BAC Information

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BAC

Clone NameB6Ng01-087C16
Chromosome9 (Build37)
Map Location 6,391,428 - 6,392,435
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919
Downstream geneLOC100039400, LOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087C16.bB6Ng01-087C16.g
ACCDH900371DH900372
length1,0231,003
definitionDH900371|Mus musculus domesticus DNA, BAC clone: B6Ng01-087C16, 5' end.DH900372|Mus musculus domesticus DNA, BAC clone: B6Ng01-087C16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgccctgccttaaccacttgttgacatgtgaaaaggaacaaa
aaggcttctaacactggagaaagttcaaggccagtcatacctgggaaagc
tgtaatgtcccacagttctggttccgcctcgagaatgagggatctccctt
gcgccagtgtgatggtagttcccgggtttctcggcgccacttatcctgag
cttttgaccctgccggcaagaacacactcaggacaactggaatcttctgt
ggcaaagcttttattgcttacttatcaggagggaagaccccgaacccaaa
aaatggcgctgcttatatagctcgcagtgtgacgtttcatcacctgatgt
ggcatgacagctcctgattcgttgctcacccatcaccccattactacgcc
ctgagatgggcagtgactaggcgtgaattcactcttgcagttgcgcataa
ggcttttttactagttaggcacagtggaagccagtgccatcttataatgg
cgattgctcacggcacggctctccacacctggcttctttttccttctaat
aaaacacaacactgggaatgttttcaaaggaagttttaggaaaattggct
tcttctctcccttttctttcctgacactatgagctgagaagttttcttgc
tttgccatatgactctttcataggtagttatttattgtaggccccaaagc
agtaggaccaacaaacaaatcatgtaccaagacttctgaaactgagaact
cagataacccttttttgctaagacagtaaccacaagggctttatatacaa
atagaaagatgacacatattctttccaataattactactcaccacatgca
tgtgtatgtgcaagcacacatgttcctacaggactaagttctagtaagga
gcaacatggttcctgaataagatcttccattgcccattttccatggacat
gccagttttagtactattctttcaccaaatgatcttcacaggtataggag
agagagagagagagggagagaga
gaattcctccccctcctttgatttcctgttctgatgtaatttatttcttg
tgttttcttggatgtaattaacctctttagggcgaagttttccttctaga
acattctgtaggctggatttggagacagatattgctcaaatatattttgc
tatggattgctgtggatgtattattttcactttctatcataattgaaagt
ttttctgtgtatagttttctgggatggcttctgttgtctctcagtgtttg
ttcaccatctgttcagagccttctgctttataggtctccattgagaagac
aggtattattctaatacatcttaaatcttacttggtctttttcccttgca
acatttaacatcccttctttgctctgtgtgtctagtattttgattattat
gcagaatggggatttttttctcatccagtctagtttgtgtttaatataat
tcttgtaccttcatagacatctcctttagattaagtaaattttcttcaaa
attggcagatctatctgcattttagactagtcttttatctgtagagatgt
gtgaaaaagcttaagcatatatagcatatatatatatatatatatatata
ttctagacaagaaggaggaatttcagcatacctagactagacagcaaggg
actacataggaagagagactattccagcctatctacaggtaatgttggag
atcaggggaagttcctcagtcacagtttgtgaaacaaatgagatttcata
ccatcttccccgaggctgctctgaccttgcattaactcaaacataagaaa
atatttttcacctcaagcattatggctctcccgacatgaggaccaaattt
ttgaaccactaagtttcacactaatattggattgcactataccttgcgaa
agcaaactcagtttcagacatttatcacttaaaaagcacattaaacttca
ctactacactgcaaatcggctgccaactatgactatgatgcatgacgatg
cag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_6391428_6392435
seq2: B6Ng01-087C16.g_66_1061

seq1  GAATTCCTCCCCCTCCTTTGATTTCCTGTTCTGATGTAATTTATTTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCCCTCCTTTGATTTCCTGTTCTGATGTAATTTATTTCTTG  50

seq1  TGTTTTCTTGGATGTAATTAACCTCTTTAGGTCGAAGTTTTCCTTCTAGA  100
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTTTTCTTGGATGTAATTAACCTCTTTAGGGCGAAGTTTTCCTTCTAGA  100

seq1  ACATTCTGTAGGCTGGATTTGTAGACAGATATTGCTCAAATATATTTTGC  150
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACATTCTGTAGGCTGGATTTGGAGACAGATATTGCTCAAATATATTTTGC  150

seq1  TATGGATTGTTGTGGATGTATTATTTTCACTTTCTATCATAATTGAAAGT  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATTGCTGTGGATGTATTATTTTCACTTTCTATCATAATTGAAAGT  200

seq1  TTTTCTGTGTATAGTTTTCTGGGATGGCTTCTGTTGTCTCTCAGTGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTGTATAGTTTTCTGGGATGGCTTCTGTTGTCTCTCAGTGTTTG  250

seq1  TTCACCATCTGTTCAGAGCCTTCTGCTTTATAGGTCTCCATTGAGAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCATCTGTTCAGAGCCTTCTGCTTTATAGGTCTCCATTGAGAAGAC  300

seq1  AGGTATTATTCTAATAGATCTTAAATCTTACTTGGTCTTTTTCCCTTGCA  350
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGGTATTATTCTAATACATCTTAAATCTTACTTGGTCTTTTTCCCTTGCA  350

seq1  ACATTTAACATCCCTTCTTTGCTCTGTGTGTCTAGTATTTTGATTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAACATCCCTTCTTTGCTCTGTGTGTCTAGTATTTTGATTATTAT  400

seq1  GCAGTATGGGGATTTTTTTCTCATCCAGTCTAGTTTGTGTTTAATATAAT  450
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGGGGATTTTTTTCTCATCCAGTCTAGTTTGTGTTTAATATAAT  450

seq1  TCTTGTACCTTCATAGACATCTCCTTTAGATTAAGTAAATTTTCTTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTACCTTCATAGACATCTCCTTTAGATTAAGTAAATTTTCTTCAAA  500

seq1  ATTGGCAGATCTATCTGCATTTTAGACTAGTCTTTTATCTGTAGAGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAGATCTATCTGCATTTTAGACTAGTCTTTTATCTGTAGAGATGT  550

seq1  GTGAAAAAGCTTAAGCATATATAGCATATATATATATATATATATATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAAGCTTAAGCATATATAGCATATATATATATATATATATATATA  600

seq1  TTCTAGACAAGAAAAGGTAATTTCAGCATACCTAGACTAGACAGCAAGGG  650
      |||||||||||||   | ||||||||||||||||||||||||||||||||
seq2  TTCTAGACAAGAAGGAGGAATTTCAGCATACCTAGACTAGACAGCAAGGG  650

seq1  ACTAGATAGGAAGAAAGACAATTCCAGCAGATCTAGAGGTAAGGTTGGAG  700
      |||| ||||||||| |||| ||||||||  ||||| |||||| |||||||
seq2  ACTACATAGGAAGAGAGACTATTCCAGCCTATCTACAGGTAATGTTGGAG  700

seq1  ATCAAGGGAAGTTCCTCAGTCACAGTTTGTGAAACAAAGGAGATTTCATA  750
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCAGGGGAAGTTCCTCAGTCACAGTTTGTGAAACAAATGAGATTTCATA  750

seq1  CCAGCTTCCCCGAGGCTGCTCTGACCTTGCATTAACTCAAACATAAGAAA  800
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCCCCGAGGCTGCTCTGACCTTGCATTAACTCAAACATAAGAAA  800

seq1  AAATTTTTCAACTCAAGCATTATGGCTCTCCCGTAATGAGGACCAAATTT  850
      | |||||||| ||||||||||||||||||||||  |||||||||||||||
seq2  ATATTTTTCACCTCAAGCATTATGGCTCTCCCGACATGAGGACCAAATTT  850

seq1  TTGAACTACTAAGTTTCTTAGTAATATTGGATTGCAACTATAACCTTGGG  900
      |||||| ||||||||||  | |||||||||||||| ||||| |||||| |
seq2  TTGAACCACTAAGTTTCACACTAATATTGGATTGC-ACTAT-ACCTTGCG  898

seq1  AAAGCAAAACTCAATTTCAAAACAATTTATCACTTTAAAAATCAACATTA  950
      ||||| ||||||| ||||| |   ||||||||| ||||||| | ||||| 
seq2  AAAGC-AAACTCAGTTTCAGA--CATTTATCAC-TTAAAAAGC-ACATT-  942

seq1  AAACTTCACTACTACACTGCAAAATTTGGCTGCCAACTTATATCTATGAA  1000
      |||||||||||||||||||||||  | |||||||||| |||  ||||| |
seq2  AAACTTCACTACTACACTGCAAA--TCGGCTGCCAAC-TATGACTATG-A  988

seq1  TGCATGAC  1008
      ||||||||
seq2  TGCATGAC  996