BAC Information

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BAC

Clone NameB6Ng01-077H05
Chromosome9 (Build37)
Map Location 91,142,823 - 91,275,777
singlet/doubletdoublet
Overlap geneZic1, Zic4
Upstream geneTbc1d2b, LOC100039777, LOC100039925, EG434428, LOC621576
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077H05.bB6Ng01-077H05.g
ACCDH893422DH893423
length1,143729
definitionDH893422|Mus musculus domesticus DNA, BAC clone: B6Ng01-077H05, 5' end.DH893423|Mus musculus domesticus DNA, BAC clone: B6Ng01-077H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,142,823 - 91,143,963)(91,275,049 - 91,275,777)
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tcaaatgctttctccacatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatactgggttatgatgatggatttctgtatattaaacc
atccctgcatccctggaatgaaacctacttggtcaggatggatgattgtt
ttgatgtgttcttggatttggttagcgagaattttattgagtatttttgc
atccatattcataagggaatttggtcggaagttctctatctttgttgggt
ctttctgtggtttaggtatctgagtaattgtggcttcatagaatgagttg
ggtagagtacacagtcatgtgttcttattgtggttgattttgttatattc
actgtacttgttagcattatagaaacactaacccagttttgctaatacaa
aacttattttttaatcctatatttaacgagcatatgtgcttgaatatttt
acctatattacaaaatataatatttttacttagataatggagaatagact
tgatacacattctaattagctagtgttacattcactaattattaggtggt
acagaaattgaacatcatcaaatagtacaattttttcttcaattaaaaac
atttccagtgaaacaaagattctctagagtcattttatattcttctcctg
taagactataataaagactgaaacgaatttaccggtgcacacaaacatta
tttaagtgttaaatatttggagctacaataaaactcaatgttatattgag
accttgcctaacatttacaaggctgtgggttctagaaaagtatgaaaaat
atatgaaagttgcaactaattttagttgtcaactctattgcatccagaat
caattaggagacacgcttcaggatagtctttaagggaacttcctgtaata
actacctgaaaagagaaagcctccttcataatgggtgacacttcttgtgg
tggccaagacataagatttccatgggaaaagctgttatactggtgccttc
ctcccctccttgctagtaggtgcatttatcctggtgttggcatcaactct
tggcatcacactgaacattgtttatccagccttccttcagttt
gaattctgccttgagtccaagcaaacctgagagccagccaggcacacttt
tgcttctctgatgtaggtcgattacgctaagaatttaaccattttctgct
tcacagacttcaaacagtgggccggcaaagagcagtataagtttgtttgc
ttcaaaatccctgtcattaaagatgagttctttctccagccccggattgc
gcatccactttcccggtgctggcagccagcctctggagcagctagtctga
ggtctggaatcctggtcttacttattcctctgtccctggggatataactc
gggaagagaggggaccaaagggatgagagagagtggggggaagagctcat
aacgtgctttagaaagccgtacaagatgtttgctgacatgctaggggaat
aaagaacaagagcccaaactggactttggtcttgcctcagcctatgccag
tgttctaccactaaaacctcatggagaaggcagtttgtgggaagatttag
caagcttcttaccgggtactgcaactatcggggacttggactctgaaaag
ggttgctgttctaacaagaattgtagaaagggaagctaccgcctgcaaaa
ctagagtaccaagatggaattcttctgatctctgcatcattcttcccatt
tcccgcctccaagatgggggaggggagaagacgctgacttcttaaacttc
aagcgaggaggggtgtgtgtgtggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_91142823_91143963
seq2: B6Ng01-077H05.b_44_1186

seq1  GAATTCCTGATCTTTCCAAGACTTTTATCATGAATGGGTGTTGGATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTTTCCAAGACTTTTATCATGAATGGGTGTTGGATTTTG  50

seq1  TCAAATGCTTTCTCCACATCTAACGAGATGATCATGTGGTTTTTGTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCTTTCTCCACATCTAACGAGATGATCATGTGGTTTTTGTCTTT  100

seq1  GAGTTTGTTTATATACTGGGTTATGATGATGGATTTCTGTATATTAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTTTATATACTGGGTTATGATGATGGATTTCTGTATATTAAACC  150

seq1  ATCCCTGCATCCCTGGAATGAAACCTACTTGGTCAGGATGGATGATTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGCATCCCTGGAATGAAACCTACTTGGTCAGGATGGATGATTGTT  200

seq1  TTGATGTGTTCTTGGATTTGGTTAGCGAGAATTTTATTGAGTATTTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGTTCTTGGATTTGGTTAGCGAGAATTTTATTGAGTATTTTTGC  250

seq1  ATCCATATTCATAAGGGAATTTGGTCGGAAGTTCTCTATCTTTGTTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATATTCATAAGGGAATTTGGTCGGAAGTTCTCTATCTTTGTTGGGT  300

seq1  CTTTCTGTGGTTTAGGTATCTGAGTAATTGTGGCTTCATAGAATGAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTGGTTTAGGTATCTGAGTAATTGTGGCTTCATAGAATGAGTTG  350

seq1  GGTAGAGTACACAGTCATGTGTTCTTATTGTGGTTGATTTTGTTATATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGTACACAGTCATGTGTTCTTATTGTGGTTGATTTTGTTATATTC  400

seq1  ACTGTACTTGTTAGCATTATAGAAACACTAACCCAGTTTTGCTAATACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACTTGTTAGCATTATAGAAACACTAACCCAGTTTTGCTAATACAA  450

seq1  AACTTATTTTTTAATCCTATATTTAACGAGCATATGTGCTTGAATATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATTTTTTAATCCTATATTTAACGAGCATATGTGCTTGAATATTTT  500

seq1  ACCTATATTACAAAATATAATATTTTTACTTAGATAATGGAGAATAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATATTACAAAATATAATATTTTTACTTAGATAATGGAGAATAGACT  550

seq1  TGATACACATTCTAATTAGCTAGTGTTACATTCACTAATTATTAGGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACACATTCTAATTAGCTAGTGTTACATTCACTAATTATTAGGTGGT  600

seq1  ACAGAAATTGAACATCATCAAATAGTACAATTTTTTCTTCAATTAAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATTGAACATCATCAAATAGTACAATTTTTTCTTCAATTAAAAAC  650

seq1  ATTTCCAGTGAAACAAAGATTCTCTAGAGTCATTTTATATTCTTCTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGTGAAACAAAGATTCTCTAGAGTCATTTTATATTCTTCTCCTG  700

seq1  TAAGACTATAATAAAGACTGAAACGAATTTACCGGTGCACACAAACATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTATAATAAAGACTGAAACGAATTTACCGGTGCACACAAACATTA  750

seq1  TTTAAGTGTTAAATATTTGGAGCTACAATAAAACTCAATGTTATATTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTGTTAAATATTTGGAGCTACAATAAAACTCAATGTTATATTGAG  800

seq1  ACCTTGCCTAACATTTACAAGGCTGTGGGTTCTAGAAAAGTATGAAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCCTAACATTTACAAGGCTGTGGGTTCTAGAAAAGTATGAAAAAT  850

seq1  ATATGAAAGTTGCAACTAATTTTAGTTGTCAACTCTATTGCATCCAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAGTTGCAACTAATTTTAGTTGTCAACTCTATTGCATCCAGAAT  900

seq1  CAATTAGGAGACACGCTTCAGGATAGGTCTTTAAGGGAACTTCCTGTAAT  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAATTAGGAGACACGCTTCAGGATA-GTCTTTAAGGGAACTTCCTGTAAT  949

seq1  AACTACCTGAAAAGAGAAAGCCTCCTTCATAATGGGTGACACTTCTTGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACCTGAAAAGAGAAAGCCTCCTTCATAATGGGTGACACTTCTTGTG  999

seq1  GTGGCCAAGACATAAGGATTTCCATGGGAAAAGCTGTTATACT-GTGCCT  1049
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  GTGGCCAAGACATAA-GATTTCCATGGGAAAAGCTGTTATACTGGTGCCT  1048

seq1  TCCTTCTCTCCTTGCTAGTAAGTGCATCTATCCTGTTGTTGCTATCAACT  1099
      |||| | ||||||||||||| |||||| ||||||| |||||  |||||||
seq2  TCCTCCCCTCCTTGCTAGTAGGTGCATTTATCCTGGTGTTGGCATCAACT  1098

seq1  C-TGGCATCCAACACTG-ACATTG-TTATCCAG-CTTCC-TCAGTTT  1141
      | |||||||  |||||| |||||| |||||||| ||||| |||||||
seq2  CTTGGCATC--ACACTGAACATTGTTTATCCAGCCTTCCTTCAGTTT  1143

seq1: chr9_91275049_91275777
seq2: B6Ng01-077H05.g_68_796 (reverse)

seq1  CCCCCCCACACACACACCCCTCCTCGCTTGAAGTTTAAGAAGTCAGCGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCACACACACACCCCTCCTCGCTTGAAGTTTAAGAAGTCAGCGTC  50

seq1  TTCTCCCCTCCCCCATCTTGGAGGCGGGAAATGGGAAGAATGATGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCTCCCCCATCTTGGAGGCGGGAAATGGGAAGAATGATGCAGAG  100

seq1  ATCAGAAGAATTCCATCTTGGTACTCTAGTTTTGCAGGCGGTAGCTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAGAATTCCATCTTGGTACTCTAGTTTTGCAGGCGGTAGCTTCCC  150

seq1  TTTCTACAATTCTTGTTAGAACAGCAACCCTTTTCAGAGTCCAAGTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACAATTCTTGTTAGAACAGCAACCCTTTTCAGAGTCCAAGTCCCC  200

seq1  GATAGTTGCAGTACCCGGTAAGAAGCTTGCTAAATCTTCCCACAAACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTGCAGTACCCGGTAAGAAGCTTGCTAAATCTTCCCACAAACTGC  250

seq1  CTTCTCCATGAGGTTTTAGTGGTAGAACACTGGCATAGGCTGAGGCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCATGAGGTTTTAGTGGTAGAACACTGGCATAGGCTGAGGCAAGA  300

seq1  CCAAAGTCCAGTTTGGGCTCTTGTTCTTTATTCCCCTAGCATGTCAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTCCAGTTTGGGCTCTTGTTCTTTATTCCCCTAGCATGTCAGCAA  350

seq1  ACATCTTGTACGGCTTTCTAAAGCACGTTATGAGCTCTTCCCCCCACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTGTACGGCTTTCTAAAGCACGTTATGAGCTCTTCCCCCCACTCT  400

seq1  CTCTCATCCCTTTGGTCCCCTCTCTTCCCGAGTTATATCCCCAGGGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATCCCTTTGGTCCCCTCTCTTCCCGAGTTATATCCCCAGGGACAG  450

seq1  AGGAATAAGTAAGACCAGGATTCCAGACCTCAGACTAGCTGCTCCAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAAGTAAGACCAGGATTCCAGACCTCAGACTAGCTGCTCCAGAGG  500

seq1  CTGGCTGCCAGCACCGGGAAAGTGGATGCGCAATCCGGGGCTGGAGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGCCAGCACCGGGAAAGTGGATGCGCAATCCGGGGCTGGAGAAAG  550

seq1  AACTCATCTTTAATGACAGGGATTTTGAAGCAAACAAACTTATACTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATCTTTAATGACAGGGATTTTGAAGCAAACAAACTTATACTGCTC  600

seq1  TTTGCCGGCCCACTGTTTGAAGTCTGTGAAGCAGAAAATGGTTAAATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCGGCCCACTGTTTGAAGTCTGTGAAGCAGAAAATGGTTAAATTCT  650

seq1  TAGCGTAATCGACCTACATCAGAGAAGCAAAAGTGTGCCTGGCTGGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTAATCGACCTACATCAGAGAAGCAAAAGTGTGCCTGGCTGGCTCT  700

seq1  CAGGTTTGCTTGGACTCAAGGCAGAATTC  729
      |||||||||||||||||||||||||||||
seq2  CAGGTTTGCTTGGACTCAAGGCAGAATTC  729