BAC Information

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BAC

Clone NameB6Ng01-083L23
Chromosome9 (Build37)
Map Location 59,020,229 - 59,125,622
singlet/doubletdoublet
Overlap genenone
Upstream geneIslr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330
Downstream geneAdpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083L23.bB6Ng01-083L23.g
ACCDH897921DH897922
length1,127987
definitionDH897921|Mus musculus domesticus DNA, BAC clone: B6Ng01-083L23, 5' end.DH897922|Mus musculus domesticus DNA, BAC clone: B6Ng01-083L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,020,229 - 59,021,374)(59,124,622 - 59,125,622)
sequence
gaattcaaagccatcatgggctgccgatcaagacccagcccaggaagact
gaaagttcaagtactgcctgagctacataggaagaatctgtccacccacc
ctacccccataccacacacacacacacacacacacacacacacacacaca
cacacacacacacacaaagatacctagtaattaagagacctctatgtagg
cagagaaagagcttgaagctcttctgctagggccatcatctttagtaagg
ccttaaagcaggttgtagaaatggtttttgcagctggctctatatccctg
actgggaaaagggggcttcacctcagcaggcagctcccccgacacacact
ttgctcttcacctctctttccctcttgcttgtgactctgatgttactctg
actctgaagccttctggccttggccagccctaatcctgcagtgttcccac
ctctcttggttcatcacactgtggtgacctcaggctgctgaaggttagac
tcatgagggtgatggagcgtcaccttctcccaactccgtggctcctgaga
ggtggtgggtcagtctcatatcaccatagaaaagctgataatatttttca
tgagtaccagagggaccctgagcctttgtgtgttgggaacagtgatctgc
acagcagatactgccctgggggactggggagatggttcagtatgcaaaca
catagaaatataaatatgaaaattggtggttgctgtcatcccagtcgaaa
ctttctgtgcagtgtatctaagtgaatgtcattttatttggaaacaagat
agcgtccaaagactgttttaagccttttaacttagatataagaataatca
tgtgtcccttgcaaagcatgaggacctgaatctgttccctagagcacatg
taaaaatgctgggcatggtggcatgtgcttgttagggccactgcagagag
cagagataggagaatcccagccagccttgcctattgtgacctcaggtcat
caagaccctggctcaaaagagtagatgcatttctgagatgacacccaaat
attgctactccacatttatatatatacattcatacatcattcctctctct
ttctcaccatgccacatacacagtatt
gaattcaatccggaaaaatccatcaatattaaaaatacatatgccttttg
acctagcaattccactcctgggaatctaggcctggaaaatgaaagcagct
aagggcccgtgggtgggggtgtctatcccaacactgtttgttgatgtgtt
cgtggtgtgtgcctgtgcctctgcatgtgcacacacagtggaaacaaagc
aaatgccaggagcagagaagcagtaagaagagctgctctcctttagagct
caaagcaagaggcccaaggtttcttagcacacaaagtccttctcctgggg
cggaagtggacagtgggtagcaacctgccctccttgatttagccaagaca
ttgacaccagcgtaggcatggcggggagattttctagtatggaacccctc
tcaataacactcaggtcctgtcacttcaggatcaaagaaagaagaacaac
aaaagaaggttacaaaggtggctcttgggaacatctattatcccacctag
tctggctttcccaggccaagctaggcaagcatctccatgatgagacatag
aatcaacagcaaagaatgatttctaaaacccacacccctcttctgctagg
aaggtagccccaacaggactcttacgggaaaagacaacctagcatatgtg
gaaatgtttgaaactataaccaagccactaaactacattaaaatgttcta
ttctacaccaaaaaaaaaaaaacatattcgtaggacaaaaagcagatctt
gtcgaggtttggtctgctgttatgtattgcaatactaaattctagcatga
aggtataggcctaggagtgacttcttttgtttacaagcttctgttgggca
gtcctttcttcttcttctttcttcttcttcttcttctttcttctttcatt
atttaattaattaatttattattttggtggtttatcgagacaggtttctc
tgtatagccctggcctgtcctgacttcacttatagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_59020229_59021374
seq2: B6Ng01-083L23.b_48_1174

seq1  GAATTCAAAGCCATCATGGGCTGCCGATCAAGACCCAGCCCAGGAAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCATCATGGGCTGCCGATCAAGACCCAGCCCAGGAAGACT  50

seq1  GAAAGTTCAAGTACTGCCTGAGCTACATAGGAAGAATCTGTCCACCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTCAAGTACTGCCTGAGCTACATAGGAAGAATCTGTCCACCCACC  100

seq1  CTACCCCCATACCACACACACACACACACACACACACACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCCATACCACACACACACACACACACACACACACACACACACACA  150

seq1  CACACACACACACACAAAGATACCTAGTAATTAAGAGACCTCTATGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACAAAGATACCTAGTAATTAAGAGACCTCTATGTAGG  200

seq1  CAGAGAAAGAGCTTGAAGCTCTTCTGCTAGGGCCATCATCTTTAGTAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAGAGCTTGAAGCTCTTCTGCTAGGGCCATCATCTTTAGTAAGG  250

seq1  CCTTAAAGCAGGTTGTAGAAATGGTTTTTGCAGCTGGCTCTATATCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGCAGGTTGTAGAAATGGTTTTTGCAGCTGGCTCTATATCCCTG  300

seq1  ACTGGGAAAAGGGGGCTTCACCTCAGCAGGCAGCTCCCCCGACACACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAAAGGGGGCTTCACCTCAGCAGGCAGCTCCCCCGACACACACT  350

seq1  TTGCTCTTCACCTCTCTTTCCCTCTTGCTTGTGACTCTGATGTTACTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTCACCTCTCTTTCCCTCTTGCTTGTGACTCTGATGTTACTCTG  400

seq1  ACTCTGAAGCCTTCTGGCCTTGGCCAGCCCTAATCCTGCAGTGTTCCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAAGCCTTCTGGCCTTGGCCAGCCCTAATCCTGCAGTGTTCCCAC  450

seq1  CTCTCTTGGTTCATCACACTGTGGTGACCTCAGGCTGCTGAAGGTTAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTGGTTCATCACACTGTGGTGACCTCAGGCTGCTGAAGGTTAGAC  500

seq1  TCATGAGGGTGATGGAGCGTCACCTTCTCCCAACTCCGTGGCTCCTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGGGTGATGGAGCGTCACCTTCTCCCAACTCCGTGGCTCCTGAGA  550

seq1  GGTGGTGGGTCAGTCTCATATCACCATAGAAAAGCTGATAATATTTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGGTCAGTCTCATATCACCATAGAAAAGCTGATAATATTTTTCA  600

seq1  TGAGTACCAGAGGGACCCTGAGCCTTTGTGTGTTGGGAACAGTGATCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACCAGAGGGACCCTGAGCCTTTGTGTGTTGGGAACAGTGATCTGC  650

seq1  ACAGCAGATACTGCCCTGGGGGACTGGGGAGATGGTTCAGTATGCAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGATACTGCCCTGGGGGACTGGGGAGATGGTTCAGTATGCAAACA  700

seq1  CATAGAAATATAAATATGAAAATTGGTGGTTGCTGTCATCCCAGTCGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAATATAAATATGAAAATTGGTGGTTGCTGTCATCCCAGTCGAAA  750

seq1  CTTTCTGTGCAGTGTATCTAAGTGAATGTCATTTTATTTGGAAACAAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTGCAGTGTATCTAAGTGAATGTCATTTTATTTGGAAACAAGAT  800

seq1  AGCGTCCAAAGACTGTTTTAAGCCTTTTAACTTAGATATAAGAATAATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCCAAAGACTGTTTTAAGCCTTTTAACTTAGATATAAGAATAATCA  850

seq1  TGTGTCCCTTGCAAAGCATGAGGACCTGAATCTGTTCCCTAGAGCACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCCTTGCAAAGCATGAGGACCTGAATCTGTTCCCTAGAGCACATG  900

seq1  TAAAAATGCTGGGCATGGTGGCATGTGCTTGTTAGGGCCACTGCAGGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAAAAATGCTGGGCATGGTGGCATGTGCTTGTTAGGGCCACTGCA-GAGA  949

seq1  GGCAGAGATAGGAGAATCCCAGCCAGCCTTGCCTAATTGGTGACCTCCAG  1000
       ||||||||||||||||||||||||||||||||||  | ||||||| |||
seq2  -GCAGAGATAGGAGAATCCCAGCCAGCCTTGCCTA--TTGTGACCT-CAG  995

seq1  GTCAATCAAAGACCCTGGCTCAAAAGAAGTAGATGGCATTTCTGAGGATG  1050
      ||| ||| |||||||||||||||||| ||||||| |||||||||| ||||
seq2  GTC-ATC-AAGACCCTGGCTCAAAAG-AGTAGAT-GCATTTCTGA-GATG  1040

seq1  ACACCCAAAATTATTGCCTGGCCTCCACATTTATATATTATACATTCATA  1100
      |||||||||  ||||||     ||||||||||||||| ||||||||||||
seq2  ACACCCAAA--TATTGC---TACTCCACATTTATATA-TATACATTCATA  1084

seq1  CATTCATTCTCTCTCTCTTTCTCACACATG-CACATACACATGTATT  1146
      || |||||| ||||||||||||||| |||| |||||||||| |||||
seq2  CA-TCATTC-CTCTCTCTTTCTCAC-CATGCCACATACACA-GTATT  1127

seq1: chr9_59124622_59125622
seq2: B6Ng01-083L23.g_68_1054 (reverse)

seq1  GTCTATAAAGTGAGTTCCAGGACA-GCCAGGGCTATACAGAGAAACCCTG  49
      |||||| ||||||  | ||||||| |||||||||||||||||||| ||||
seq2  GTCTAT-AAGTGAAGT-CAGGACAGGCCAGGGCTATACAGAGAAA-CCTG  47

seq1  TCTCGATAAACCACCAAAAATAAATAAATTAATTAATTAAATAAATGAAA  99
      |||||||||||||||||||   |||||||||||||||||||| |||||||
seq2  TCTCGATAAACCACCAAAA--TAATAAATTAATTAATTAAAT-AATGAAA  94

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGG  149
      | ||||||| |||||   |||||   ||||||| |||||   ||||||||
seq2  G-AAGAAAG-AAGAA--GAAGAA--GAAGAAAG-AAGAA--GAAGAAAGG  135

seq1  ACTGCCCAACAGAAGCTTGTAAACAAAAGAAGTCACTCCTAGGCCTATAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCAACAGAAGCTTGTAAACAAAAGAAGTCACTCCTAGGCCTATAC  185

seq1  CTTCATGCTAGAATTTAGTATTGCAATACATAACAGCAGACCAAACCTCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGCTAGAATTTAGTATTGCAATACATAACAGCAGACCAAACCTCG  235

seq1  ACAAGATCTGCTTTTTGTCCTACGAATATGTTTTTTTTTTTTTGGTGTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATCTGCTTTTTGTCCTACGAATATGTTTTTTTTTTTTTGGTGTAG  285

seq1  AATAGAACATTTTAATGTAGTTTAGTGGCTTGGTTATAGTTTCAAACATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAACATTTTAATGTAGTTTAGTGGCTTGGTTATAGTTTCAAACATT  335

seq1  TCCACATATGCTAGGTTGTCTTTTCCCGTAAGAGTCCTGTTGGGGCTACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATATGCTAGGTTGTCTTTTCCCGTAAGAGTCCTGTTGGGGCTACC  385

seq1  TTCCTAGCAGAAGAGGGGTGTGGGTTTTAGAAATCATTCTTTGCTGTTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGCAGAAGAGGGGTGTGGGTTTTAGAAATCATTCTTTGCTGTTGA  435

seq1  TTCTATGTCTCATCATGGAGATGCTTGCCTAGCTTGGCCTGGGAAAGCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTCTCATCATGGAGATGCTTGCCTAGCTTGGCCTGGGAAAGCCA  485

seq1  GACTAGGTGGGATAATAGATGTTCCCAAGAGCCACCTTTGTAACCTTCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGTGGGATAATAGATGTTCCCAAGAGCCACCTTTGTAACCTTCTT  535

seq1  TTGTTGTTCTTCTTTCTTTGATCCTGAAGTGACAGGACCTGAGTGTTATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTCTTCTTTCTTTGATCCTGAAGTGACAGGACCTGAGTGTTATT  585

seq1  GAGAGGGGTTCCATACTAGAAAATCTCCCCGCCATGCCTACGCTGGTGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGTTCCATACTAGAAAATCTCCCCGCCATGCCTACGCTGGTGTC  635

seq1  AATGTCTTGGCTAAATCAAGGAGGGCAGGTTGCTACCCACTGTCCACTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTGGCTAAATCAAGGAGGGCAGGTTGCTACCCACTGTCCACTTC  685

seq1  CGCCCCAGGAGAAGGACTTTGTGTGCTAAGAAACCTTGGGCCTCTTGCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCAGGAGAAGGACTTTGTGTGCTAAGAAACCTTGGGCCTCTTGCTT  735

seq1  TGAGCTCTAAAGGAGAGCAGCTCTTCTTACTGCTTCTCTGCTCCTGGCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTAAAGGAGAGCAGCTCTTCTTACTGCTTCTCTGCTCCTGGCAT  785

seq1  TTGCTTTGTTTCCACTGTGTGTGCACATGCAGAGGCACAGGCACACACCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGTTTCCACTGTGTGTGCACATGCAGAGGCACAGGCACACACCA  835

seq1  CGAACACATCAACAAACAGTGTTGGGATAGACACCCCCACCCACGGGCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACACATCAACAAACAGTGTTGGGATAGACACCCCCACCCACGGGCCC  885

seq1  TTAGCTGCTTTCATTTTCCAGGCCTAGATTCCCAGGAGTGGAATTGCTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGCTTTCATTTTCCAGGCCTAGATTCCCAGGAGTGGAATTGCTAG  935

seq1  GTCAAAAGGCATATGTATTTTTAATATTGATGGATTTTTCCGGATTGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAGGCATATGTATTTTTAATATTGATGGATTTTTCCGGATTGAAT  985

seq1  TC  1001
      ||
seq2  TC  987