BAC Information

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BAC

Clone NameB6Ng01-085A16
Chromosome9 (Build37)
Map Location 85,405,116 - 85,576,349
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666672, BC023892
Downstream geneIbtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2, Mod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085A16.bB6Ng01-085A16.g
ACCDH898824DH898825
length4351,064
definitionDH898824|Mus musculus domesticus DNA, BAC clone: B6Ng01-085A16, 5' end.DH898825|Mus musculus domesticus DNA, BAC clone: B6Ng01-085A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,575,909 - 85,576,349)(85,405,116 - 85,406,185)
sequence
tcatgaattctactgtagtgcccttcaattcagaggcattttaaagcagc
catgtctgtgtagcgtagggcttgtaccttaaagtgacctgctgattgtg
aagaatactgattttatctgaaaagctccatggttaagttaatctgcaga
ttatgatgctgaacaaagatctctgttttcaggtttgtttggaacctgta
aaatgccagtgcaatttctcccttttatttgcatattttggggggaatcc
ctctgggagattattcaggaccaccctaacattagggttacataggaagc
ctatgaaactagtcaaactagtaatatgtaggcttagatttttaaaaaac
ctattttaaataagggttttcaaatgcttcacccctcctccctctctccc
actgcccaaaggaagggggaggggggaaagatggt
gaattccctgaccaattagcatcatgaaagacttggaatttatttgtact
cttggttttgttaactaagccaaacttattccattcatccatggattcct
atctaagttcttcatacatagagtatttttattatatgtccaatgtattg
gccttctaggacaaaccctatgttgagtatagcctgttgtaaaatcagta
aaatatccaagatgaatgtgataatgaatggtagagcagttctttcaaag
acagctagtgcaagaaacatattcaatagacttaacagacaaaagcaaga
ttggttggaagagcagagcagatctgcattatctaaatacgattggatag
ggttggtaagaatcataaagtgtattaaactaagatgtcatcctcaagtg
tgtctcaaatactaggaagcagagcctggagtgtgcataccctttgtcat
tgcactggatgagaggctaaactgggagggcaattgctatgagtttgagc
ccagtttgagatacaaagtaagctcacacttaaaatatatatagtaaaat
aaaaattacttatatattcatcctgaaattttcaatcaattctgctgtat
tattttctattctagtcagaaaaaaggtgtgttgttttcacatttttaaa
taatagctttctcacggtgaatttttatctatgttgcatgtgtcctgttt
tcaatggatataggcttgttaaccccttttattgtgaagtcattaaggga
gatgtatctgcttttcttgctttccctaggcagtactgagtaaaatagtc
tagactaaaaacagatctacatgaaatgctataccatatacaaaaaagtg
caagttatttcttggagcaccaacagaattaatgaatggatgaaggtgaa
tggacaaatatctagaacactttgatggggaaaccacaacttttggcttt
cttttatctattcccagtcctgacgtcacttcgaatagatgctttcatag
ccctcattccagaggtgcattgtgtttattactcacccaggatccccaac
ttacaatggacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_85575909_85576349
seq2: B6Ng01-085A16.b_43_483 (reverse)

seq1  ACCATCTTTCCCCCCTCCCCCTTCCTTTGGGCAGTGGGAGAGAGGGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTTCCCCCCTCCCCCTTCCTTTGGGCAGTGGGAGAGAGGGAGGA  50

seq1  GGGGTGAAGCATTTGAAAACCCTTATTTAAAATAGGTTTTTTAAAAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAAGCATTTGAAAACCCTTATTTAAAATAGGTTTTTTAAAAATCT  100

seq1  AAGCCTACATATTACTAGTTTGACTAGTTTCATAGGCTTCCTATGTAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTACATATTACTAGTTTGACTAGTTTCATAGGCTTCCTATGTAACC  150

seq1  CTAATGTTAGGGTGGTCCTGAATAATCTCCCAGAGGGATTCCCCCCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTTAGGGTGGTCCTGAATAATCTCCCAGAGGGATTCCCCCCAAAA  200

seq1  TATGCAAATAAAAGGGAGAAATTGCACTGGCATTTTACAGGTTCCAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAATAAAAGGGAGAAATTGCACTGGCATTTTACAGGTTCCAAACA  250

seq1  AACCTGAAAACAGAGATCTTTGTTCAGCATCATAATCTGCAGATTAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAAAACAGAGATCTTTGTTCAGCATCATAATCTGCAGATTAACTT  300

seq1  AACCATGGAGCTTTTCAGATAAAATCAGTATTCTTCACAATCAGCAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGGAGCTTTTCAGATAAAATCAGTATTCTTCACAATCAGCAGGTC  350

seq1  ACTTTAAGGTACAAGCCCTACGCTACACAGACATGGCTGCTTTAAAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAGGTACAAGCCCTACGCTACACAGACATGGCTGCTTTAAAATGC  400

seq1  CTCTGAATTGAAGGGCACTACAGTAGAATTCATGAGAATTC  441
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAATTGAAGGGCACTACAGTAGAATTCATGAGAATTC  441

seq1: chr9_85405116_85406185
seq2: B6Ng01-085A16.g_69_1132

seq1  GAATTCCCTGACCAATTAGCATCATGAAAGACTTGGAATTTATTTGTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGACCAATTAGCATCATGAAAGACTTGGAATTTATTTGTACT  50

seq1  CTTGGTTTTGTTAACTAAGCCAAACTTATTCCATTCATCCATGGATTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTTGTTAACTAAGCCAAACTTATTCCATTCATCCATGGATTCCT  100

seq1  ATCTAAGTTCTTCATACATAGAGTATTTTTATTATATGTCCAATGTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTTCTTCATACATAGAGTATTTTTATTATATGTCCAATGTATTG  150

seq1  GCCTTCTAGGACAAACCCTATGTTGAGTATAGCCTGTTGTAAAATCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTAGGACAAACCCTATGTTGAGTATAGCCTGTTGTAAAATCAGTA  200

seq1  AAATATCCAAGATGAATGTGATAATGAATGGTAGAGCAGTTCTTTCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCAAGATGAATGTGATAATGAATGGTAGAGCAGTTCTTTCAAAG  250

seq1  ACAGCTAGTGCAAGAAACATATTCAATAGACTTAACAGACAAAAGCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAGTGCAAGAAACATATTCAATAGACTTAACAGACAAAAGCAAGA  300

seq1  TTGGTTGGAAGAGCAGAGCAGATCTGCATTATCTAAATACGATTGGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGGAAGAGCAGAGCAGATCTGCATTATCTAAATACGATTGGATAG  350

seq1  GGTTGGTAAGAATCATAAAGTGTATTAAACTAAGATGTCATCCTCAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTAAGAATCATAAAGTGTATTAAACTAAGATGTCATCCTCAAGTG  400

seq1  TGTCTCAAATACTAGGAAGCAGAGCCTGGAGTGTGCATACCCTTTGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAATACTAGGAAGCAGAGCCTGGAGTGTGCATACCCTTTGTCAT  450

seq1  TGCACTGGATGAGAGGCTAAACTGGGAGGGCAATTGCTATGAGTTTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGGATGAGAGGCTAAACTGGGAGGGCAATTGCTATGAGTTTGAGC  500

seq1  CCAGTTTGAGATACAAAGTAAGCTCACACTTAAAATATATATAGTAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTGAGATACAAAGTAAGCTCACACTTAAAATATATATAGTAAAAT  550

seq1  AAAAATTACTTATATATTCATCCTGAAATTTTCAATCAATTCTGCTGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTACTTATATATTCATCCTGAAATTTTCAATCAATTCTGCTGTAT  600

seq1  TATTTTCTATTCTAGTCAGAAAAAAGGTGTGTTGTTTTCACATTTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTATTCTAGTCAGAAAAAAGGTGTGTTGTTTTCACATTTTTAAA  650

seq1  TAATAGCTTTCTCACGGTGAATTTTTATCTATGTTGCATGTGTCCTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCTTTCTCACGGTGAATTTTTATCTATGTTGCATGTGTCCTGTTT  700

seq1  TCAATGGATATAGGCTTGTTAACCCCTTTTATTGTGAAGTCATTAAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGATATAGGCTTGTTAACCCCTTTTATTGTGAAGTCATTAAGGGA  750

seq1  GATGTATCTGC-TTTCTTGCTTTCCCTAGGCAGTACTGAGTAAAATAGTC  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATGTATCTGCTTTTCTTGCTTTCCCTAGGCAGTACTGAGTAAAATAGTC  800

seq1  TAGACTAAAAACAGATCTACATGAAATGCTATACCATATACAAAAAAGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAAAAACAGATCTACATGAAATGCTATACCATATACAAAAAAGTG  850

seq1  CAAGTTATTTCTTGGAGCACCAACAAGAAATAAATGAATGGATGAAGGTG  899
      |||||||||||||||||||||||||   ||| ||||||||||||||||||
seq2  CAAGTTATTTCTTGGAGCACCAACA--GAATTAATGAATGGATGAAGGTG  898

seq1  AATGGACAAATATCTAGAACACTTTGATGGGGAAACCACAACTTTTGGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACAAATATCTAGAACACTTTGATGGGGAAACCACAACTTTTGGCT  948

seq1  TTC-TTTATCTATTTCCCAGTCCTGACGTCACTTCGAAATAAGATGCTTT  998
      ||| |||||||| |||||||||||||||||||||||||   |||||||||
seq2  TTCTTTTATCTA-TTCCCAGTCCTGACGTCACTTCGAA--TAGATGCTTT  995

seq1  CATAGCCCTCATTCCAGAAGTGCATTGTGTTTAAATAACTCACCCAGGAT  1048
      |||||||||||||||||| |||||||||||||  || |||||||||||||
seq2  CATAGCCCTCATTCCAGAGGTGCATTGTGTTT--ATTACTCACCCAGGAT  1043

seq1  CACCCAACTAACAAGTGACATG  1070
      | ||||||| ||||  ||||||
seq2  C-CCCAACTTACAATGGACATG  1064