BAC Information

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BAC

Clone NameB6Ng01-077F08
Chromosome9 (Build37)
Map Location 5,944,391 - 5,944,769
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664889, Casp1, Casp4, Casp12, LOC547033, LOC100039361
Downstream geneLOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034, Dync2h1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077F08.bB6Ng01-077F08.g
ACCDH893338DH893339
length6491,209
definitionDH893338|Mus musculus domesticus DNA, BAC clone: B6Ng01-077F08, 5' end.DH893339|Mus musculus domesticus DNA, BAC clone: B6Ng01-077F08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaaaaaaggaatctcaaatggctgagaagcacttaacaaaatg
ttcaaaattcttagtcatcaggtaaatataaatcaaaacaattctgaggt
tccattttacaagcatcagaatggctaagaccaaaaactcaagagacagc
acatgctggagaggatgtggagcaaggggaacaacttctttatcactggt
gatagggcaaacttgtacaaccactttggaaatcaatttagtgctttctc
agaaaatagaagagtcctaccacaagacccagtttcaccactcctggaca
tattcccaaaagatgctcctacattaacaaaggacacttgctcaaccatg
ttcatggcagctttatttgtaatagaaactgcaaacaacctagatggcca
tcaactgaagaatggatgaagaaaatgtggtacatctacaaaataaattg
ctattcagccattaaaaaaagttaggtggaacaacaatatgaactaacca
gtaccccctagtgctcatgtctctagctgtataagtatcagaagatggct
tagtaggccatcagtggaaagagaggcccattggtcttgcaaactttata
tgcctcagtacaggacaatgccagggccaagaagtgggagtgggtgggt
gaattctttgtttagctctgtacccaatttttttaatgaggttatttgta
tttctggagtccagcttcttgtgatcttcatatatattggatattagtcc
cttgtcagatttaggattggtaaagatcctttcccaatctgtcagtcact
tttttgtcttattgacagtgtcttttgccttacagaagctttgcaatttt
atgaggtcccatttgttgattcttggtcttacagcacaagccatgccatt
gctgttctattcagaaaaatttcccctgtgcccatatcttcgaggctcat
ccccattttctcctctataagtgtcactgtctctggttttatttggaatt
ccttgatccacttagacttaaactttttacgaagagataagaatggatca
attcacagtcttctacatgttatctaccagatgagccagcaccattcgtt
gaaaatgctattttttttttatccactggatggttttagctcatttgtga
aagatcaagtgaacataggtgtgtgggttcatttctgggtcttcaatttt
attccattcttctacctctcagtcactgtacaagtaccgtgcagttttta
tcacaattgctctgtagtatagcttgaggtcagggatggtgattccacca
taggttcttttatccttgagaataggttttgctatcccaggttttttgtt
attccagatgaatttgcaaattgccctttctaactctctcaagaattgag
gtgaaattttgatggggattgcattgaatcagtagattgcttttggcaag
atagccattttgactatattattcctgtcaattcatgagcattggagatc
tttccattttctgagatctttgatttctttcttcagagacttgaagttct
tatcatacagatctttcactttcttatttaaagtcacaccaggtatttca
tattatttgtgactattgtgagagtttatttccctaatttttttctcagc
tgttgtctttgtgtagaggaaagcactgatgtttgattatttatatcagc
tacttcactgagctgttatcagctagagtccctgtttaattaggtcagtg
aatatacatacaactatggcaaagaattttgaactctcttttcccattga
tctgattctagtccaatgctgcagacttgatgtattgtaaagagggacaa
gaaggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5944391_5944769
seq2: B6Ng01-077F08.b_458_697 (reverse)

seq1  ACCCACCCACTCCCACTTCCTGGCCCTGACATTGCCCTATACTGGGGCAT  50
      ||||||||||||||||||| |||||||| ||||| ||| ||||| |||||
seq2  ACCCACCCACTCCCACTTCTTGGCCCTGGCATTGTCCTGTACTGAGGCAT  50

seq1  AGAACCTTCCCAAGACCAA-GGGCCTCTCCTCCCATTGATGACCAACTAG  99
      | ||  ||  ||||||||| ||||||||| | ||| ||||| || |||| 
seq2  ATAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCACTGATGGCCTACTAA  100

seq1  GCCATCCTCTGCTACACCTAGAGTCCAACCATGCATGTTCTTCCTTCTTC  149
      |||||| |||| |||                                   
seq2  GCCATCTTCTGATAC-----------------------------------  115

seq1  TTAAGCTTCATGTGGTCTGTGAATTATACCTTGGTTATTTGGAGTTTTGG  199
                             ||||||       |  | |||   || 
seq2  -----------------------TTATAC-------AGCTAGAGACATGA  135

seq1  GGCTAATATTCACTTATCAGTGAGTGCATACTATGTGTGCCCTTTTTGGG  249
      |         ||||        || |  ||||                  
seq2  G---------CACT--------AGGGGGTACT------------------  150

seq1  ATTGGGTTACCTCACTCAGGATGATATTTTCTAGTTCTCTTCATTTGCCT  299
          |||||  ||            || || | ||||    ||    |||
seq2  ----GGTTAGTTC------------ATATTGTTGTTC----CA----CCT  176

seq1  AAAAATTTCATGAATTCATCATTTTTAATAGCTGAGTAGTACTCCATTGT  349
      ||              | |  |||||||| ||||| ||| | |  ||| |
seq2  AA--------------CTT--TTTTTAATGGCTGAATAGCAATTTATTTT  210

seq1  ATAAATGTACCACATTTTCTGTATCCATTC  379
       || ||||||||||||||||  ||||||||
seq2  GTAGATGTACCACATTTTCTTCATCCATTC  240