BAC Information

Click to search

BAC

Clone NameB6Ng01-080E21
Chromosome9 (Build37)
Map Location 42,198,122 - 42,360,822
singlet/doubletdoublet
Overlap geneTecta, Tbcel, Grik4
Upstream geneLOC100042464, EG667566, 6720432D03Rik, Sorl1, Sc5d
Downstream geneArhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080E21.bB6Ng01-080E21.g
ACCDH895480DH895481
length1,1791,155
definitionDH895480|Mus musculus domesticus DNA, BAC clone: B6Ng01-080E21, 5' end.DH895481|Mus musculus domesticus DNA, BAC clone: B6Ng01-080E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,198,122 - 42,199,303)(42,359,673 - 42,360,822)
sequence
gaattcagagagctccttaggacacttcctggaggaggcagctggagaca
gttaggagccaccctgaagcgttcactgtgatccattgctctgaggctta
ggaggcctgaatctctattatggtcaccttggaacatagatggcacttgg
gcgggggttattggggattaagaaatagctgagtacaggactgacacata
gttaaaagttcagtaaaaactggctctcctgaaacacatccatttccttt
tcagctgggagtgtcttgtctaaagatctctctaccccttgttttagtct
tgggtggtcctgggtggaataggtaggcccatttcaaaggtagggatgga
tggatggacactctgctgttctatagaatccatcatcttttcctttccct
ctaaaagctcaaagcccttcaaggtttcatcgtccgtcctcacagaaaga
gatcgcgcttgctttagaaaccccatccaaactacaaagcagaaagcacc
taaattatcctggcaatttttacagccagcagagggtttaatgggggaaa
tggtggtcagcgtttgatgggcgtcccttttctcccctacccctttcact
gacactaaaatttatcgatcgctggcaccctgcatccctacgctgtaaga
tatgaggcttaaaggacataaaacatcacccgaggagtctttagcgatcc
ataacgtgacagagggagacacatgcttctttagaggggttatttctagc
ccatgcatctggtgcttaaacatgtgtctttcttgttctgcaggacctct
tagcaataaagtgcttcgagctgctagacagacgatgctaaaacccatcc
ccattgtgttcctcgctatgaattgcaagaccagcactttttaacctctc
tctgctacacaagaatttctgtcccacccccgaacagtcaactcattgcc
aggaaagcagatgggattacaaataacccctaaagaagagaggaatagat
tttttttttaaagtttctctgctaactaggaacaacagttgaagagggtg
gtgattttgacttcaacgtcctcacactatcacgggtcaccaaacagtct
gatgctttcatcagactggggtttgtccctttaggcgaaggtgattatcc
tatgaaattacgaagataatcttttttat
gaattcatgtacatttatcgagaggcagtctgcaaccaagcgtagccccg
agagtggaccaagctagtgatttctactgcagtacaaaagtagcaaaggt
ggtcttctttgagtccttcatcacctgtgtgggttcttcacactctgcat
ctttctgtgtctgccacgggatgctagggcgatgagtaagacagtcagcc
tgtggtagacattgcaatgaacaaccgtggacccagcttctgttgcccct
gaaccccttgtttcttgttacaagattgatgtaatgatgggagcaaacac
actcatgatctggtctctaacctgccccccttctcctgttgctgctgctg
cttctgcttctcctcctcctcccccctcctctttctgctaatgctgcttc
tccttttcttgctcctcctcctcctgttcctttccctcttttgccgtcct
ttgcctcttcttcagactcattttcccaaccagcctgatcaagcgtcctc
tgaacatcaacaaccattcatgtactgggagaaaatgcccttggattctc
cctggcctgtgctatacatggaaagaaaattattttcataaaggcttcct
aagaggttctggtaacattgatgaaagacggcaggtctcaagaatgactg
cctataagcagggcaagtggtaaagcaactctgtgtcccttttgtgccag
gggaaagtaaaattcttccctagggcattgaggatgctcctcctggttct
ctgagaggaaatgagaagccacccataaaagctgaagtcactgaggaata
aaggctatgcaggtaccatggggtcactcacacagaaagctatcgaggca
ggcactgcatacaggtagtagtgcttttatgactgatataactttaagtg
ttgaaagcagaccctactcatagattgtctaaatgtgatattgacttcta
gttacattcacagacttctggattctgagatcattaaaaattaaagcatt
tccgtttcgaatgggccttagaaagcatctagcctggttgtttttgtagt
aaaccagaagaaattaagctgacacgtaacgttgccttggaaagagacac
ccccaccttgtagtgcatcttttgtctcagcctctgtgcgtcgaaaccgt
ctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_42198122_42199303
seq2: B6Ng01-080E21.b_40_1218

seq1  GAATTCAGAGAGCTCCTTAGGACACTTCCTGGAGGAGGCAGCTGGAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGCTCCTTAGGACACTTCCTGGAGGAGGCAGCTGGAGACA  50

seq1  GTTAGGAGCCACCCTGAAGCGTTCACTGTGATCCATTGCTCTGAGGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAGCCACCCTGAAGCGTTCACTGTGATCCATTGCTCTGAGGCTTA  100

seq1  GGAGGCCTGAATCTCTATTATGGTCACCTTGGAACATAGATGGCACTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCTGAATCTCTATTATGGTCACCTTGGAACATAGATGGCACTTGG  150

seq1  GCGGGGGTTATTGGGGATTAAGAAATAGCTGAGTACAGGACTGACACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGGTTATTGGGGATTAAGAAATAGCTGAGTACAGGACTGACACATA  200

seq1  GTTAAAAGTTCAGTAAAAACTGGCTCTCCTGAAACACATCCATTTCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGTTCAGTAAAAACTGGCTCTCCTGAAACACATCCATTTCCTTT  250

seq1  TCAGCTGGGAGTGTCTTGTCTAAAGATCTCTCTACCCCTTGTTTTAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGGGAGTGTCTTGTCTAAAGATCTCTCTACCCCTTGTTTTAGTCT  300

seq1  TGGGTGGTCCTGGGTGGAATAGGTAGGCCCATTTCAAAGGTAGGGATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGTCCTGGGTGGAATAGGTAGGCCCATTTCAAAGGTAGGGATGGA  350

seq1  TGGATGGACACTCTGCTGTTCTATAGAATCCATCATCTTTTCCTTTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGACACTCTGCTGTTCTATAGAATCCATCATCTTTTCCTTTCCCT  400

seq1  CTAAAAGCTCAAAGCCCTTCAAGGTTTCATCGTCCGTCCTCACAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGCTCAAAGCCCTTCAAGGTTTCATCGTCCGTCCTCACAGAAAGA  450

seq1  GATCGCGCTTGCTTTAGAAACCCCATCCAAACTACAAAGCAGAAAGCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGCGCTTGCTTTAGAAACCCCATCCAAACTACAAAGCAGAAAGCACC  500

seq1  TAAATTATCCTGGCAATTTTTACAGCCAGCAGAGGGTTTAATGGGGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATCCTGGCAATTTTTACAGCCAGCAGAGGGTTTAATGGGGGAAA  550

seq1  TGGTGGTCAGCGTTTGATGGGCGTCCCTTTTCTCCCCTACCCC-TTCACT  599
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGTGGTCAGCGTTTGATGGGCGTCCCTTTTCTCCCCTACCCCTTTCACT  600

seq1  GACACTAAAATTTATCGATCGCTGGCACCCTGCATCCCTACGCTGTAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTAAAATTTATCGATCGCTGGCACCCTGCATCCCTACGCTGTAAGA  650

seq1  TATGAGGCTTAAAGGACATAAAACATCACCCGAGGAGTCTTTAGCGATCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGCTTAAAGGACATAAAACATCACCCGAGGAGTCTTTAGCGATCC  700

seq1  ATAACGTGACAGAGGGAGACACATGCTTCTTTAGAGGGGTTATTTCTAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACGTGACAGAGGGAGACACATGCTTCTTTAGAGGGGTTATTTCTAGC  750

seq1  CCATGCATCTGGTGCTTAAACATGTGTCTTTC-TGTTCTGCAGGACCTCT  798
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCATGCATCTGGTGCTTAAACATGTGTCTTTCTTGTTCTGCAGGACCTCT  800

seq1  TAGCAATAAAGTGCTTCGAGCTGCTAGACAGACGATGCTAAAACCCATCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATAAAGTGCTTCGAGCTGCTAGACAGACGATGCTAAAACCCATCC  850

seq1  CCATTGTG-TCCTCGCTATGAATTGCAAGACCAGCACTTTTTAACCTCTC  897
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTGTTCCTCGCTATGAATTGCAAGACCAGCACTTTTTAACCTCTC  900

seq1  TCTGCTACACAAGAATTTCTGTCCCACCCCCGAACAGTCAACTCATTGCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTACACAAGAATTTCTGTCCCACCCCCGAACAGTCAACTCATTGCC  950

seq1  AGGAAAGCAGATGGAATTACAAATAA-CCCTAAGAAAGAAGAGG-ATAGA  995
      |||||||||||||| ||||||||||| ||||||  ||| ||||| |||||
seq2  AGGAAAGCAGATGGGATTACAAATAACCCCTAAAGAAG-AGAGGAATAGA  999

seq1  TTTTTTTTTTAAAGTTTCTCTGCTTACTAGGAAACTACAGTTGAAGATGG  1045
      |||||||||||||||||||||||| |||||| ||| ||||||||||| ||
seq2  TTTTTTTTTTAAAGTTTCTCTGCTAACTAGG-AACAACAGTTGAAGAGGG  1048

seq1  GTGTGATTTTGACTTCAACGTCCTC-CACTATCAC-GGTCACCCAAACAA  1093
        ||||||||||||||||||||||| ||||||||| ||||| ||||||| 
seq2  TGGTGATTTTGACTTCAACGTCCTCACACTATCACGGGTCA-CCAAACAG  1097

seq1  GCTGTATGCATTCATGGAAACTGGGGTTTTGTCCCTTTAGGCAGAAAGTT  1143
       ||| |||| |||||  | ||||||| |||||||||||||||   ||| |
seq2  TCTG-ATGCTTTCAT-CAGACTGGGG-TTTGTCCCTTTAGGC--GAAGGT  1142

seq1  GATTATCTCTATGATATTACCAGAGATAATCTTTTTTAT  1182
      ||||||| |||||| ||||| | ||||||||||||||||
seq2  GATTATC-CTATGAAATTACGA-AGATAATCTTTTTTAT  1179

seq1: chr9_42359673_42360822
seq2: B6Ng01-080E21.g_68_1222 (reverse)

seq1  CCTAGACGGTCT-GACGGCACAGGAGCTGAG-CAGAGGTTGCCGCTAC-A  47
      |||||||||| | ||| ||||||  |||||| || | | || | |||| |
seq2  CCTAGACGGTTTCGAC-GCACAGAGGCTGAGACAAAAGATG-CACTACAA  48

seq1  GGTGGGGTGTG-CTCTCTCCA--GCCACGTTCCGCTGTCAGCTTTATTTC  94
      ||||||| ||| |||| ||||  || ||||| || ||||||||| |||||
seq2  GGTGGGG-GTGTCTCTTTCCAAGGCAACGTTACG-TGTCAGCTTAATTTC  96

seq1  TTCT-GTTTACTAC-AAAACCACCAGGCTAGATGCTGTCTAAGGGCCATT  142
      |||| ||||||||| ||||| ||||||||||||||| ||||||| |||||
seq2  TTCTGGTTTACTACAAAAACAACCAGGCTAGATGCTTTCTAAGGCCCATT  146

seq1  CGAAACGGAAATGCTGTAATTTTT-ATGATCTCAGGAATCCAGGAAGTCT  191
      ||||||||||||||| |||||||| ||||||||| ||||||| |||||||
seq2  CGAAACGGAAATGCTTTAATTTTTAATGATCTCA-GAATCCA-GAAGTCT  194

seq1  GTGGATGTAACTAGAAGTCAATATCACCTTAAGCCAATCTATGAGTA-GG  240
      ||| ||||||||||||||||||||||| || || ||||||||||||| ||
seq2  GTGAATGTAACTAGAAGTCAATATCACATTTAGACAATCTATGAGTAGGG  244

seq1  TCTGCTTTC-ACACTTAAAGTTATATCAGTCATAATAGCACCTACTACCT  289
      ||||||||| ||||||||||||||||||||||||| |||| |||||||||
seq2  TCTGCTTTCAACACTTAAAGTTATATCAGTCATAAAAGCA-CTACTACCT  293

seq1  GTATGCAGTGCCTGCCTCGATAGCTTTCTGTGTGAGTGACCCCATGGTAC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCAGTGCCTGCCTCGATAGCTTTCTGTGTGAGTGACCCCATGGTAC  343

seq1  CTGCATAGCC-TTATTCCTCAGTGACTTCAGCTTTTATGGGTGGCTTCTC  388
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAGCCTTTATTCCTCAGTGACTTCAGCTTTTATGGGTGGCTTCTC  393

seq1  ATTTCCTCTCAGAGAACCAGGAGGAGCATCCTCAATGCCCTAGGGAAGAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCTCAGAGAACCAGGAGGAGCATCCTCAATGCCCTAGGGAAGAA  443

seq1  TTTTACTTTCCCCTGGCACAAAAGGGACACAGAGTTGCTTTACCACTTGC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTCCCCTGGCACAAAAGGGACACAGAGTTGCTTTACCACTTGC  493

seq1  CCTGCTTATAGGCAGTCATTCTTGAGACCTGCCGTCTTTCATCAATGTTA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTATAGGCAGTCATTCTTGAGACCTGCCGTCTTTCATCAATGTTA  543

seq1  CCAGAACCTCTTAGGAAGCCTTTATGAAAATAATTTTCTTTCCATGTATA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACCTCTTAGGAAGCCTTTATGAAAATAATTTTCTTTCCATGTATA  593

seq1  GCACAGGCCAGGGAGAATCCAAGGGCATTTTCTCCCAGTACATGAATGGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGCCAGGGAGAATCCAAGGGCATTTTCTCCCAGTACATGAATGGT  643

seq1  TGTTGATGTTCAGAGGACGCTTGATCAGGCTGGTTGGGAAAATGAGTCTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATGTTCAGAGGACGCTTGATCAGGCTGGTTGGGAAAATGAGTCTG  693

seq1  AAGAAGAGGCAAAGGACGGCAAAAGAGGGAAAGGAACAGGAGGAGGAGGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGGCAAAGGACGGCAAAAGAGGGAAAGGAACAGGAGGAGGAGGA  743

seq1  GCAAGAAAAGGAGAAGCAGCATTAGCAGAAAGAGGAGGGGGGAGGAGGAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAAAGGAGAAGCAGCATTAGCAGAAAGAGGAGGGGGGAGGAGGAG  793

seq1  GAGAAGCAGAAGCAGCAGCAGCAACAGGAGAAGGGGGGCAGGTTAGAGAC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAGAAGCAGCAGCAGCAACAGGAGAAGGGGGGCAGGTTAGAGAC  843

seq1  CAGATCATGAGTGTGTTTGCTCCCATCATTACATCAATCTTGTAACAAGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCATGAGTGTGTTTGCTCCCATCATTACATCAATCTTGTAACAAGA  893

seq1  AACAAGGGGTTCAGGGGCAACAGAAGCTGGGTCCACGGTTGTTCATTGCA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGGGTTCAGGGGCAACAGAAGCTGGGTCCACGGTTGTTCATTGCA  943

seq1  ATGTCTACCACAGGCTGACTGTCTTACTCATCGCCCTAGCATCCCGTGGC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTACCACAGGCTGACTGTCTTACTCATCGCCCTAGCATCCCGTGGC  993

seq1  AGACACAGAAAGATGCAGAGTGTGAAGAACCCACACAGGTGATGAAGGAC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGAAAGATGCAGAGTGTGAAGAACCCACACAGGTGATGAAGGAC  1043

seq1  TCAAAGAAGACCACCTTTGCTACTTTTGTACTGCAGTAGAAATCACTAGC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAGACCACCTTTGCTACTTTTGTACTGCAGTAGAAATCACTAGC  1093

seq1  TTGGTCCACTCTCGGGGCTACGCTTGGTTGCAGACTGCCTCTCGATAAAT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCACTCTCGGGGCTACGCTTGGTTGCAGACTGCCTCTCGATAAAT  1143

seq1  GTACATGAATTC  1150
      ||||||||||||
seq2  GTACATGAATTC  1155