BAC Information

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BAC

Clone NameB6Ng01-087L09
Chromosome9 (Build37)
Map Location 10,605,331 - 10,759,456
singlet/doubletdoublet
Overlap geneLOC665178
Upstream geneCntn5, LOC665154, LOC100039970
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087L09.bB6Ng01-087L09.g
ACCDH900760DH900761
length1,0661,043
definitionDH900760|Mus musculus domesticus DNA, BAC clone: B6Ng01-087L09, 5' end.DH900761|Mus musculus domesticus DNA, BAC clone: B6Ng01-087L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,605,331 - 10,606,061)(10,758,393 - 10,759,456)
sequence
gaattccaggaacttcatagcctagaagacagaaacgaccagttatacat
gagaacaattttctatcctgaaaatgattcactctggaacactgaagatc
atcttgcaggaacaggactggtccccttgaaacaaagggttaacagttag
caggcttgcatattcttatccaaacaatattcaggatcccatgtttattt
gtttcttttaaagcatataatacataaagaaagctggcaacaagtccctt
ccggtcagtgccagcaccaggtcaccttgggcgtggagtgggcagacacc
cccaaggtctcctagaggactctccacgcaatcataggaccaccagtgag
tggaacacaacttctgttctagtccaatcaagcaggaactgagacagcat
taggaaagcaggaaacctggcccgaacagggtcagaagtcctttccagtc
agcaccagcactaggtcacctgggcacagagtcagcggacacccccaagg
tccctaaaggacagcttctaagacagaccccacttcgggctccagacatc
gagtcaactaccctgccagaggagaggtgtccgccctgctcggaagagct
ttgctggagcacctgggcaagccatcttggtttcgagatccctctgagac
tagtctgtacaggtgagagtgtggactacagaagataacaacttctgtga
caggctgaagcaacacagattctgggacaggtcttgtttcaggccttaat
cttttgccaggagacagatctgaacacaccagatatctgtgtaccttccc
tgtaagaggagagcttgcctatagagagtgctctgaccactgaaactcag
aggagagatctagtctcccaggtctgctaatagagcctaacagaatcacg
agagaacaatctctaaccagagacaactaaacaactatctccagagatta
ccagatggcaaaggcaaatgtagaatcttaccaacagaaaccaagaccac
tcacatcatcagactgcagcactcccacctcgcccagtctgggcacccca
acacacccgaaaagct
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactctagtcagaatggctaagatcaaaaactcaggtgaaagc
agatgctggtgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggatcccgcaatacctctcttgggc
atatatccagaagatgtcctaaccggtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggttacagaaaatgtggggcatttacacaatg
gaatactactcagctattaaaaaaatgaatttatgaaattcgtaagagtt
cttaatgtttttcctttattttttcctctggttaaatcacaccattagat
gagttttgcaaccaatatgtttatatttactcttgtaacagtactttaaa
gtatttaggaatagagaatgatgcttccaacaagagagaaacaatatttt
cagcaaaagaatttacatgggagacaaaattacctgaaattggaaaaaaa
aaagtctacatcccaatgcagtctgtgatacagctgtgtaaactgacaca
tttgtgacacatataaaaacaataaaatacataaaaagattgatttcttc
caggaagtaatgccaaggccttgggtcatgcattaggtttggtttgattt
atttcacatgcatttttattaataataatctccttccctaaaccatctac
gaatgtaattaaatctttgcttaatttcacagtgtgttaatagctcatca
cattttaaaatgtacagctataaaaagaacactatgacagatgttatgca
aattgtagctagcgatgatcctgaatgatactggtgggaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_10605331_10606061
seq2: B6Ng01-087L09.b_48_778

seq1  GAATTCCAGGAACTTCATAGCCTAGAAGACAGAAACGACCAGTTATACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAACTTCATAGCCTAGAAGACAGAAACGACCAGTTATACAT  50

seq1  GAGAACAATTTTCTATCCTGAAAATGATTCACTCTGGAACACTGAAGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAATTTTCTATCCTGAAAATGATTCACTCTGGAACACTGAAGATC  100

seq1  ATCTTGCAGGAACAGGACTGGTCCCCTTGAAACAAAGGGTTAACAGTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCAGGAACAGGACTGGTCCCCTTGAAACAAAGGGTTAACAGTTAG  150

seq1  CAGGCTTGCATATTCTTATCCAAACAATATTCAGGATCCCATGTTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGCATATTCTTATCCAAACAATATTCAGGATCCCATGTTTATTT  200

seq1  GTTTCTTTTAAAGCATATAATACATAAAGAAAGCTGGCAACAAGTCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTTAAAGCATATAATACATAAAGAAAGCTGGCAACAAGTCCCTT  250

seq1  CCGGTCAGTGCCAGCACCAGGTCACCTTGGGCGTGGAGTGGGCAGACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCAGTGCCAGCACCAGGTCACCTTGGGCGTGGAGTGGGCAGACACC  300

seq1  CCCAAGGTCTCCTAGAGGACTCTCCACGCAATCATAGGACCACCAGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGTCTCCTAGAGGACTCTCCACGCAATCATAGGACCACCAGTGAG  350

seq1  TGGAACACAACTTCTGTTCTAGTCCAATCAAGCAGGAACTGAGACAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACACAACTTCTGTTCTAGTCCAATCAAGCAGGAACTGAGACAGCAT  400

seq1  TAGGAAAGCAGGAAACCTGGCCCGAACAGGGTCAGAAGTCCTTTCCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGCAGGAAACCTGGCCCGAACAGGGTCAGAAGTCCTTTCCAGTC  450

seq1  AGCACCAGCACTAGGTCACCTGGGCACAGAGTCAGCGGACACCCCCAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGCACTAGGTCACCTGGGCACAGAGTCAGCGGACACCCCCAAGG  500

seq1  TCCCTAAAGGACAGCTTCTAAGACAGACCCCACTTCGGGCTCCAGACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAAGGACAGCTTCTAAGACAGACCCCACTTCGGGCTCCAGACATC  550

seq1  GAGTCAACTACCCTGCCAGAGGAGAGGTGTCCGCCCTGCTCGGAAGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAACTACCCTGCCAGAGGAGAGGTGTCCGCCCTGCTCGGAAGAGCT  600

seq1  TTGCTGGAGCACCTGGGCAAGCCATCTTGGTTTCGAGATCCCTCTGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGAGCACCTGGGCAAGCCATCTTGGTTTCGAGATCCCTCTGAGAC  650

seq1  TAGTCTGTACAGGTGAGAGTGTGGACTACAGAAGATAACAACTTCTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGTACAGGTGAGAGTGTGGACTACAGAAGATAACAACTTCTGTGA  700

seq1  CAGGCTGAAGCAACACAGATTCTGGGACAGG  731
      |||||||||||||||||||||||||||||||
seq2  CAGGCTGAAGCAACACAGATTCTGGGACAGG  731

seq1: chr9_10758393_10759456
seq2: B6Ng01-087L09.g_66_1108 (reverse)

seq1  TTCTTCCCACCCAGTGATCATTCAGGGATCAAATCTGCTAGCTAACAATT  50
      ||||||||| ||||| |||||||| |||||  ||| ||||||| ||||||
seq2  TTCTTCCCA-CCAGT-ATCATTCA-GGATC--ATC-GCTAGCT-ACAATT  43

seq1  TGCCATTAAACATTCTGTCAATAGGTTGTTCTTTTTATAGCTTGTTACAT  100
      || |||  |||| |||||| ||||  ||||||||||||||||   |||||
seq2  TG-CAT--AACA-TCTGTC-ATAG--TGTTCTTTTTATAGCT--GTACAT  84

seq1  TTTAAAATGTGATTGAGCTAATTAAACACAACTGTGAAATTAAGCAAAGA  150
      |||||||||||| |||||||  | ||||| ||||||||||||||||||||
seq2  TTTAAAATGTGA-TGAGCTA--TTAACAC-ACTGTGAAATTAAGCAAAGA  130

seq1  TTTAATTAACATTCGTAGATGGTTTAGGGAAGGAGATTATTATTAATAAA  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATT-ACATTCGTAGATGGTTTAGGGAAGGAGATTATTATTAATAAA  179

seq1  AATGCATGTGAAATAAATCAAACCAAACCTAATGCATGACCCAAGGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGTGAAATAAATCAAACCAAACCTAATGCATGACCCAAGGCCTT  229

seq1  GGCATTACTTCCTGGAAGAAATCAATCTTTTTATGTATTTTATTGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTACTTCCTGGAAGAAATCAATCTTTTTATGTATTTTATTGTTTTT  279

seq1  ATATGTGTCACAAATGTGTCAGTTTACACAGCTGTATCACAGACTGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTCACAAATGTGTCAGTTTACACAGCTGTATCACAGACTGCATT  329

seq1  GGGATGTAGACTTTTTTTTTTCCAATTTCAGGTAATTTTGTCTCCCATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTAGACTTTTTTTTTTCCAATTTCAGGTAATTTTGTCTCCCATGT  379

seq1  AAATTCTTTTGCTGAAAATATTGTTTCTCTCTTGTTGGAAGCATCATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTTTGCTGAAAATATTGTTTCTCTCTTGTTGGAAGCATCATTCT  429

seq1  CTATTCCTAAATACTTTAAAGTACTGTTACAAGAGTAAATATAAACATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTAAATACTTTAAAGTACTGTTACAAGAGTAAATATAAACATAT  479

seq1  TGGTTGCAAAACTCATCTAATGGTGTGATTTAACCAGAGGAAAAAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCAAAACTCATCTAATGGTGTGATTTAACCAGAGGAAAAAATAAA  529

seq1  GGAAAAACATTAAGAACTCTTACGAATTTCATAAATTCATTTTTTTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAACATTAAGAACTCTTACGAATTTCATAAATTCATTTTTTTAATA  579

seq1  GCTGAGTAGTATTCCATTGTGTAAATGCCCCACATTTTCTGTAACCATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTAGTATTCCATTGTGTAAATGCCCCACATTTTCTGTAACCATTC  629

seq1  CTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAACA  679

seq1  AGGCTGCTATGAACATAGTGGAGCATGTGTTCTTCTTACCGGTTAGGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTATGAACATAGTGGAGCATGTGTTCTTCTTACCGGTTAGGACA  729

seq1  TCTTCTGGATATATGCCCAAGAGAGGTATTGCGGGATCCTCCAGTAGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGATATATGCCCAAGAGAGGTATTGCGGGATCCTCCAGTAGTAC  779

seq1  TATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTA  829

seq1  CAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCCCTTTCTCCACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCCCTTTCTCCACAT  879

seq1  CCTCACCAGCATCTGCTTTCACCTGAGTTTTTGATCTTAGCCATTCTGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCAGCATCTGCTTTCACCTGAGTTTTTGATCTTAGCCATTCTGAC  929

seq1  TAGAGTGAAGTGGAATCTCAGTGTTGTTTTGATTTGCATTTCCCTGATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGAAGTGGAATCTCAGTGTTGTTTTGATTTGCATTTCCCTGATGA  979

seq1  TTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCC  1029

seq1  TCAGGTGAGAATTC  1064
      ||||||||||||||
seq2  TCAGGTGAGAATTC  1043