BAC Information

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BAC

Clone NameB6Ng01-084B09
Chromosome9 (Build37)
Map Location 85,560,930 - 85,701,824
singlet/doubletdoublet
Overlap geneIbtk, 4933431K14Rik, EG434426
Upstream geneLOC666672, BC023892
Downstream gene9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35, Snap91
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084B09.bB6Ng01-084B09.g
ACCDH898156DH898157
length1,1311,024
definitionDH898156|Mus musculus domesticus DNA, BAC clone: B6Ng01-084B09, 5' end.DH898157|Mus musculus domesticus DNA, BAC clone: B6Ng01-084B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,560,930 - 85,562,076)(85,700,798 - 85,701,824)
sequence
gaattccttttgaaaagagtttttaactatatgcagttgaaatgaatgaa
attctgtttgatatgtttttttttattatttatatccactgtacaaagtg
atgagttccttagacattttcaggcaaggtatcacatactttaaccatat
tcaatcccatgggcttaaatttaagatagcctctttaattattattgtta
cacacaaatgctcacacatgtgcacatacacagacagacagacagagaaa
cagatacagagaaagaaaatatatttatatatatctaaaatcaacatatg
agaaaagtgtatttttttctttctgaattttgcttaaaataatgatctcc
agttctacttactttacttcaaatgacataactgactctttatcataact
aattcaaataccattgtgtgtatttgtggcactttccttatcaacctgat
gaatatcaagtccgacttgtaatttgagtagcgcaacaaaaacacaagct
ggtgcctctgtcgtatttttagattcttaaggttaactccccaagagtga
tagaccagagtcatatggtggccctattttagtttttacgttcttgaggg
aacctacatatattgattgccatagtgaatagatgaatttacatggcccc
caacatcatcttgactagaatttgatttttggtttttgttttcttaatga
tagccattgtgagggggtaatagcaaaaaaaaaaaaaaaaattaagaaga
aaaaaagaaagaaagaaaaaagaaggaaggaaggaaggaatcaaaacaca
tcacagacattaatgcaaatcctgaaagtgaaaatggttcgtaaaaatat
ttcaagatctccacataagccctaattttcttaaagaatgtacaggaaat
aataaaccaagtgaagatgcctacggaacgggagagagctctttctcagc
tgcatatcttgacagaggttaaatttataccagatgaagactcaaagagc
tcccaaaccagagagtcaaattaatagatcataaaagaactgctgctagt
ttatgcagtgacacagtagagtcatctgagaggaggactatcagctgagt
attgcttcataagatcagctgtagacagtct
gaattcttgatatacacgagcaggagcctaggctggttattgagagacag
acagatcaagagacagagagaaacccaggaagagactacaagtcagatag
ttcagtctctagctgttctcaggcaacagtgcagtacggtggaaaagcca
ggttagctgtgagtataacatttaaaaaagcctcttctaaaatgggtgga
gctaagtggccatccaggagtcaaagaagcccagaagtagacgatgtctt
cttcatcatgcttcactcagagcacagacactcctagtcctgacagtgac
ttaaaggggtagttaggagcttctgatgtcagatatgagcttggccagtc
cttctttgacttctaagctggagaagaaaaatgtaaagctaccttcttgt
gattttgaccacagctcactctgcaggcaggtgaaggtctctgtttagct
gcttctctggtgttcatgctacagcttgctttctcggaggaactctggac
ctcaggttttggaaaggaagaagcagctgagggaaatgtggccagtgcag
aggcggagagcaattttacctcagggaaaacttctctgttgaattctcac
tttcttcttggtccactactgtcaccaggaaagaatcctataggtcaatt
tccactgtttgatgactggtaacgggtttcttgtgacatcccttcgggct
acttacatttgaagcagagaatttcactaaatcgtggactctgaaacgaa
gaattttaagtaccttggaatgttctaggagaagtgcgcaaaacctcaga
actccgcctaactcctaaccagctatatcatataaatagcagcccacact
agcattgacagtccttggcagcttccaagttgagatactaataatataat
catgtgccaagcccaatcttaacctctgcatcattgtggaaagtctcatg
accctgggaaggcaatgtatattggctccttcctttgggtggtcccatca
tggattatctttgacaacttaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_85560930_85562076
seq2: B6Ng01-084B09.b_45_1175

seq1  GAATTCCTTTTGAAAAGAGTTTTTAACTATATGCAGTTGAAATGAATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTGAAAAGAGTTTTTAACTATATGCAGTTGAAATGAATGAA  50

seq1  ATTCTGTTTGATATGTTTTTTTTTATTATTTATATCCACTGTACAAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTTGATATGTTTTTTTTTATTATTTATATCCACTGTACAAAGTG  100

seq1  ATGAGTTCCTTAGACATTTTCAGGCAAGGTATCACATACTTTAACCATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCCTTAGACATTTTCAGGCAAGGTATCACATACTTTAACCATAT  150

seq1  TCAATCCCATGGGCTTAAATTTAAGATAGCCTCTTTAATTATTATTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCCATGGGCTTAAATTTAAGATAGCCTCTTTAATTATTATTGTTA  200

seq1  CACACAAATGCTCACACATGTGCACATACACAGACAGACAGACAGAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAATGCTCACACATGTGCACATACACAGACAGACAGACAGAGAAA  250

seq1  CAGATACAGAGAAAGAAAATATATTTATATATATCTAAAATCAACATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACAGAGAAAGAAAATATATTTATATATATCTAAAATCAACATATG  300

seq1  AGAAAAGTGTATTTTTTTCTTTCTGAATTTTGCTTAAAATAATGATCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTGTATTTTTTTCTTTCTGAATTTTGCTTAAAATAATGATCTCC  350

seq1  AGTTCTACTTACTTTACTTCAAATGACATAACTGACTCTTTATCATAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTACTTACTTTACTTCAAATGACATAACTGACTCTTTATCATAACT  400

seq1  AATTCAAATACCATTGTGTGTATTTGTGGCACTTTCCTTATCAACCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAATACCATTGTGTGTATTTGTGGCACTTTCCTTATCAACCTGAT  450

seq1  GAATATCAAGTCCGACTTGTAATTTGAGTAGCGCAACAAAAACACAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCAAGTCCGACTTGTAATTTGAGTAGCGCAACAAAAACACAAGCT  500

seq1  GGTGCCTCTGTCGTATTTTTAGATTCTTAAGGTTAACTCCCCAAGAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTCTGTCGTATTTTTAGATTCTTAAGGTTAACTCCCCAAGAGTGA  550

seq1  TAGACCAGAGTCATATGGTGGCCCTATTTTAGTTTTTACGTTCTTGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGAGTCATATGGTGGCCCTATTTTAGTTTTTACGTTCTTGAGGG  600

seq1  AACCTACATATATTGATTGCCATAGTGAATAGATGAATTTACATGGCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACATATATTGATTGCCATAGTGAATAGATGAATTTACATGGCCCC  650

seq1  CAACATCATCTTGACTAGAATTTGATTTTTGGTTTTTGTTTTCTTAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCATCTTGACTAGAATTTGATTTTTGGTTTTTGTTTTCTTAATGA  700

seq1  TAGCCATTGTGAGGGGGTAATAGCAAAAAAAAAAAAAAAAATTAAGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATTGTGAGGGGGTAATAGCAAAAAAAAAAAAAAAAATTAAGAAGA  750

seq1  AAAAAAGAAAGAAAGAAAAAAGAAGGAAGGAAGGAAGGAATCAAAACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAGAAAGAAAAAAGAAGGAAGGAAGGAAGGAATCAAAACACA  800

seq1  TCACAGACATTAATGCAAATCCTGAAAGTGAAAATGGTTCGTAAAAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACATTAATGCAAATCCTGAAAGTGAAAATGGTTCGTAAAAATAT  850

seq1  TTCAAGATCTCCACATAAGCCCTAATTTTCTTAAAGAATGTACAGGAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATCTCCACATAAGCCCTAATTTTCTTAAAGAATGTACAGGAAAT  900

seq1  AATAAACCAAGTGAAGATGCCTACGGAACGGGAGAGAGCTCTTTCTCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCAAGTGAAGATGCCTACGGAACGGGAGAGAGCTCTTTCTCAGC  950

seq1  TGCATATCTTGACAGAGGTTAAATTTATACCAGATGAAGAACTCAAAGAG  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGCATATCTTGACAGAGGTTAAATTTATACCAGATGAAG-ACTCAAAGAG  999

seq1  CTCCCCAAACCAGAGAGTCAAATTAATAGATCCATAAAAGAAACCTGCTG  1050
      || |||||||||||||||||||||||||||| ||||||||||  ||||| 
seq2  CT-CCCAAACCAGAGAGTCAAATTAATAGAT-CATAAAAGAA--CTGCT-  1044

seq1  GCTAGTTTTATGGCAAGTTGACACAGGTAGAGTCATCTGAGAGGAGGGAC  1100
      ||||| ||||| |||   ||||||| ||||||||||||||||||| ||||
seq2  GCTAG-TTTAT-GCA--GTGACACA-GTAGAGTCATCTGAGAGGA-GGAC  1088

seq1  TATCAGCTGAGTAATTGCTTTCATAAGATCAGGCTGTAGACAAGTCT  1147
      |||||||||||| ||||| |||||||||||| ||||||||| |||||
seq2  TATCAGCTGAGT-ATTGC-TTCATAAGATCA-GCTGTAGAC-AGTCT  1131

seq1: chr9_85700798_85701824
seq2: B6Ng01-084B09.g_69_1092 (reverse)

seq1  CATTTAGTTGTCAAAGATAATTCATGATGGGACCACCCAAAGGAAGGAGC  50
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATTAAGTTGTCAAAGATAATCCATGATGGGACCACCCAAAGGAAGGAGC  50

seq1  CAATATCATTTGCTTTCCCAGGGTCATGAAGACTTTC--CCATGATGCAG  98
      ||||||   |||| |||||||||||||| ||||||||  | |||||||||
seq2  CAATATACATTGCCTTCCCAGGGTCATG-AGACTTTCCACAATGATGCAG  99

seq1  AGGTTAAGATTGGGGCTTTGGCCACATGATTATTATTCTTAGTATCCTCA  148
      ||||||||||| ||||||  | |||||||||| |||| ||||||| ||||
seq2  AGGTTAAGATT-GGGCTT--GGCACATGATTA-TATTATTAGTAT-CTCA  144

seq1  GCTTTGGAGCCTGCCAAGGACTGTCAATGCTAGTGTGGGCTGCTGTTTAT  198
       | |||||  |||||||||||||||||||||||||||||||||| |||||
seq2  AC-TTGGAAGCTGCCAAGGACTGTCAATGCTAGTGTGGGCTGCTATTTAT  193

seq1  ATGATATAGCTGGTTAGGTGTTAGGCGGAGTTCTGAGGTTTTGCGCACTT  248
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGATATAGCTGGTTAGGAGTTAGGCGGAGTTCTGAGGTTTTGCGCACTT  243

seq1  CTCCTAGAACATTCCAAGGTACTTAAAATTCTTCGTTTCAGAGTCCACGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGAACATTCCAAGGTACTTAAAATTCTTCGTTTCAGAGTCCACGA  293

seq1  TTTAGTG-AATTCTCTGCTTCAAATGTAAGTAGCCCGAAGGGATGTCACA  347
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGAAATTCTCTGCTTCAAATGTAAGTAGCCCGAAGGGATGTCACA  343

seq1  AG-AACCCGTTACCAGTCATCAAACAGTGGAAATTGACCTATAGGATTCT  396
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCGTTACCAGTCATCAAACAGTGGAAATTGACCTATAGGATTCT  393

seq1  TTCCTGGTGACAGTAGTGGACCAAGAAGAAAGTGAGAATTCAACAGAGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTGACAGTAGTGGACCAAGAAGAAAGTGAGAATTCAACAGAGAA  443

seq1  GTTTTCCCTGAGGTAAAATTGCTCTCCGCCTCTGCACTGGCCACATTTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCCTGAGGTAAAATTGCTCTCCGCCTCTGCACTGGCCACATTTCC  493

seq1  CTCAGCTGCTTCTTCCTTTCCAAAACCTGAGGTCCAGAGTTCCTCCGAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGCTTCTTCCTTTCCAAAACCTGAGGTCCAGAGTTCCTCCGAGA  543

seq1  AAGCAAGCTGTAGCATGAACACCAGAGAAGCAGCTAAACAGAGACCTTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCTGTAGCATGAACACCAGAGAAGCAGCTAAACAGAGACCTTCA  593

seq1  CCTGCCTGCAGAGTGAGCTGTGGTCAAAATCACAAGAAGGTAGCTTTACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGCAGAGTGAGCTGTGGTCAAAATCACAAGAAGGTAGCTTTACA  643

seq1  TTTTTCTTCTCCAGCTTAGAAGTCAAAGAAGGACTGGCCAAGCTCATATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCTCCAGCTTAGAAGTCAAAGAAGGACTGGCCAAGCTCATATC  693

seq1  TGACATCAGAAGCTCCTAACTACCCCTTTAAGTCACTGTCAGGACTAGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCAGAAGCTCCTAACTACCCCTTTAAGTCACTGTCAGGACTAGGA  743

seq1  GTGTCTGTGCTCTGAGTGAAGCATGATGAAGAAGACATCGTCTACTTCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTGCTCTGAGTGAAGCATGATGAAGAAGACATCGTCTACTTCTG  793

seq1  GGCTTCTTTGACTCCTGGATGGCCACTTAGCTCCACCCATTTTAGAAGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTTGACTCCTGGATGGCCACTTAGCTCCACCCATTTTAGAAGAG  843

seq1  GCTTTTTTAAATGTTATACTCACAGCTAACCTGGCTTTTCCACCGTACTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTAAATGTTATACTCACAGCTAACCTGGCTTTTCCACCGTACTG  893

seq1  CACTGTTGCCTGAGAACAGCTAGAGACTGAACTATCTGACTTGTAGTCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGCCTGAGAACAGCTAGAGACTGAACTATCTGACTTGTAGTCTC  943

seq1  TTCCTGGGTTTCTCTCTGTCTCTTGATCTGTCTGTCTCTCAATAACCAGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGTTTCTCTCTGTCTCTTGATCTGTCTGTCTCTCAATAACCAGC  993

seq1  CTAGGCTCCTGCTCGTGTCTTTCAAGAATTC  1027
      |||||||||||||||||| | ||||||||||
seq2  CTAGGCTCCTGCTCGTGTATATCAAGAATTC  1024