BAC Information

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BAC

Clone NameB6Ng01-087F03
Chromosome9 (Build37)
Map Location 47,976,329 - 48,098,487
singlet/doubletdoublet
Overlap geneD930028F11Rik
Upstream geneCadm1, LOC100043303
Downstream gene4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087F03.bB6Ng01-087F03.g
ACCDH900480DH900481
length736729
definitionDH900480|Mus musculus domesticus DNA, BAC clone: B6Ng01-087F03, 5' end.DH900481|Mus musculus domesticus DNA, BAC clone: B6Ng01-087F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,976,329 - 47,977,064)(48,097,758 - 48,098,487)
sequence
gaattctcacatccataggggttctagacctaaggccccatgtaactgag
ggatgactatagttaacaagtgggtgtagggtggagtcaggatgacaaac
tgaagttgattgacagaaaaatgttgtctttttcaggaaaatttgttagg
tataacagcagctaacatttattgaaccaagactatgccctgggcagtaa
taatgtgacttcagtacattactcttaaaacccgttcaaaaaacactgca
aagcgggtaatcttattttcttctactgtagatgaggagatagagaccca
aaaatgcatgtccgaggaccacacagctaagtcaggcaggaacagagcct
ggaactagagcctataaaagcatgaaaagccgttttcttaaccatcacat
ttttatttttatttttatatttttttttatgtaagtcagcatgagttcgg
atttagacttatttcagtatgccatttgaatgtccatgggggcaatgtct
acaatgcatttggaaaattgtaaatagagtttggagcagtgattggaaag
ggaattgggggagcgagcatgagtggtcttgaagagagcagaagacccag
tgtaggacccagggaccatggctggggaagggggaaggaaagccaaaggc
caagaaagcgaaatcacaaatgctgaaggctgttcacaatgagcactgtc
atacaagctggagagggggatgggagtgaggagagg
gaattcttcattcagcttctccttgggtctcatccaatgctcatagacct
cttcctgcccaagcaggatctagaaatgagtccttatcttggcttatggt
cagtctgggtagagagacctcaaaatcagataggaaggaaactaacatta
aaaattacagccaagtgcttcttgcaaggtggatctactgacagcgagtc
cctacctgattttatctgaaaaagccttaccttcattgacagatgtttta
gctgtggatagaactgtgttcacctttggaaagaaatagatatttttaaa
aaacattttaaaagatcctcaaatactgctcttccacgtcgtctcagctc
atatatatatatgttgttgtaaagaagccagtcagcatttgcatcatctc
tcacttgctacatcctttatctgtcttttctggctgcctccagcagtgtc
cccctttccaacaggactatcacggcacagggactttgttttaaatgagt
cctttccaagttgtgaaaatctccaaactctatccacacaggactttctc
agtttaggatatttgctgttttatttattttaaactgtctgcatgcatgt
atgtttgtgtggggattggtgtgtgtgcatggggtgcccataggcccaca
gacaccacaggatgtaggtcgtctggagcaggggttccagggagttgttg
agttatgtgatgtgagatttaggaactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_47976329_47977064
seq2: B6Ng01-087F03.b_47_782

seq1  GAATTCTCACATCCATAGGGGTTCTAGACCTAAGGCCCCATGTAACTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACATCCATAGGGGTTCTAGACCTAAGGCCCCATGTAACTGAG  50

seq1  GGATGACTATAGTTAACAAGTGGGTGTAGGGTGGAGTCAGGATGACAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACTATAGTTAACAAGTGGGTGTAGGGTGGAGTCAGGATGACAAAC  100

seq1  TGAAGTTGATTGACAGAAAAATGTTGTCTTTTTCAGGAAAATTTGTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTGATTGACAGAAAAATGTTGTCTTTTTCAGGAAAATTTGTTAGG  150

seq1  TATAACAGCAGCTAACATTTATTGAACCAAGACTATGCCCTGGGCAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGCAGCTAACATTTATTGAACCAAGACTATGCCCTGGGCAGTAA  200

seq1  TAATGTGACTTCAGTACATTACTCTTAAAACCCGTTCAAAAAACACTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGACTTCAGTACATTACTCTTAAAACCCGTTCAAAAAACACTGCA  250

seq1  AAGCGGGTAATCTTATTTTCTTCTACTGTAGATGAGGAGATAGAGACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGGGTAATCTTATTTTCTTCTACTGTAGATGAGGAGATAGAGACCCA  300

seq1  AAAATGCATGTCCGAGGACCACACAGCTAAGTCAGGCAGGAACAGAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCATGTCCGAGGACCACACAGCTAAGTCAGGCAGGAACAGAGCCT  350

seq1  GGAACTAGAGCCTATAAAAGCATGAAAAGCCGTTTTCTTAACCATCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAGAGCCTATAAAAGCATGAAAAGCCGTTTTCTTAACCATCACAT  400

seq1  TTTTATTTTTATTTTTATATTTTTTTTTATGTAAGTCAGCATGAGTTCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTATTTTTATATTTTTTTTTATGTAAGTCAGCATGAGTTCGG  450

seq1  ATTTAGACTTATTTCAGTATGCCATTTGAATGTCCATGGGGGCAATGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGACTTATTTCAGTATGCCATTTGAATGTCCATGGGGGCAATGTCT  500

seq1  ACAATGCATTTGGAAAATTGTAAATAGAGTTTGGAGCAGTGATTGGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCATTTGGAAAATTGTAAATAGAGTTTGGAGCAGTGATTGGAAAG  550

seq1  GGAATTGGGGGAGCGAGCATGAGTGGTCTTGAAGAGAGCAGAAGACCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGGGGGAGCGAGCATGAGTGGTCTTGAAGAGAGCAGAAGACCCAG  600

seq1  TGTAGGACCCAGGGACCATGGCTGGGGAAGGGGGAAGGAAAGCCAAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGACCCAGGGACCATGGCTGGGGAAGGGGGAAGGAAAGCCAAAGGC  650

seq1  CAAGAAAGCGAAATCACAAATGCTGAAGGCTGTTCACAATGAGCACTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGCGAAATCACAAATGCTGAAGGCTGTTCACAATGAGCACTGTC  700

seq1  ATACAAGCTGGAGAGGGGGATGGGAGTGAGGAGAGG  736
      ||||||||||||||||||||||||||||||||||||
seq2  ATACAAGCTGGAGAGGGGGATGGGAGTGAGGAGAGG  736

seq1: chr9_48097758_48098487
seq2: B6Ng01-087F03.g_71_799 (reverse)

seq1  CCAGTTCCTAACTCTCACATCACATAACTCAACAACTCCCTGGAACCCCT  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCTAAATCTCACATCACATAACTCAACAACTCCCTGGAACCCCT  50

seq1  GCTCCAGACGACCTGACATCCTGTGGTGTCTGTGGGCCTATGGGCACCCC  100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCTCCAGACGACCT-ACATCCTGTGGTGTCTGTGGGCCTATGGGCACCCC  99

seq1  ATGCACACACACCAATCCCCACACAAACATACATGCATGCAGACAGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACACACCAATCCCCACACAAACATACATGCATGCAGACAGTTTA  149

seq1  AAATAAATAAAACAGCAAATATCCTAAACTGAGAAAGTCCTGTGTGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAAACAGCAAATATCCTAAACTGAGAAAGTCCTGTGTGGATA  199

seq1  GAGTTTGGAGATTTTCACAACTTGGAAAGGACTCATTTAAAACAAAGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGGAGATTTTCACAACTTGGAAAGGACTCATTTAAAACAAAGTCC  249

seq1  CTGTGCCGTGATAGTCCTGTTGGAAAGGGGGACACTGCTGGAGGCAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCGTGATAGTCCTGTTGGAAAGGGGGACACTGCTGGAGGCAGCCA  299

seq1  GAAAAGACAGATAAAGGATGTAGCAAGTGAGAGATGATGCAAATGCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACAGATAAAGGATGTAGCAAGTGAGAGATGATGCAAATGCTGAC  349

seq1  TGGCTTCTTTACAACAACATATATATATATGAGCTGAGACGACGTGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTTTACAACAACATATATATATATGAGCTGAGACGACGTGGAAG  399

seq1  AGCAGTATTTGAGGATCTTTTAAAATGTTTTTTAAAAATATCTATTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTATTTGAGGATCTTTTAAAATGTTTTTTAAAAATATCTATTTCTT  449

seq1  TCCAAAGGTGAACACAGTTCTATCCACAGCTAAAACATCTGTCAATGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGTGAACACAGTTCTATCCACAGCTAAAACATCTGTCAATGAAG  499

seq1  GTAAGGCTTTTTCAGATAAAATCAGGTAGGGACTCGCTGTCAGTAGATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCTTTTTCAGATAAAATCAGGTAGGGACTCGCTGTCAGTAGATCC  549

seq1  ACCTTGCAAGAAGCACTTGGCTGTAATTTTTAATGTTAGTTTCCTTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCAAGAAGCACTTGGCTGTAATTTTTAATGTTAGTTTCCTTCCTA  599

seq1  TCTGATTTTGAGGTCTCTCTACCCAGACTGACCATAAGCCAAGATAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTTGAGGTCTCTCTACCCAGACTGACCATAAGCCAAGATAAGGA  649

seq1  CTCATTTCTAGATCCTGCTTGGGCAGGAAGAGGTCTATGAGCATTGGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCTAGATCCTGCTTGGGCAGGAAGAGGTCTATGAGCATTGGATG  699

seq1  AGACCCAAGGAGAAGCTGAATGAAGAATTC  730
      ||||||||||||||||||||||||||||||
seq2  AGACCCAAGGAGAAGCTGAATGAAGAATTC  729