BAC Information

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BAC

Clone NameB6Ng01-082D23
Chromosome9 (Build37)
Map Location 113,621,234 - 113,765,828
singlet/doubletdoublet
Overlap geneClasp2
Upstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680, Pdcd6ip
Downstream geneUbp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082D23.bB6Ng01-082D23.g
ACCDH896859DH896860
length1,019335
definitionDH896859|Mus musculus domesticus DNA, BAC clone: B6Ng01-082D23, 5' end.DH896860|Mus musculus domesticus DNA, BAC clone: B6Ng01-082D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,764,777 - 113,765,828)(113,621,234 - 113,621,568)
sequence
gaattctctaagttcagacatgataaacaaggttcaatacagaagaaagc
agagcccactagtcatgtgtctcatgaggacagaggttgggtgtgtgcta
ccatgcccagcttttaggtaagtgcgcaaactttttatttatttattcat
tcattcatttattttggtgctgtgctgcagtttcttttcttttctttttt
aaagatttatttagtatatgtacatacactgtagctgtcttccgacactc
cagaaaagggcatcagatcttgttacaggtggttgtaagccaccatgtgg
ttgctgggatttgaactcaggaccttcagaagagcagttggtgcccttaa
ccactgagccatctccccaaccctaagtgctcaaatcttaactcatatcc
ttatgcttgtctagcaagtgcttttacattctgaaaggcatcttcgcaat
cctgcttttacttccttttattttattgaaacagtgtttccttatggagc
ctggctggctgcttccccagtactgagagtaaaggcatgcaacagtacac
ttgattccaccttctttttcttccttttctttctcctccttccaccttct
gtgttttctttaggtcaccagttcctttttacttcatttcattaggctga
cagaccctccttgccaagcccttacagtgaggggatctactcctcactcg
agatcacagaaccaaaagggagctgagcctagagtttccaggactctcta
tggatcttaagggtgccccagtctctccacagacatctgcagtcaggaac
ctcagtggtatggagagaatatgtatgtagcattagaataccgcactatg
atattgagaaaaagagcacaagctcatattcagtaaataatgcacacaag
tagctggaccaagacactcagactgaaagggcatacaacaggagattaca
tctgagtaaagtgattttattttttggtataatacttattactcaattac
tgggtcaagtgtgtgtgtg
tcttgttgctgctgtgctggctgagtattccagagcaggtggcccccaaa
ctgttcattctcctgtcttcagctcccagctcactgcagggactgtgtga
gtgaagatgcgctccactgcatccagctttatatgttgtcattttgcttt
gttgttcttttttctttttttctgagacaaggttcccttctatgtagccc
tggctgctgtccttgaactccatatgtagatcagatttgaagcagaagaa
gtgaagagcatcaaagatgctagatcaacagttcaggtatgcaagcaagc
caagcccagcctccatcactgtccgatgagtcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_113764777_113765828
seq2: B6Ng01-082D23.b_45_1063 (reverse)

seq1  CACACACACACACACACACACACACACACACACACTTTGACCCAGTAATT  50
                              ||||||||||| ||||||||||||||
seq2  ------------------------CACACACACAC-TTGACCCAGTAATT  25

seq1  GAGTAATTAAGTAATTATACCAAAAAATAAAAATCAACCTTTACTTCAGA  100
      |||||| ||||| ||||||||||||||| |||||||  |||||| |||| 
seq2  GAGTAA-TAAGT-ATTATACCAAAAAAT-AAAATCA--CTTTAC-TCAG-  68

seq1  ATGTAATCTCCTGTTGTATGCCCTTTCAGTCTGAGTGTCTTTGGTCCAGC  150
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGTAATCTCCTGTTGTATGCCCTTTCAGTCTGAGTGTC-TTGGTCCAGC  117

seq1  TACTTGTGTGCATTATTTACTGAATATGAGCTTGTGCTCTTTTTCTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTGTGCATTATTTACTGAATATGAGCTTGTGCTCTTTTTCTCAAT  167

seq1  ATCATAGTGCGGTATTCTAATGCTACATACATATTCTCTCCATACCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGTGCGGTATTCTAATGCTACATACATATTCTCTCCATACCACTG  217

seq1  AGGTTCCTGACTGCAGATGTCTGTGGAGAGACTGGGGCACCCTTAAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCTGACTGCAGATGTCTGTGGAGAGACTGGGGCACCCTTAAGATC  267

seq1  CATAGAGAGTCCTGGAAACTCTAGGCTCAGCTCCCTTTTGGTTCTGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGAGTCCTGGAAACTCTAGGCTCAGCTCCCTTTTGGTTCTGTGAT  317

seq1  CTCGAGTGAGGAGTAGATCCCCTCACTGTAAGGGCTTGGCAAGGAGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGTGAGGAGTAGATCCCCTCACTGTAAGGGCTTGGCAAGGAGGGTC  367

seq1  TGTCAGCCTAATGAAATGAAGTAAAAAGGAACTGGTGACCTAAAGAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCCTAATGAAATGAAGTAAAAAGGAACTGGTGACCTAAAGAAAAC  417

seq1  ACAGAAGGTGGAAGGAGGAGAAAGAAAAGGAAGAAAAAGAAGGTGGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGTGGAAGGAGGAGAAAGAAAAGGAAGAAAAAGAAGGTGGAATC  467

seq1  AAGTGTACTGTTGCATGCCTTTACTCTCAGTACTGGGGAAGCAGCCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTACTGTTGCATGCCTTTACTCTCAGTACTGGGGAAGCAGCCAGCC  517

seq1  AGGCTCCATAAGGAAACACTGTTTCAATAAAATAAAAGGAAGTAAAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCATAAGGAAACACTGTTTCAATAAAATAAAAGGAAGTAAAAGCA  567

seq1  GGATTGCGAAGATGCCTTTCAGAATGTAAAAGCACTTGCTAGACAAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCGAAGATGCCTTTCAGAATGTAAAAGCACTTGCTAGACAAGCAT  617

seq1  AAGGATATGAGTTAAGATTTGAGCACTTAGGGTTGGGGAGATGGCTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATGAGTTAAGATTTGAGCACTTAGGGTTGGGGAGATGGCTCAGT  667

seq1  GGTTAAGGGCACCAACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGGGCACCAACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGC  717

seq1  AACCACATGGTGGCTTACAACCACCTGTAACAAGATCTGATGCCCTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATGGTGGCTTACAACCACCTGTAACAAGATCTGATGCCCTTTTC  767

seq1  TGGAGTGTCGGAAGACAGCTACAGTGTATGTACATATACTAAATAAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTCGGAAGACAGCTACAGTGTATGTACATATACTAAATAAATCT  817

seq1  TTAAAAAAGAAAAGAAAAGAAACTGCAGCACAGCACCAAAATAAATGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAGAAAAGAAAAGAAACTGCAGCACAGCACCAAAATAAATGAAT  867

seq1  GAATGAATAAATAAATAAAAAGTTTGCGCACTTACCTAAAAGCTGGGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATAAATAAATAAAAAGTTTGCGCACTTACCTAAAAGCTGGGCAT  917

seq1  GGTAGCACACACCCAACCTCTGTCCTCATGAGACACATGACTAGTGGGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCACACACCCAACCTCTGTCCTCATGAGACACATGACTAGTGGGCT  967

seq1  CTGCTTTCTTCTGTATTGAACCTTGTTTATCATGTCTGAACTTAGAGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCTTCTGTATTGAACCTTGTTTATCATGTCTGAACTTAGAGAAT  1017

seq1  TC  1052
      ||
seq2  TC  1019

seq1: chr9_113621234_113621568
seq2: B6Ng01-082D23.g_71_405

seq1  TCTTGTTGCTGCTGTGCTGGCTGAGTATTCCAGAGCAGGTGGCCCCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTGCTGCTGTGCTGGCTGAGTATTCCAGAGCAGGTGGCCCCCAAA  50

seq1  CTGTTCATTCTCCTGTCTTCAGCTCCCAGCTCACTGCAGGGACTGTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATTCTCCTGTCTTCAGCTCCCAGCTCACTGCAGGGACTGTGTGA  100

seq1  GTGAAGATGCGCTCCACTGCATCCAGCTTTATATGTTGTCATTTTGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGATGCGCTCCACTGCATCCAGCTTTATATGTTGTCATTTTGCTTT  150

seq1  GTTGTTCTTTTTTCTTTTTTTCTGAGACAAGGTTCCCTTCTATGTAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTTTTTTCTTTTTTTCTGAGACAAGGTTCCCTTCTATGTAGCCC  200

seq1  TGGCTGCTGTCCTTGAACTCCATATGTAGATCAGATTTGAAGCAGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTGTCCTTGAACTCCATATGTAGATCAGATTTGAAGCAGAAGAA  250

seq1  GTGAAGAGCATCAAAGATGCTAGATCAACAGTTCAGGTATGCAAGCAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGCATCAAAGATGCTAGATCAACAGTTCAGGTATGCAAGCAAGC  300

seq1  CAAGCCCAGCCTCCATCACTGTCCGATGAGTCCTT  335
      |||||||||||||||||||||||||||||||||||
seq2  CAAGCCCAGCCTCCATCACTGTCCGATGAGTCCTT  335