BAC Information

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BAC

Clone NameB6Ng01-078I21
Chromosome9 (Build37)
Map Location 10,042,286 - 10,141,764
singlet/doubletdoublet
Overlap geneCntn5
Upstream gene9030420J04Rik
Downstream geneLOC665154, LOC100039970, LOC665178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078I21.bB6Ng01-078I21.g
ACCDH894219DH894220
length1,213959
definitionDH894219|Mus musculus domesticus DNA, BAC clone: B6Ng01-078I21, 5' end.DH894220|Mus musculus domesticus DNA, BAC clone: B6Ng01-078I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,140,533 - 10,141,764)(10,042,286 - 10,043,249)
sequence
gaattcatttaacttaccgatatatccaaatacagaaatataattagaat
gttataagtaccagctaacatctttgagttgctaactaaagagtcacttc
ctgtcctcctcacctgtcccacacaggcatgggttaactttctactcatg
aatattttcatactgacttttccccaaaggaatagttacaaatacatttc
agcccagttaatattaaaactttagtttatcattaataaatatctagcta
acagagctacagtaaaaattaatgagggtgagaaatttatattttaaaat
gtgttttcaagttcagagagggggttgtaaataaacccaaccctgatata
ttctgtccagtagtgaaccttagtggttatcaagatgatacttgaaaaac
tatattttctttctcgaatctatgttcatcatgagggtgatttctttaca
gagtggaaggatctccactcagacaagtgagaacatacaatatcatacat
tgccactcgttagctagtgccacctggaagggaatgtaaatggataacgt
aacttttcaataccaaacccaaagctcactgcagtctctccagagttggt
aattttttttccattttagaaatgattcatgtcagcaagtcaaacagaaa
atgaatcaagagtaaaatctcctcatgctgtctctagcttcagaatatat
ctttatatgcaatcctttgtaaattgatagttcatatctaaatttgaaca
cattggttttcagggcatttagatggtttagatccaaaatattccattcg
ttattcgtgaagcagctgattaaaataacctccttaacttttgagagatt
ttattacttgtagactttatatctaagccctttaatttaacctttcattt
tcatataaaactcaaaaattacctctctgcgtttttcataactttttctc
taaagtaaaattaaccttagactttaaaaccacattttactagttttaaa
tatctaatgaaattatttgaataatcactaacttcccagtatagcctaaa
cttatttcattagtctatgaggttttgcccataataactttattaattta
ttttaatatatctgatgaggatgaattaggcctgaatgagtcatggtggt
aaatattagattggttaaatacgtgttaacatatatcttcaaaccataga
cattctctctctc
gaattcagtttagtgatgtgtgagacaggcctcatcaggatgttgcgtaa
tgaggcagaggctaggatgcatgtagaatgtgttctagtagtgaggctac
atctttcttttccatacaaggacaactgctgtgttctttggctccttttt
ctatccacagtgccaaatgtaatatctgatcctaataggttcactgctca
cataagcaggacatgaaagccttgatcagttttggttcggtttggttttt
gatttttgttgttattgttgtttctttttttttttctttttctttttctt
tttctttttttttttttttttttttttttttttttttttttttttgcctg
caactttaaaacaagtgttcccaggggaaaaatgcataatcccccttaaa
aaggggaaaaaaaaaaaaaagggacccccttgaaaaccccccctctggga
caaccttagtgggctctgggattgccccttgaaactccccatgtatgggt
ctgggtatgtggggccagttctgacttttcataaacatacttatctgtat
aacacaaaaacattttcacaatttcattctggactacccccatctctcac
ttctgccctctatgaattaactcagatataatacctacaagcaaatatca
cttcaaattttgctttcaaactcaagcaaatcagtgcattttctaaccaa
gagtttactaaaggaaaattttacctggacttgaaagggaaaacttcttg
cctactcacacattctttttataatttttagaaaacctttttttttccca
gaaaagtgtaaaatttcaatgttcctaaatgactttttaggtacattacc
gtcacagcagcttaatatatttttttattcaaacccccacagaggtgttt
gccagcttgccaaatctggatataacgctgcctcttgcactgagaggtta
aacgcttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_10140533_10141764
seq2: B6Ng01-078I21.b_42_1254 (reverse)

seq1  GAGAGAGAGAATTGCTATGTGTATGGAAGATATAATGATAAACAACCTTA  50
      ||||||||||||  ||||| || | |||||||| ||| | ||||  | ||
seq2  GAGAGAGAGAATGTCTATG-GT-TTGAAGATAT-ATG-TTAACA--CGTA  44

seq1  TTTTATAACAAAATCTAATATTTTTACAACCATTGAACTCATTCA-GACT  99
      ||   ||||  |||||||||  ||||| |||||   ||||||||| | ||
seq2  TT---TAAC-CAATCTAATA--TTTACCACCAT--GACTCATTCAGGCCT  86

seq1  AATATCACTCCTTCATTCAGATTAATATTAAAATAAATTAATAAAGTTAT  149
      ||| ||| ||| ||| ||||||  ||||||||||||||||||||||||||
seq2  AAT-TCA-TCC-TCA-TCAGAT--ATATTAAAATAAATTAATAAAGTTAT  130

seq1  TATGGGCAAAACCTCATAGACTAATGAAATAAGTTTAGGCTATACTGTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||| | 
seq2  TATGGGCAAAACCTCATAGACTAATGAAATAAGTTTAGGCTATACTGGGA  180

seq1  AGTTAGTGATTATTCAAATAATTTCATTAGATATTTAAAACTAGTAAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTGATTATTCAAATAATTTCATTAGATATTTAAAACTAGTAAAAT  230

seq1  GTGGTTTTAAAGTCTAAGGTTAATTTTACTTTAGAGAAAAAGTTATGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTTAAAGTCTAAGGTTAATTTTACTTTAGAGAAAAAGTTATGAAA  280

seq1  AACGCAGAGAGGTAATTTTTGAGTTTTATATGAAAATGAAAGGTTAAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCAGAGAGGTAATTTTTGAGTTTTATATGAAAATGAAAGGTTAAATT  330

seq1  AAAGGGCTTAGATATAAAGTCTACAAGTAATAAAATCTCTCAAAAGTTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTTAGATATAAAGTCTACAAGTAATAAAATCTCTCAAAAGTTAA  380

seq1  GGAGGTTATTTTAATCAGCTGCTTCACGAATAACGAATGGAATATTTTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTATTTTAATCAGCTGCTTCACGAATAACGAATGGAATATTTTGG  430

seq1  ATCTAAACCATCTAAATGCCCTGAAAACCAATGTGTTCAAATTTAGATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAACCATCTAAATGCCCTGAAAACCAATGTGTTCAAATTTAGATAT  480

seq1  GAACTATCAATTTACAAAGGATTGCATATAAAGATATATTCTGAAGCTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATCAATTTACAAAGGATTGCATATAAAGATATATTCTGAAGCTAG  530

seq1  AGACAGCATGAGGAGATTTTACTCTTGATTCATTTTCTGTTTGACTTGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCATGAGGAGATTTTACTCTTGATTCATTTTCTGTTTGACTTGCT  580

seq1  GACATGAATCATTTCTAAAATGGAAAAAAAATTACCAACTCTGGAGAGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAATCATTTCTAAAATGGAAAAAAAATTACCAACTCTGGAGAGAC  630

seq1  TGCAGTGAGCTTTGGGTTTGGTATTGAAAAGTTACGTTATCCATTTACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGAGCTTTGGGTTTGGTATTGAAAAGTTACGTTATCCATTTACAT  680

seq1  TCCCTTCCAGGTGGCACTAGCTAACGAGTGGCAATGTATGATATTGTATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCAGGTGGCACTAGCTAACGAGTGGCAATGTATGATATTGTATG  730

seq1  TTCTCACTTGTCTGAGTGGAGATCCTTCCACTCTGTAAAGAAATCACCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTTGTCTGAGTGGAGATCCTTCCACTCTGTAAAGAAATCACCCT  780

seq1  CATGATGAACATAGATTCGAGAAAGAAAATATAGTTTTTCAAGTATCATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGAACATAGATTCGAGAAAGAAAATATAGTTTTTCAAGTATCATC  830

seq1  TTGATAACCACTAAGGTTCACTACTGGACAGAATATATCAGGGTTGGGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAACCACTAAGGTTCACTACTGGACAGAATATATCAGGGTTGGGTT  880

seq1  TATTTACAACCCCCTCTCTGAACTTGAAAACACATTTTAAAATATAAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACAACCCCCTCTCTGAACTTGAAAACACATTTTAAAATATAAATT  930

seq1  TCTCACCCTCATTAATTTTTACTGTAGCTCTGTTAGCTAGATATTTATTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCCTCATTAATTTTTACTGTAGCTCTGTTAGCTAGATATTTATTA  980

seq1  ATGATAAACTAAAGTTTTAATATTAACTGGGCTGAAATGTATTTGTAACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAACTAAAGTTTTAATATTAACTGGGCTGAAATGTATTTGTAACT  1030

seq1  ATTCCTTTGGGGAAAAGTCAGTATGAAAATATTCATGAGTAGAAAGTTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTGGGGAAAAGTCAGTATGAAAATATTCATGAGTAGAAAGTTAA  1080

seq1  CCCATGCCTGTGTGGGACAGGTGAGGAGGACAGGAAGTGACTCTTTAGTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCCTGTGTGGGACAGGTGAGGAGGACAGGAAGTGACTCTTTAGTT  1130

seq1  AGCAACTCAAAGATGTTAGCTGGTACTTATAACATTCTAATTATATTTCT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTCAAAGATGTTAGCTGGTACTTATAACATTCTAATTATATTTCT  1180

seq1  GTATTTGGATATATCGGTAAGTTAAATGAATTC  1232
      |||||||||||||||||||||||||||||||||
seq2  GTATTTGGATATATCGGTAAGTTAAATGAATTC  1213

seq1: chr9_10042286_10043249
seq2: B6Ng01-078I21.g_68_1026

seq1  GAATTCAGTTTAGTGATGTGTGAGACAGGCCTCATCAGGATGTTGCGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTAGTGATGTGTGAGACAGGCCTCATCAGGATGTTGCGTAA  50

seq1  TGAGGCAGAGGCTAGGATGCATGTAGAATGTGTTCTAGTAGTGAGGCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGAGGCTAGGATGCATGTAGAATGTGTTCTAGTAGTGAGGCTAC  100

seq1  ATCTTTCTTTTCCATACAAGGACAACTGCTGTGTTCTTTGGCTCCTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTTTTCCATACAAGGACAACTGCTGTGTTCTTTGGCTCCTTTTT  150

seq1  CTATCCACAGTGCCAAATGTAATATCTGATCCTAATAGGTTCACTGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCACAGTGCCAAATGTAATATCTGATCCTAATAGGTTCACTGCTCA  200

seq1  CATAAGCAGGACATGAAAGCCTTGATCAGTTTTGGTTCGGTTTGGTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCAGGACATGAAAGCCTTGATCAGTTTTGGTTCGGTTTGGTTTTT  250

seq1  GATTTTTGTTGTTATTGTTGTTTCTTTTTTTTTTTCTTTTTCTTTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGTTGTTATTGTTGTTTCTTTTTTTTTTTCTTTTTCTTTTTCTT  300

seq1  TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTT  350
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTC-TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCT  349

seq1  GCAACTTTAGAGCAAGTGTTCACAGGGCAAAAGTGCATAGTCACTCTTAG  400
      ||||||||| | ||||||||| ||||| |||| |||||| || | |||| 
seq2  GCAACTTTAAAACAAGTGTTCCCAGGGGAAAAATGCATAATCCCCCTTAA  399

seq1  AAAGTGGAGATAGAAAACAGAGGGACCTCCTTGAAGACTCCCACTCTGGG  450
      |||| ||| | | |||| | ||||||| ||||||| || ||| |||||||
seq2  AAAGGGGAAAAAAAAAAAAAAGGGACCCCCTTGAAAACCCCCCCTCTGGG  449

seq1  ACAACCTTAGTGTGCTCTGTGATTGCCACTTGAAGCTCCTCATGTATGGT  500
      |||||||||||| |||||| ||||||| |||||| |||| ||||||||| 
seq2  ACAACCTTAGTGGGCTCTGGGATTGCCCCTTGAAACTCCCCATGTATGGG  499

seq1  TCTGGCTATGTGGGGCCAGTTCTGACTTTCCATAGACATACTTATCTGTA  550
      ||||| ||||||||||||||||||||||| |||| |||||||||||||||
seq2  TCTGGGTATGTGGGGCCAGTTCTGACTTTTCATAAACATACTTATCTGTA  549

seq1  TAACACAATAGCATTTTCACAATTCCATCCTGCACTACCCCCATCTCTCA  600
      |||||||| | ||||||||||||| ||| ||| |||||||||||||||||
seq2  TAACACAAAAACATTTTCACAATTTCATTCTGGACTACCCCCATCTCTCA  599

seq1  CTTCTGCCCTCTATGAATTAACTCAGATATAATACCTACAAGCAAATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCCTCTATGAATTAACTCAGATATAATACCTACAAGCAAATATC  649

seq1  ACTTCAAATTTTGCTTTCAAACTCAAGCAAATCAGTGCATTTTCTAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAATTTTGCTTTCAAACTCAAGCAAATCAGTGCATTTTCTAACCA  699

seq1  AGAGTTTACT-AAGGAAAATTTTACTTGAACTTGAAAGGAAAAACTTC-T  748
      |||||||||| |||||||||||||| || |||||||||| |||||||| |
seq2  AGAGTTTACTAAAGGAAAATTTTACCTGGACTTGAAAGGGAAAACTTCTT  749

seq1  GCCTACTCACACATCC--TTTATTATTTTTAGAAAACC-TTTTTTTTCCC  795
      |||||||||||||| |  ||||| |||||||||||||| |||||||||||
seq2  GCCTACTCACACATTCTTTTTATAATTTTTAGAAAACCTTTTTTTTTCCC  799

seq1  AGAAAAGTGTAAAATTTCAATGTTCTTAAAATGACTTTTATAGGTAACAT  845
      ||||||||||||||||||||||||| | ||||||||||| ||||| ||||
seq2  AGAAAAGTGTAAAATTTCAATGTTCCT-AAATGACTTTT-TAGGT-ACAT  846

seq1  TACGGTCACAGCAGCTTAAATATAATTTTTATATTCAAACCCCCACAGAG  895
      ||| ||||||||||||| ||||| |||||| |||||||||||||||||||
seq2  TACCGTCACAGCAGCTT-AATAT-ATTTTTTTATTCAAACCCCCACAGAG  894

seq1  GTGTTTGCCAAGCTTGCAAAAATACTGAATATAAACGCTGCCTC-TGCAC  944
      ||||||||| ||||||| |||   ||| |||| ||||||||||| |||||
seq2  GTGTTTGCC-AGCTTGCCAAA--TCTGGATAT-AACGCTGCCTCTTGCAC  940

seq1  TGAGAGGTTTAAACGCTTGC  964
      ||||||| ||||||||||||
seq2  TGAGAGG-TTAAACGCTTGC  959