1  AGCTACATGGTTAGC-TTTTTCTATGCTGATGAAAAAATTTGTTTCACTG  298
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCTACATGGTTAGCTTTTTTCTATGCTGATGAAAAAATTTGTTTCACTG  300

seq1  TAAGCCATGGATAGACCAGTTTCTAATGGTTAACATTTACGACATGATAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCATGGATAGACCAGTTTCTAATGGTTAACATTTACGACATGATAG  350

seq1  -TTCATAGACATAATAGCAATAGATGTGA-TTTCTG-CAATATAATTTAA  395
       |||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  TTTCATAGACATAATAGCAATAGATGTGATTTTCTGCCAATATAATTTAA  400

seq1  TC-AAATGCCTT--AAATTTTTCTAGTTAG-AAAAAATACCG-ACCAGTC  440
      || |||||||||  || |||||||||| || ||||||| ||| |||||||
seq2  TCAAAATGCCTTTAAATTTTTTCTAGTAAGAAAAAAATTCCGAACCAGTC  450

seq1  T-CCAATTATCACTGCATGTGGTTTGTGTGCCCAAAG-AAAAAAGGATCA  488
      | ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCCCAATTATCACTGCATGTGGTTTGTGTGCCCAAAGAAAAAAAGGATCA  500

seq1  -TTTTAACATCACCACTGCGATCTCT-GGAGC-TACAAGAATTACTAAGA  535
       ||||| |||| |||||||||||||| ||||| |||| ||||||||| ||
seq2  TTTTTATCATCTCCACTGCGATCTCTGGGAGCTTACAGGAATTACTAGGA  550

seq1  T-CCTGACTACTAC-TTGGATTT-GCATGGGCAATTTATAATTCTGG-AA  581
      | |||||||||||| |||||||| |||||||  |||||||||  ||| ||
seq2  TCCCTGACTACTACTTTGGATTTGGCATGGGGCATTTATAATCTTGGAAA  600

seq1  CTTATC--TTGTCCCACTGG--ATGGA-TTTCCTAACAATCTAAAAATAA  626
      ||||||  | ||||||||||  | ||| |||||||||||||||||||| |
seq2  CTTATCCTTGGTCCCACTGGGAAGGGATTTTCCTAACAATCTAAAAATGA  650

seq1  AG--TAGAC--AAGTCTAGTTATA-CTTAAGGTTCTT  658
      ||   ||||    |||||| |||| ||||||||||||
seq2  AGGTAAGACCTGGGTCTAGGTATACCTTAAGGTTCTT  687