BAC Information

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BAC

Clone NameB6Ng01-087P11
Chromosome9 (Build37)
Map Location 37,042,098 - 37,194,596
singlet/doubletdoublet
Overlap geneSlc37a2, LOC100042561, Ccdc15, Hepacam
Upstream geneLOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik
Downstream geneRobo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087P11.bB6Ng01-087P11.g
ACCDH900948DH900949
length1,194980
definitionDH900948|Mus musculus domesticus DNA, BAC clone: B6Ng01-087P11, 5' end.DH900949|Mus musculus domesticus DNA, BAC clone: B6Ng01-087P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,042,098 - 37,043,306)(37,193,618 - 37,194,596)
sequence
gaattctacatatcacttgcttttcccgccttgtgcatctgcacttctca
ggtctttatgtgtctcaatagatggtctaactatggtaatctctaatttc
cttttatttttcttatggttttgaaatgagaatcatgcaacccagggtct
cctgaaactcactctgtagctgaggaagactttgaactcctgattccccc
tgcctttacctcccaaatcctgggattacaggcatgcatggctctctaat
ttcccctctcccacaaacatcttttgtgtctatcctcaatctcttcatta
ttccttgctcaaaaaatgtcacggctggtgtttcctttccccaccaaggc
gagataatcactaatcccattccgggattattaatcctggtctcttttca
cagagcctggtcctctgctgactctcatttttctgtctctacatgtgccc
aggaatatacatacacatgaagaaagacatagctgtgcaggcaaatatag
ggatggatacatgggtccatccaggccctagacacctgatcccaagcata
tgcatgctgagactgaacgtaccatgggagcagccaagatcagcatgatg
cagcaagtggtggccctgctattggtgtagtcgctgatgagccctgccat
gatgccacctgaaacacatgctcactcgcaagctgtctttgacactacgt
gctgttcctcatctgctgcccagtgctgggctggccttaagaatcaccac
ctccctctgcagtcttcccctgttcccatcactccaagaaaccacagagc
aatgatcacttttcttaggcccacccagtctagcaggaacagaaatgaga
atacattaggaggctttcgctctctacccagatcatggccagctgtccct
tctttctgtacctctgcatagaagcaaaataaaagacagcatgccaggac
aaaaggacagggcctcacctatgatgccaccaacatcaaaagcgttggaa
taggtcctcagcctcttggcactaaagtgagctatggaaaacacaaaaac
ataatcagacccacggggaggtttggaacaaatcttcctgaatgacacag
ccagcagaagtcctgtggcgcattatcagtcagaaggctgagctacaacg
gcatgatgctagagcacaaggtgattgcacgactgaacacacac
gaattccctgtgtgtactgccccagcaaggcttttgtacatgcttctcct
tctccttggaatgtgtcctcctatccttttgtaacccctgatatatgttc
cctgagtactttaaattgcattataataatctgttcacttactctcttcc
tctgtgaagattgttttctgagtaaaagtcacagcataattacatcttta
tcctgtgtctgggatatagtcaatgggacacaaatgaatgtttgtctagt
aactaagagaacaaacacatgaatgaatgagtgagtgagtgaatgaatga
atgaatgaatgagagtaatggtttgggaatgactgatttgcaatatggaa
agaaagttaaggcagtaaaggaagaaaagagatatcttgtacattcaggt
tgttcatctgttccttttgcttatgtggaaataaaattatttcgtttcat
caaaagtttattgagcatccaggttgtgctatgcactctgctagatgcta
agtgaatacaaagatgaagatcaaaacaaagcaaaacaaaattaaaaaaa
caaaaaacaaaaaaaccccacttctttacttaatccaaatttaaggcaaa
tttggcttgagtctgagaagccagcccggccgggattcagcaccagggtg
tggcatgctctcatctcaccctacccctcacccctgtatctcaaggctga
gcaacaggtagtcttccaagtcttgcttctcctaacctgcctgcactatc
gcctacaagtactattttatggtggatgaggcacctggggaggtttagtg
gattgtgggttctggctaagtaaggagagctgcagacacacctgccacgt
gagcaggtagaaaggccatcaggatgggggactgagagtcatgctggtgg
ggtgaggggacacaggcaaaccagaaatcctggtgcctgcagggtcgggg
tgaagtgtgttctggttgtgaggtgatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_37042098_37043306
seq2: B6Ng01-087P11.b_48_1241

seq1  GAATTCTACATATCACTTGCTTTTCCCGCCTTGTGCATCTGCACTTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATATCACTTGCTTTTCCCGCCTTGTGCATCTGCACTTCTCA  50

seq1  GGTCTTTATGTGTCTCAATAGATGGTCTAACTATGGTAATCTCTAATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTATGTGTCTCAATAGATGGTCTAACTATGGTAATCTCTAATTTC  100

seq1  CTTTTATTTTTCTTATGGTTTTGAAATGAGAATCATGCAACCCAGGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTTTCTTATGGTTTTGAAATGAGAATCATGCAACCCAGGGTCT  150

seq1  CCTGAAACTCACTCTGTAGCTGAGGAAGACTTTGAACTCCTGATTCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACTCACTCTGTAGCTGAGGAAGACTTTGAACTCCTGATTCCCCC  200

seq1  TGCCTTTACCTCCCAAATCCTGGGATTACAGGCATGCATGGCTCTCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTACCTCCCAAATCCTGGGATTACAGGCATGCATGGCTCTCTAAT  250

seq1  TTCCCCTCTCCCACAAACATCTTTTGTGTCTATCCTCAATCTCTTCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCTCCCACAAACATCTTTTGTGTCTATCCTCAATCTCTTCATTA  300

seq1  TTCCTTGCTCAAAAAATGTCACGGCTGGTGTTTCCTTTCCCCACCAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCTCAAAAAATGTCACGGCTGGTGTTTCCTTTCCCCACCAAGGC  350

seq1  GAGATAATCACTAATCCCATTCCGGGATTATTAATCCTGGTCTCTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATCACTAATCCCATTCCGGGATTATTAATCCTGGTCTCTTTTCA  400

seq1  CAGAGCCTGGTCCTCTGCTGACTCTCATTTTTCTGTCTCTACATGTGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCTGGTCCTCTGCTGACTCTCATTTTTCTGTCTCTACATGTGCCC  450

seq1  AGGAATATACATACACATGAAGAAAGACATAGCTGTGCAGGCAAATATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATACATACACATGAAGAAAGACATAGCTGTGCAGGCAAATATAG  500

seq1  GGATGGATACATGGGTCCATCCAGGCCCTAGACACCTGATCCCAAGCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGATACATGGGTCCATCCAGGCCCTAGACACCTGATCCCAAGCATA  550

seq1  TGCATGCTGAGACTGAACGTACCATGGGAGCAGCCAAGATCAGCATGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCTGAGACTGAACGTACCATGGGAGCAGCCAAGATCAGCATGATG  600

seq1  CAGCAAGTGGTGGCCCTGCTATTGGTGTAGTCGCTGATGAGCCCTGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTGGTGGCCCTGCTATTGGTGTAGTCGCTGATGAGCCCTGCCAT  650

seq1  GATGCCACCTGAAACACATGCTCACTCGCAAGCTGTCTTTGACACTACGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCACCTGAAACACATGCTCACTCGCAAGCTGTCTTTGACACTACGT  700

seq1  GCTGTTCCTCATCTGCTGCCCAGTGCTGGGCTGGCCTTAAGAATCACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCCTCATCTGCTGCCCAGTGCTGGGCTGGCCTTAAGAATCACCAC  750

seq1  CTCCCTCTGCAGTCTTCCCCTGTTCCCATCACTCCAAGAAACCACAGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTGCAGTCTTCCCCTGTTCCCATCACTCCAAGAAACCACAGAGC  800

seq1  AATGATCACTTTTCTTAGGCCCACCCAGTCTAGCAGGAACAGAAATGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCACTTTTCTTAGGCCCACCCAGTCTAGCAGGAACAGAAATGAGA  850

seq1  ATACATTAGGAGGCTTTCGCTCTCTACCCAGATCATGGCCAGCTGTCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTAGGAGGCTTTCGCTCTCTACCCAGATCATGGCCAGCTGTCCCT  900

seq1  TCTTTCTGTACCTCTGCATAGAAGCAAAATAAAAGACAGCATGCCAGGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTACCTCTGCATAGAAGCAAAATAAAAGACAGCATGCCAGGAC  950

seq1  AAAAGGACAGGGCCTCACCTATGATGCCACCAACATCAAAAAGCGT--GG  998
      ||||||||||||||||||||||||||||||||||||| ||||||||  | 
seq2  AAAAGGACAGGGCCTCACCTATGATGCCACCAACATC-AAAAGCGTTGGA  999

seq1  ATAGGTCCCCAGCCTCCTTGGCACTAAAGTGAGCTATGGAAAACACAAAA  1048
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  ATAGGTCCTCAGCCT-CTTGGCACTAAAGTGAGCTATGGAAAACACAAAA  1048

seq1  ACATAATCAGACACACGGGGAGGTTTGGAACAAATC-TCCTGAATGACAC  1097
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  ACATAATCAGACCCACGGGGAGGTTTGGAACAAATCTTCCTGAATGACAC  1098

seq1  AGCCAGCAGAGTTCCTGTGGCGCATTAATCCAGTCCAAGGAAAAGGCTGA  1147
      ||||||||||  |||||||||||||||   |||||     | ||||||||
seq2  AGCCAGCAGAAGTCCTGTGGCGCATTA--TCAGTC-----AGAAGGCTGA  1141

seq1  GGCTACACGGCCAAGTGATTGGCTAGAGCCACCAGGTGAGTTTGCAGCAG  1197
       ||||||  | ||  ||||  ||||||| ||| ||||||  |||||   |
seq2  -GCTACAACGGCA--TGAT--GCTAGAG-CACAAGGTGA--TTGCA--CG  1181

seq1  CCTG-ACACACAC  1209
       ||| ||||||||
seq2  ACTGAACACACAC  1194

seq1: chr9_37193618_37194596
seq2: B6Ng01-087P11.g_69_1048 (reverse)

seq1  TCCATCACCTCCACACCAGAACACACTTCACCCCGGCCCTGCAGGCACCA  50
      |||||||||||   ||||||||||||||||||||| ||||||||||||||
seq2  TCCATCACCTCACAACCAGAACACACTTCACCCCGACCCTGCAGGCACCA  50

seq1  AGATTTCTGGTTTGCCTGTGTCCCCTCACCCCACCAGCATGACTCTCAGT  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTGGTTTGCCTGTGTCCCCTCACCCCACCAGCATGACTCTCAGT  100

seq1  CCCCCCATCCTGATGGCC-TTCTACCTGCTCACGTGGCAGGTGTGTCTGC  149
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  -CCCCCATCCTGATGGCCTTTCTACCTGCTCACGTGGCAGGTGTGTCTGC  149

seq1  AGCTCTCCTTACTTAGCCAGAACCCACAATCCACT-AACCTCCCCAGGTG  198
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGCTCTCCTTACTTAGCCAGAACCCACAATCCACTAAACCTCCCCAGGTG  199

seq1  CCTCATCCACCATAAAATAGTACTTGTAGGCGATAGTGCAGGCAGGTTAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCACCATAAAATAGTACTTGTAGGCGATAGTGCAGGCAGGTTAG  249

seq1  GAGAAGCAAGACTTGGAAGACTACCTGTTGCTCAGCCTTGAGATACAGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAAGACTTGGAAGACTACCTGTTGCTCAGCCTTGAGATACAGGG  299

seq1  GTGAGGGGTAGGGTGAGATGAGAGCATGCCACACCCTGGTGCTGAATCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGGTAGGGTGAGATGAGAGCATGCCACACCCTGGTGCTGAATCCC  349

seq1  GGCCGGGCTGGCTTCTCAGACTCAAGCCAAATTTGCCTTAAATTTGGATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGGCTGGCTTCTCAGACTCAAGCCAAATTTGCCTTAAATTTGGATT  399

seq1  AAGTAAAGAAGTGGGGTTTTTTTGTTTTTTGTTTTTTTAATTTTGTTTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGAAGTGGGGTTTTTTTGTTTTTTGTTTTTTTAATTTTGTTTTG  449

seq1  CTTTGTTTTGATCTTCATCTTTGTATTCACTTAGCATCTAGCAGAGTGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTGATCTTCATCTTTGTATTCACTTAGCATCTAGCAGAGTGCA  499

seq1  TAGCACAACCTGGATGCTCAATAAACTTTTGATGAAACGAAATAATTTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAACCTGGATGCTCAATAAACTTTTGATGAAACGAAATAATTTTA  549

seq1  TTTCCACATAAGCAAAAGGAACAGATGAACAACCTGAATGTACAAGATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACATAAGCAAAAGGAACAGATGAACAACCTGAATGTACAAGATAT  599

seq1  CTCTTTTCTTCCTTTACTGCCTTAACTTTCTTTCCATATTGCAAATCAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTTCCTTTACTGCCTTAACTTTCTTTCCATATTGCAAATCAGT  649

seq1  CATTCCCAAACCATTACTCTCATTCATTCATTCATTCATTCACTCACTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCAAACCATTACTCTCATTCATTCATTCATTCATTCACTCACTCA  699

seq1  CTCATTCATTCATGTGTTTGTTCTCTTAGTTACTAGACAAACATTCATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCATTCATGTGTTTGTTCTCTTAGTTACTAGACAAACATTCATTT  749

seq1  GTGTCCCATTGACTATATCCCAGACACAGGATAAAGATGTAATTATGCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCATTGACTATATCCCAGACACAGGATAAAGATGTAATTATGCTG  799

seq1  TGACTTTTACTCAGAAAACAATCTTCACAGAGGAAGAGAGTAAGTGAACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTACTCAGAAAACAATCTTCACAGAGGAAGAGAGTAAGTGAACA  849

seq1  GATTATTATAATGCAATTTAAAGTACTCAGGGAACATATATCAGGGGTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTATAATGCAATTTAAAGTACTCAGGGAACATATATCAGGGGTTA  899

seq1  CAAAAGGATAGGAGGACACATTCCAAGGAGAAGGAGAAGCATGTACAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGATAGGAGGACACATTCCAAGGAGAAGGAGAAGCATGTACAAAA  949

seq1  GCCTTGCTGGGGCAGTACACACAGGGAATTC  979
      |||||||||||||||||||||||||||||||
seq2  GCCTTGCTGGGGCAGTACACACAGGGAATTC  980