BAC Information

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BAC

Clone NameB6Ng01-087C06
Chromosome6 (Build37)9 (Build37)
Map Location 18,835,442 - 18,835,96894,995,741 - 94,996,897
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087C06.bB6Ng01-087C06.g
ACCDH900351DH900352
length9801,146
definitionDH900351|Mus musculus domesticus DNA, BAC clone: B6Ng01-087C06, 5' end.DH900352|Mus musculus domesticus DNA, BAC clone: B6Ng01-087C06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(94,995,741 - 94,996,897)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggctttttcccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagatgagaatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccagatatttatatattgt
gactattgagtttgttgttccctaattctt
gaattcttggctgtttgggggcagaagagggcaaggaaaaagaaaacata
aattgaagtagaatactcaagttttattgaatagtcattgagctgccact
gagactgtgtttagatacttaagggacatatctcttgagaggcttgataa
tttcctaagtagggcatttgggcagaataatgaagaccaaatgctgatat
cctggtctctctacctactcatcctgggcccagtctctgaggatggtagt
ccctctgagatgcagaggaggagaggggtggacaggctgagccttgtctc
ttactctgcagctgccactgggcttttctgggagcagtctatattaaacc
tatacattttttaattgtcatcttgagatgccagctattgcccagggctc
gcattaagaaatctggggtgaacagggcacagccagaagcatggtgctct
gggctgtgtctcttaggtgactctgtcttcatattaaaattaaactcatt
tcctgcatagtttggaccagaaatgggcctcaaagggcatttgtaaaagg
cttggttctcaggactgtgttattgggaagtgatgaaaactttaagaagc
ctgcctgacccaataggaagtctctaggtcactgggagtatcctctaagg
ggctgtagaggccctggtcatttctctttctcttctttaacttcacatat
gttgttcaaccacatgttcccaccacagtgttgtcacaggcccaacacaa
cacatccaggtgttacagatgactaattttaaacctatgagcccaaacaa
tctccagcttataggtttgattatcacctcaggagtcattagtgtggcag
cagaaaactaatatcctgcctatctttgacatctatgcatctcaccaaag
ttctcccaaaagctaattttcattaattaatcctgtctagattgtctggc
tctttagacacaaatattttctcagcttggggaacatttttatgtttcat
tgtttgcttgtagctctcagcgtgttcttatgtcctgtcttttggctgca
gggtggatgcagttgttctttgatttatctcaatttcttttttttttgca
ctgatttcatttgaagggatttcttttgtcttcagattttttctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-087C06.b_54_581 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||| |||||||||||| || ||||
seq2  ACAACTGGTTGTTATCGTGTAGAAGAATGCGAATCGATCCATTCTCATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGAAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr9_94995741_94996897
seq2: B6Ng01-087C06.g_67_1212 (reverse)

seq1  TAAG-AAATATCTGAAGACAAAAAGAAATCGCCTTCAAATGGAAATCATG  49
      |||| ||| |||||||||| |||||||||| ||||||||| ||||||| |
seq2  TAAGAAAAAATCTGAAGAC-AAAAGAAATC-CCTTCAAAT-GAAATCA-G  46

seq1  TGCAAAAAGAAAAGAAATTTGAGATAAATTCAAAGAACAACTGCATTCAC  99
      |||||||| |||||||| |||||||||| ||||||||||||||||| |||
seq2  TGCAAAAAAAAAAGAAA-TTGAGATAAA-TCAAAGAACAACTGCATCCAC  94

seq1  ACCTGGCAAGCCAGAAGACAGGACATAAGAACACGCTGAGAGCTACAAGC  149
       ||||   ||||| ||||||||||||||||||||||||||||||||||||
seq2  -CCTG--CAGCCAAAAGACAGGACATAAGAACACGCTGAGAGCTACAAGC  141

seq1  AAACAATGAAACAATAAAAATGTTCCCCAAGCTGAG-AAATATTTGGTGT  198
      |||||||||||| ||||||||||||||||||||||| |||||||| ||||
seq2  AAACAATGAAAC-ATAAAAATGTTCCCCAAGCTGAGAAAATATTT-GTGT  189

seq1  CTTAAAGAGCCAGACAATCTTAGACAGGATTAATTAATGAAAATTAGCCT  248
      | ||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  C-TAAAGAGCCAGACAATC-TAGACAGGATTAATTAATGAAAATTAG-CT  236

seq1  TTTGGGAGAACTTTGGTGAGATGCATAGATGTCAAAGATAGGCAGGATAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAGAACTTTGGTGAGATGCATAGATGTCAAAGATAGGCAGGATAT  286

seq1  TAGTTTTCTGCTGCCACACTAATGACTCCTGAGGTGATAATC-AACCTAT  347
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGTTTTCTGCTGCCACACTAATGACTCCTGAGGTGATAATCAAACCTAT  336

seq1  AAGCTGGAGATTGTTTGGGCTCATAGGTTTAAAATTAGTCATCTGTAACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAGATTGTTTGGGCTCATAGGTTTAAAATTAGTCATCTGTAACA  386

seq1  CCTGGATGTGTTGTGTTGGGCCTGTGACAACACTGTGGTGGGAACATGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATGTGTTGTGTTGGGCCTGTGACAACACTGTGGTGGGAACATGTG  436

seq1  GTTGAACAACATATGTGAAGTTAAAGAAGAGAAAGAGAAATGACCAGGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACAACATATGTGAAGTTAAAGAAGAGAAAGAGAAATGACCAGGGC  486

seq1  CTCTACAGCCCCTTAGAGGATACTCCCAGTGACCTAGAGACTTCCTATTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAGCCCCTTAGAGGATACTCCCAGTGACCTAGAGACTTCCTATTG  536

seq1  GGTCAGGCAGGCTTCTTAAAGTTTTCATCACTTCCCAATAACACAGTCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGCAGGCTTCTTAAAGTTTTCATCACTTCCCAATAACACAGTCCT  586

seq1  GAGAACCAAGCCTTTTACAAATGCCCTTTGAGGCCCATTTCTGGTCCAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCAAGCCTTTTACAAATGCCCTTTGAGGCCCATTTCTGGTCCAAA  636

seq1  CTATGCAGGAAATGAGTTTAATTTTAATATGAAGACAGAGTCACCTAAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAGGAAATGAGTTTAATTTTAATATGAAGACAGAGTCACCTAAGA  686

seq1  GACACAGCCCAGAGCACCATGCTTCTGGCTGTGCCCTGTTCACCCCAGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCCCAGAGCACCATGCTTCTGGCTGTGCCCTGTTCACCCCAGAT  736

seq1  TTCTTAATGCGAGCCCTGGGCAATAGCTGGCATCTCAAGATGACAATTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATGCGAGCCCTGGGCAATAGCTGGCATCTCAAGATGACAATTAA  786

seq1  AAAATGTATAGGTTTAATATAGACTGCTCCCAGAAAAGCCCAGTGGCAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTATAGGTTTAATATAGACTGCTCCCAGAAAAGCCCAGTGGCAGC  836

seq1  TGCAGAGTAAGAGACAAGGCTCAGCCTGTCCACCCCTCTCCTCCTCTGCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGTAAGAGACAAGGCTCAGCCTGTCCACCCCTCTCCTCCTCTGCA  886

seq1  TCTCAGAGGGACTACCATCCTCAGAGACTGGGCCCAGGATGAGTAGGTAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGGGACTACCATCCTCAGAGACTGGGCCCAGGATGAGTAGGTAG  936

seq1  AGAGACCAGGATATCAGCATTTGGTCTTCATTATTCTGCCCAAATGCCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCAGGATATCAGCATTTGGTCTTCATTATTCTGCCCAAATGCCCT  986

seq1  ACTTAGGAAATTATCAAGCCTCTCAAGAGATATGTCCCTTAAGTATCTAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGAAATTATCAAGCCTCTCAAGAGATATGTCCCTTAAGTATCTAA  1036

seq1  ACACAGTCTCAGTGGCAGCTCAATGACTATTCAATAAAACTTGAGTATTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTCTCAGTGGCAGCTCAATGACTATTCAATAAAACTTGAGTATTC  1086

seq1  TACTTCAATTTATGTTTTCTTTTTCCTTGCCCTCTTCTGCCCCCAAACAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAATTTATGTTTTCTTTTTCCTTGCCCTCTTCTGCCCCCAAACAG  1136

seq1  CCAAGAATTC  1157
      ||||||||||
seq2  CCAAGAATTC  1146