BAC Information

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BAC

Clone NameB6Ng01-076H12
Chromosome9 (Build37)
Map Location 107,894,522 - 108,053,961
singlet/doubletdoublet
Overlap geneD330022A01Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, 6230427J02Rik
Downstream geneLOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076H12.bB6Ng01-076H12.g
ACCDH892726DH892727
length7991,051
definitionDH892726|Mus musculus domesticus DNA, BAC clone: B6Ng01-076H12, 5' end.DH892727|Mus musculus domesticus DNA, BAC clone: B6Ng01-076H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,053,397 - 108,053,961)(107,894,522 - 107,895,568)
sequence
gaattccacctcatgtactgccctagttagggtgcaagaaacaccacgac
caaaagcaagttgggaaggaaaggatttatttggcttatacctccacgtc
atcgtctattaataaaggaagccagggcaggaattcaacccaggagctga
tgcagaggctctggaggcatgctgcttatttgcttgctccccatggcttg
ctcagcctgttttcttgtagaactgaggaccaccaccccaagggttgcac
tgcctgcaacaggctgggccctctccatccatcactaagtaagaaaatgt
cctatagcctaatcttatggagacattttctcaattaaggctccctcctc
tctgaggattctagcttgtgtcaagttgacataaaactagccagcacatt
taccattttgagatggcattaaaaaatacatatgcagggcagtggtggca
cacacctttaattccagcactctggaggcagaggcaggctgatctctgag
ttcgaggccagcctggtctacagtgagtttcagacaaccagggctacata
tatattcttattgtcttgagaaaatcgaatcacatccagtagtcaacagt
ttcttagccccagcagctctgtttggtcatctgggctcatactgtgtgca
ggtgaggtcagagagggaccaaagatgatccctctcttcaggaggctact
ggagtctacaataagatgtcaggacaggggaaatctagcagatgtcccca
tagggcttgagccaatgtttaaggtggggtgtgtgtgtgtgtgtgtgtg
gaattcagactctgtggggaagcaggtcttggggctaattttcctgggca
ctgggtttgctctgtctgcaagcacaatgtggccagttttaccatctgta
gcttgtatccccttagggttgcagtaatgaatggaagaattcactggaaa
cagcggaagatgggattttccagcagctcctggagcctgccggggatcta
actgctctgtcatggggtaggtggagccagagctggagtctcagaagcca
cctgatggctatgtttaagcaactagccaggcaacaacagagttagcctg
agaaacagcttcctccaccatttcttcaggctaccatggcactgctcagg
ctcctggagtttctttttgctttacttatccctggtaaggagcagtcaga
tgtgtgtgtgggggaccccagtctggcagtgaagttctgacctgtagata
agctaatgtggagggcagaggctaaggaacccctgacccttgctccttct
cttggctgtttcttcagtcacgttcttcatctctcttcacttgtccagtg
tcacctgtaggagacaaggaaggactttggctgcttggcctccagatgtg
gtcaggccctaaagaaaaaggctattgctgtttttctaaatgtggctttc
tcctagtcctctacagcctgccctggactatgtatatttctgagaacaat
ggccctgggacggtccttcggcctttctccttcaactgttcctcctacat
gcccaccctggagttactcagtgtgagaccacctaccagcttcttcaata
aacccagcatgcatggggataagggagtctacctggtgatggtaaggcca
tggatacaattagggattgtggggaccaaagccagaagtggtcagaagag
acagaaagccttaggccctacaacgttcttttgtcgatccaccacaggtg
tcctttaagtagctctgctcggcttgaatgcccttgcagtgaaccatttg
agctgcagctgcagtacaaatgtggtaacttgtgggagacggatcaatct
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108053397_108053961
seq2: B6Ng01-076H12.b_282_847 (reverse)

seq1  CACACACACACACACACACACCCCACCTTAAACATTGGCTCAAGCCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACCCCACCTTAAACATTGGCTCAAGCCCTAT  50

seq1  -GGGACATCTGCTAGATTTCCCCTGTCCTGACATCTTATTGTAGACTCCA  99
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACATCTGCTAGATTTCCCCTGTCCTGACATCTTATTGTAGACTCCA  100

seq1  GTAGCCTCCTGAAGAGAGGGATCATCTTTGGTCCCTCTCTGACCTCACCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTCCTGAAGAGAGGGATCATCTTTGGTCCCTCTCTGACCTCACCT  150

seq1  GCACACAGTATGAGCCCAGATGACCAAACAGAGCTGCTGGGGCTAAGAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGTATGAGCCCAGATGACCAAACAGAGCTGCTGGGGCTAAGAAA  200

seq1  CTGTTGACTACTGGATGTGATTCGATTTTCTCAAGACAATAAGAATATAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGACTACTGGATGTGATTCGATTTTCTCAAGACAATAAGAATATAT  250

seq1  ATGTAGCCCTGGTTGTCTGAAACTCACTGTAGACCAGGCTGGCCTCGAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCCCTGGTTGTCTGAAACTCACTGTAGACCAGGCTGGCCTCGAAC  300

seq1  TCAGAGATCAGCCTGCCTCTGCCTCCAGAGTGCTGGAATTAAAGGTGTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATCAGCCTGCCTCTGCCTCCAGAGTGCTGGAATTAAAGGTGTGT  350

seq1  GCCACCACTGCCCTGCATATGTATTTTTTAATGCCATCTCAAAATGGTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACTGCCCTGCATATGTATTTTTTAATGCCATCTCAAAATGGTAA  400

seq1  ATGTGCTGGCTAGTTTTATGTCAACTTGACACAAGCTAGAATCCTCAGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGGCTAGTTTTATGTCAACTTGACACAAGCTAGAATCCTCAGAG  450

seq1  AGGAGGGAGCCTTAATTGAGAAAATGTCTCCATAAGATTAGGCTATAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGAGCCTTAATTGAGAAAATGTCTCCATAAGATTAGGCTATAGGA  500

seq1  CATTTTCTTACTTAGTGATGGATGGAGAGGGCCCAGCCTGTTGCAGGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTACTTAGTGATGGATGGAGAGGGCCCAGCCTGTTGCAGGCAG  550

seq1  TGCAACCCTTGGGGTG  565
      ||||||||||||||||
seq2  TGCAACCCTTGGGGTG  566

seq1: chr9_107894522_107895568
seq2: B6Ng01-076H12.g_70_1120

seq1  GAATTCAGACTCTGTGGGGAAGCAGGTCTTGGGGCTAATTTTCCTGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTCTGTGGGGAAGCAGGTCTTGGGGCTAATTTTCCTGGGCA  50

seq1  CTGGGTTTGCTCTGTCTGCAAGCACAATGTGGCCAGTTTTACCATCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTGCTCTGTCTGCAAGCACAATGTGGCCAGTTTTACCATCTGTA  100

seq1  GCTTGTATCCCCTTAGGGTTGCAGTAATGAATGGAAGAATTCACTGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTATCCCCTTAGGGTTGCAGTAATGAATGGAAGAATTCACTGGAAA  150

seq1  CAGCGGAAGATGGGATTTTCCAGCAGCTCCTGGAGCCTGCCGGGGATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGAAGATGGGATTTTCCAGCAGCTCCTGGAGCCTGCCGGGGATCTA  200

seq1  ACTGCTCTGTCATGGGGTAGGTGGAGCCAGAGCTGGAGTCTCAGAAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTGTCATGGGGTAGGTGGAGCCAGAGCTGGAGTCTCAGAAGCCA  250

seq1  CCTGATGGCTATGTTTAAGCAACTAGCCAGGCAACAACAGAGTTAGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGGCTATGTTTAAGCAACTAGCCAGGCAACAACAGAGTTAGCCTG  300

seq1  AGAAACAGCTTCCTCCACCATTTCTTCAGGCTACCATGGCACTGCTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGCTTCCTCCACCATTTCTTCAGGCTACCATGGCACTGCTCAGG  350

seq1  CTCCTGGAGTTTCTTTTTGCTTTACTTATCCCTGGTAAGGAGCAGTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGAGTTTCTTTTTGCTTTACTTATCCCTGGTAAGGAGCAGTCAGA  400

seq1  TGTGTGTGTGGGGGACCCCAGTCTGGCAGTGAAGTTCTGACCTGTAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGGGGGACCCCAGTCTGGCAGTGAAGTTCTGACCTGTAGATA  450

seq1  AGCTAATGTGGAGGGCAGAGGCTAAGGAACCCCTGACCCTTGCTCCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATGTGGAGGGCAGAGGCTAAGGAACCCCTGACCCTTGCTCCTTCT  500

seq1  CTTGGCTGTTTCTTCAGTCACGTTCTTCATCTCTCTTCACTTGTCCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGTTTCTTCAGTCACGTTCTTCATCTCTCTTCACTTGTCCAGTG  550

seq1  TCACCTGTAGGAGACAAGGAAGGACTTTGGCTGCTTGGCCTCCAGATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGTAGGAGACAAGGAAGGACTTTGGCTGCTTGGCCTCCAGATGTG  600

seq1  GTCAGGCCCTAAAGAAAAAGGCTATTGCTGTTTTTCTAAATGTGGCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCCCTAAAGAAAAAGGCTATTGCTGTTTTTCTAAATGTGGCTTTC  650

seq1  TCCTAGTCCTCTACAGCCTGCCCTGGACTATGTATATTTCTGAGAACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTCCTCTACAGCCTGCCCTGGACTATGTATATTTCTGAGAACAAT  700

seq1  GGCCCTGGGACGGTCCTTCGGCCTTTCTCCTTCAACTGTTCCTCCTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGGACGGTCCTTCGGCCTTTCTCCTTCAACTGTTCCTCCTACAT  750

seq1  GCCCACCCTGGAGTTACTCAGTGTGAGACCACCTACCAGCTTCTTCAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCCTGGAGTTACTCAGTGTGAGACCACCTACCAGCTTCTTCAATA  800

seq1  AACCCAGCATGCATGGGGATAAGGGAGTCTACCTGGTGATGGTAAGGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCATGCATGGGGATAAGGGAGTCTACCTGGTGATGGTAAGGCCA  850

seq1  TGGATACAATTAGGGATTGTGGGGACCAAAGCCAGAAGTGGTCAG-AGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGATACAATTAGGGATTGTGGGGACCAAAGCCAGAAGTGGTCAGAAGAG  900

seq1  ACAGAAAGCC-TAGGCCCTAC-ACG-TCTTTTGTCGATCCACCACAGGTG  946
      |||||||||| |||||||||| ||| ||||||||||||||||||||||||
seq2  ACAGAAAGCCTTAGGCCCTACAACGTTCTTTTGTCGATCCACCACAGGTG  950

seq1  TCC-TTGAGTAGCTCTGCTCGGC-TGGATGCCCTTGCAGTGAACCAGTAT  994
      ||| || |||||||||||||||| || ||||||||||||||||||| | |
seq2  TCCTTTAAGTAGCTCTGCTCGGCTTGAATGCCCTTGCAGTGAACCA-TTT  999

seq1  GAGCTGCAGCTGCAGTACAGATGTGGTAACTTTGTGGTAGACGGATCAAT  1044
      ||||||||||||||||||| |||||||||| |||||| ||||||||||||
seq2  GAGCTGCAGCTGCAGTACAAATGTGGTAAC-TTGTGGGAGACGGATCAAT  1048

seq1  CTT  1047
      |||
seq2  CTT  1051