BAC Information

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BAC

Clone NameB6Ng01-081D06
Chromosome9 (Build37)
Map Location 105,298,938 - 105,470,460
singlet/doubletdoublet
Overlap geneAste1, Atp2c1, EG434434, LOC664981
Upstream geneCpne4, Mrpl3, Nudt16, 1700080E11Rik, Nek11
Downstream genePik3r4, E330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081D06.bB6Ng01-081D06.g
ACCDH896124DH896125
length927119
definitionDH896124|Mus musculus domesticus DNA, BAC clone: B6Ng01-081D06, 5' end.DH896125|Mus musculus domesticus DNA, BAC clone: B6Ng01-081D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,298,938 - 105,299,870)(105,470,342 - 105,470,460)
sequence
gaattcttcgttgatttgaaattgcggaacacaaaacttatcattgatgg
ctattctctcttccaccgactttgcttcaattctgacttggagctcaggt
atggaggagactatgatttattcgcagatgttgtacagaaattctttgaa
tcactgtttgtgtgtcatatttgtccgtatgttgtattagatggaggatg
tgacatttcagataaaaagctgacaactttgaaggatcgagcaaaagaga
agatccaagcagcccgttccctttctcttggtgggggtgggaatgtgtgc
cccttactcatccgagaagtgttcatacaggttttgatcaggcttgaggt
atgtttcgtacagagctttttcagaagcagatcgggacattatgacactt
gccaatcactggaattgtcctgtgctatcatcggatagtgacttttgcat
ttttgacttgagaagtgggttttgctcactgaatagcttccagtggagaa
atctgaacactattaaagatacacaagattactacattcccgccagaagc
ttttccctcaatgcattctgccattacttcaacaacatgaacaaagctct
actacctctctttgcggtgctgtgtggaaatgaccatgttaacctgccca
tcatggacacattcataagtaaagtacgtctaccccttagttctaagggg
aggagatatcaccgagtcctgggacttctgaactggttgtctcatttcga
tgaccccactgaagcactagataacgttctgaagtctctccccaagaaga
gtgagaaaattttaaggaacttctctgctgctccatggagagtaccagca
gtccccagtgaagctgcaaggacttctccagatgtaatttatgtctgtac
gacgcttcggatctggtctacgagtgg
tctgtttatgacataatagaaacaacaacaaaagcatggggctttcagga
gcatatttggcaaggatccatgggcttctgcactgttttcatagtctgtg
tgtgtgtgggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_105298938_105299870
seq2: B6Ng01-081D06.b_46_972

seq1  GAATTCTTCGTTGATTTGAAATTGCGGAACACAAAACTTATCATTGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGTTGATTTGAAATTGCGGAACACAAAACTTATCATTGATGG  50

seq1  CTATTCTCTCTTCCACCGACTTTGCTTCAATTCTGACTTGGAGCTCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTCTCTTCCACCGACTTTGCTTCAATTCTGACTTGGAGCTCAGGT  100

seq1  ATGGAGGAGACTATGATTTATTCGCAGATGTTGTACAGAAATTCTTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAGACTATGATTTATTCGCAGATGTTGTACAGAAATTCTTTGAA  150

seq1  TCACTGTTTGTGTGTCATATTTGTCCGTATGTTGTATTAGATGGAGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTTGTGTGTCATATTTGTCCGTATGTTGTATTAGATGGAGGATG  200

seq1  TGACATTTCAGATAAAAAGCTGACAACTTTGAAGGATCGAGCAAAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTCAGATAAAAAGCTGACAACTTTGAAGGATCGAGCAAAAGAGA  250

seq1  AGATCCAAGCAGCCCGTTCCCTTTCTCTTGGTGGGGGTGGGAATGTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAAGCAGCCCGTTCCCTTTCTCTTGGTGGGGGTGGGAATGTGTGC  300

seq1  CCCTTACTCATCCGAGAAGTGTTCATACAGGTTTTGATCAGGCTTGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACTCATCCGAGAAGTGTTCATACAGGTTTTGATCAGGCTTGAGGT  350

seq1  ATGTTTCGTACAGAGC-TTTTCAGAAGCAGATCGGGACATTATGACACTT  399
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATGTTTCGTACAGAGCTTTTTCAGAAGCAGATCGGGACATTATGACACTT  400

seq1  GCCAATCACTGGAATTGTCCTGTGCTATCATCGGATAGTGACTTTTGCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATCACTGGAATTGTCCTGTGCTATCATCGGATAGTGACTTTTGCAT  450

seq1  TTTTGACTTGAGAAGTGGGTTTTGCTCACTGAATAGCTTCCAGTGGAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTTGAGAAGTGGGTTTTGCTCACTGAATAGCTTCCAGTGGAGAA  500

seq1  ATCTGAACACTATTAAAGATACACAAGATTACTACATTCCCGCCAGAAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACACTATTAAAGATACACAAGATTACTACATTCCCGCCAGAAGC  550

seq1  TTTTCCCTCAATGCATTCTGCCATTACTTCAACAACATGAACAAAGCTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTCAATGCATTCTGCCATTACTTCAACAACATGAACAAAGCTCT  600

seq1  ACTACCTCTCTTTGCGGTGCTGTGTGGAAATGACCATGTTAACCTGCCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTCTCTTTGCGGTGCTGTGTGGAAATGACCATGTTAACCTGCCCA  650

seq1  TCATGGACACATTCATAAGTAAAGTACGTCTACCCCTTAGTTCTAAGGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGACACATTCATAAGTAAAGTACGTCTACCCCTTAGTTCTAAGGGG  700

seq1  AGGAGATATCACCGAGTCCTGGGACTTCTGAACTGGTTGTCTCATTTCGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATATCACCGAGTCCTGGGACTTCTGAACTGGTTGTCTCATTTCGA  750

seq1  TGACCCCACTGAAGCACTAGATAACGTTCTGAAGTCTCTCCCCAAGAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCACTGAAGCACTAGATAACGTTCTGAAGTCTCTCCCCAAGAAGA  800

seq1  GTCGAGAAAATGTTAAGGAACTTCTCTGCTGCTCCATGGAGGAGTACCAG  849
      || |||||||| |||||||||||||||||||||||||||| |||||||||
seq2  GT-GAGAAAATTTTAAGGAACTTCTCTGCTGCTCCATGGA-GAGTACCAG  848

seq1  CAGTCCCCGGTGAAGCTGC-AGGACTTCTTCCAGTATGGTAGTTATGTCT  898
      |||||||| |||||||||| |||||||| ||||| |||  | ||||||||
seq2  CAGTCCCCAGTGAAGCTGCAAGGACTTC-TCCAG-ATGTAATTTATGTCT  896

seq1  GTACGGACGCTTCGGATCTGGGTCTACCAGAGTGG  933
      |||| |||||||||||||| |||||||  ||||||
seq2  GTAC-GACGCTTCGGATCT-GGTCTAC--GAGTGG  927

seq1: chr9_105470342_105470460
seq2: B6Ng01-081D06.g_74_192 (reverse)

seq1  CCCCCCCCCCCCACACACACACAGACTATGAAAACAGTGCAGAAGCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCACACACACACAGACTATGAAAACAGTGCAGAAGCCCAT  50

seq1  GGATCCTTGCCAAATATGCTCCTGAAAGCCCCATGCTTTTGTTGTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTTGCCAAATATGCTCCTGAAAGCCCCATGCTTTTGTTGTTGTTT  100

seq1  CTATTATGTCATAAACAGA  119
      |||||||||||||||||||
seq2  CTATTATGTCATAAACAGA  119